Wall clock time and date at job start Tue Mar 31 2020 21:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47292 * 2 1 4 4 C 1.50700 * 109.47222 * 119.99567 * 2 1 3 5 5 O 1.21277 * 120.00532 * 119.99937 * 4 2 1 6 6 N 1.34780 * 119.99957 * 300.00163 * 4 2 1 7 7 C 1.46498 * 120.00031 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.27689 * 327.09139 * 7 6 4 9 9 C 1.54597 * 110.39056 * 89.23651 * 7 6 4 10 10 C 1.54940 * 102.92214 * 140.91371 * 9 7 6 11 11 N 1.48527 * 103.22612 * 322.58629 * 10 9 7 12 12 C 1.46902 * 110.99964 * 159.71987 * 11 10 9 13 13 C 1.50702 * 109.47027 * 52.60122 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00004 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99804 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00499 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99671 * 179.72159 * 16 15 13 19 19 N 1.31414 * 120.00152 * 0.27554 * 18 16 15 20 20 Si 1.86803 * 119.99914 * 180.27723 * 18 16 15 21 21 H 1.48496 * 109.47187 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99961 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00007 * 20 18 16 24 24 C 1.47896 * 105.82134 * 39.20939 * 11 10 9 25 25 C 1.53001 * 109.47470 * 239.99254 * 2 1 3 26 26 F 1.39891 * 109.47242 * 300.00549 * 25 2 1 27 27 F 1.39907 * 109.46568 * 60.00400 * 25 2 1 28 28 F 1.39903 * 109.47287 * 179.97438 * 25 2 1 29 29 H 1.09004 * 109.46926 * 60.00592 * 1 2 3 30 30 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47121 * 300.00191 * 1 2 3 32 32 H 0.96998 * 120.00136 * 359.97438 * 6 4 2 33 33 H 1.09001 * 110.72499 * 259.27235 * 9 7 6 34 34 H 1.09008 * 110.72586 * 22.38014 * 9 7 6 35 35 H 1.09002 * 110.66618 * 204.14629 * 10 9 7 36 36 H 1.09002 * 110.66469 * 81.02379 * 10 9 7 37 37 H 1.09004 * 109.47131 * 292.60366 * 12 11 10 38 38 H 1.08994 * 109.47471 * 172.60116 * 12 11 10 39 39 H 0.97000 * 119.99715 * 359.97438 * 15 13 12 40 40 H 0.96991 * 119.99827 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.92297 * 94.01998 * 24 11 10 42 42 H 1.09002 * 109.91586 * 215.31906 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1194 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9406 3.6508 8 1 2.2712 -2.0116 3.4636 9 6 3.5664 -0.3713 4.0797 10 6 3.4654 -0.3517 5.6257 11 7 2.0526 0.0364 5.8690 12 6 1.6269 -0.3466 7.2219 13 6 2.6073 0.1964 8.2295 14 8 3.5660 0.8395 7.8573 15 7 2.4189 -0.0327 9.5442 16 6 3.3104 0.4616 10.4608 17 1 4.1636 1.0350 10.1295 18 6 3.1130 0.2304 11.8167 19 7 2.0746 -0.4668 12.2200 20 14 4.3236 0.9105 13.0662 21 1 5.3983 1.6536 12.3605 22 1 3.6144 1.8275 13.9943 23 1 4.9209 -0.2094 13.8371 24 6 1.2573 -0.6720 4.8428 25 6 2.0400 -0.7214 -1.2491 26 9 1.5737 -2.0403 -1.2491 27 9 1.5737 -0.0619 -2.3915 28 9 3.4391 -0.7209 -1.2494 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1493 0.5391 2.5436 33 1 4.3746 -1.0263 3.7543 34 1 3.7061 0.6358 3.6868 35 1 4.1458 0.3888 6.0463 36 1 3.6692 -1.3403 6.0371 37 1 1.5923 -1.4334 7.2979 38 1 0.6369 0.0634 7.4210 39 1 1.6520 -0.5467 9.8419 40 1 1.9370 -0.6285 