Wall clock time and date at job start Tue Mar 31 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47023 * 2 1 4 4 C 1.50701 * 109.46859 * 239.99892 * 2 1 3 5 5 O 1.21281 * 120.00141 * 240.00333 * 4 2 1 6 6 N 1.34779 * 119.99860 * 59.99775 * 4 2 1 7 7 C 1.46509 * 119.99685 * 179.97438 * 6 4 2 8 8 H 1.08995 * 110.28424 * 35.67582 * 7 6 4 9 9 C 1.54257 * 110.32213 * 273.54848 * 7 6 4 10 10 C 1.54381 * 105.14978 * 240.95067 * 9 7 6 11 11 N 1.48720 * 104.51692 * 336.27274 * 10 9 7 12 12 C 1.46900 * 111.01831 * 158.96284 * 11 10 9 13 13 C 1.50707 * 109.46999 * 74.48981 * 12 11 10 14 14 O 1.21291 * 119.99777 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00164 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99968 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99994 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99809 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99660 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47320 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46927 * 120.00441 * 20 18 16 23 23 H 1.48498 * 109.47085 * 240.00036 * 20 18 16 24 24 C 1.48567 * 104.28820 * 39.36098 * 11 10 9 25 25 C 1.52997 * 109.47113 * 119.99973 * 2 1 3 26 26 F 1.39903 * 109.47089 * 179.97438 * 25 2 1 27 27 F 1.39894 * 109.47071 * 299.99869 * 25 2 1 28 28 F 1.39905 * 109.47033 * 59.99778 * 25 2 1 29 29 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46407 * 300.00217 * 1 2 