13.1664 41 1 0.8883 -1.6156 5.2449 42 1 0.4217 -0.0486 4.5249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316984368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:16 Heat of formation + Delta-G solvation = -241.513241 kcal Electronic energy + Delta-G solvation = -29362.647966 eV Core-core repulsion = 24540.720119 eV Total energy + Delta-G solvation = -4821.927847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11947 -48.62066 -48.58014 -41.37870 -40.47663 -38.98339 -36.08187 -35.56210 -34.90959 -33.32502 -32.04853 -29.55186 -28.11232 -27.40627 -26.04452 -24.61838 -22.54855 -21.94501 -21.53869 -21.04568 -19.87687 -19.80008 -19.47858 -18.67623 -17.99917 -17.60368 -17.22295 -16.81465 -16.58247 -16.30180 -15.97676 -15.62118 -15.56018 -15.39909 -15.31348 -15.00081 -14.92396 -14.76007 -14.70263 -14.57460 -14.15474 -13.97087 -13.72452 -13.46794 -13.37203 -13.24312 -13.02825 -12.94203 -12.72715 -12.63242 -12.40370 -12.38148 -12.26014 -12.12322 -11.82879 -11.47071 -11.07847 -10.37613 -10.05595 -9.97217 -9.35263 -8.46836 -5.94905 1.36328 1.37721 1.42136 1.50067 1.55792 1.98106 2.04972 2.28668 2.66317 2.84308 3.00847 3.09770 3.20552 3.30464 3.53944 3.67177 3.77454 3.84240 4.01848 4.11859 4.27376 4.31619 4.41483 4.49252 4.57525 4.66802 4.70232 4.72342 4.77254 4.89572 5.07627 5.14934 5.25734 5.40234 5.42610 5.82834 5.92286 6.09092 6.36490 6.60899 7.04631 7.13595 7.56409 8.12249 8.70742 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.040692 B = 0.001876 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.938120 B =14920.785481 C =15175.543376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 H 0.173 0.827 4 C 0.520 3.480 5 O -0.567 6.567 6 N -0.693 5.693 7 C 0.144 3.856 8 H 0.089 0.911 9 C -0.126 4.126 10 C 0.040 3.960 11 N -0.505 5.505 12 C 0.046 3.954 13 C 0.438 3.562 14 O -0.614 6.614 15 N -0.573 5.573 16 C -0.330 4.330 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.991 3.009 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.272 1.272 24 C 0.032 3.968 25 C 0.464 3.536 26 F -0.186 7.186 27 F -0.176 7.176 28 F -0.190 7.190 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.422 0.578 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.068 0.932 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.938 0.606 -24.511 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 H 0.190 0.810 4 C 0.305 3.695 5 O -0.446 6.446 6 N -0.346 5.346 7 C 0.039 3.961 8 H 0.107 0.893 9 C -0.165 4.165 10 C -0.087 4.087 11 N -0.230 5.230 12 C -0.085 4.085 13 C 0.226 3.774 14 O -0.501 6.501 15 N -0.211 5.211 16 C -0.459 4.459 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.096 4.096 25 C 0.409 3.591 26 F -0.168 7.168 27 F -0.158 7.158 28 F -0.172 7.172 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.957 0.820 -24.686 25.950 hybrid contribution 0.454 -0.816 1.000 1.368 sum -7.503 0.004 -23.687 24.847 Atomic orbital electron populations 1.21956 0.86853 1.04790 1.07061 1.22716 1.03068 1.03609 0.88037 0.80964 1.20247 0.79798 0.84104 0.85312 1.90818 1.38975 1.27743 1.87060 1.45769 1.52981 1.32062 1.03761 1.21690 0.93063 0.97247 0.84128 0.89302 1.22882 0.97326 1.02039 0.94287 1.23250 0.91397 0.98987 0.95115 1.64636 1.03194 1.54125 1.01004 1.22031 0.98711 0.99403 0.88335 1.20767 0.88454 0.84653 0.83549 1.90446 1.34501 1.45554 1.79553 1.41933 1.25422 1.48766 1.04930 1.19675 1.06444 1.32375 0.87425 0.90284 1.26023 0.99091 0.97084 0.99165 1.69671 1.29091 1.39907 1.17457 0.84889 0.77843 0.78132 0.77595 1.19821 1.19613 1.19781 1.23274 0.96658 0.98989 0.90664 1.20235 0.75305 0.77660 0.85855 1.93176 1.88323 1.38487 1.96791 1.93195 1.88367 1.80544 1.53673 1.93194 1.30781 1.96392 1.96800 0.88345 0.91579 0.86970 0.73940 0.91220 0.90142 0.90046 0.95377 0.91221 0.86556 0.76989 0.91342 0.91345 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.85 71.98 0.64 -0.09 16 2 C -0.15 -1.61 2.71 -11.54 -0.03 -1.65 16 3 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 4 C 0.52 9.16 6.92 87.66 0.61 9.77 16 5 O -0.57 -15.70 14.49 -3.02 -0.04 -15.75 16 6 N -0.69 -9.60 4.95 -438.37 -2.17 -11.77 16 7 C 0.14 2.83 3.34 45.87 0.15 2.99 16 8 H 0.09 1.98 7.56 -2.39 -0.02 1.96 16 9 C -0.13 -3.14 6.78 31.80 0.22 -2.93 16 10 C 0.04 1.30 5.30 86.65 0.46 1.76 16 11 N -0.50 -14.55 5.26 -887.57 -4.67 -19.22 16 12 C 0.05 1.48 5.52 85.56 0.47 1.96 16 13 C 0.44 19.97 7.49 87.66 0.66 20.63 16 14 O -0.61 -32.35 13.10 -3.07 -0.04 -32.39 16 15 N -0.57 -28.59 5.29 -306.97 -1.62 -30.22 16 16 C -0.33 -18.36 9.68 84.04 0.81 -17.54 16 17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 19 N -0.92 -48.94 13.05 21.67 0.28 -48.66 16 20 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 C 0.03 0.60 6.47 86.45 0.56 1.16 16 25 C 0.46 8.09 2.42 71.98 0.17 8.27 16 26 F -0.19 -4.07 15.88 44.97 0.71 -3.35 16 27 F -0.18 -2.67 16.80 44.97 0.76 -1.91 16 28 F -0.19 -4.33 16.40 44.97 0.74 -3.60 16 29 H 0.10 0.25 7.80 -2.38 -0.02 0.23 16 30 H 0.07 0.51 7.80 -2.39 -0.02 0.49 16 31 H 0.11 -0.01 7.56 -2.39 -0.02 -0.03 16 32 H 0.42 3.00 7.77 -92.71 -0.72 2.28 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.95 8.06 -2.38 -0.02 1.93 16 35 H 0.08 3.31 5.97 -2.39 -0.01 3.30 16 36 H 0.03 0.94 8.02 -2.39 -0.02 0.93 16 37 H 0.07 1.99 7.81 -2.38 -0.02 1.97 16 38 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.40 18.75 7.90 -92.71 -0.73 18.01 16 40 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 41 H 0.07 1.19 7.57 -2.39 -0.02 1.17 16 42 H 0.11 1.50 7.65 -2.39 -0.02 1.48 16 Total: -1.00 -74.08 358.42 0.79 -73.29 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.36 Total: 25.01 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 5.18 Total: 24.06 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -8.18 Total: -109.87 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.08 Total: -48.14 kcal Atomic # 9 Polarization: -11.07 SS G_CDS: 2.21 Total: -8.86 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -74.08 0.79 -73.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.219 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds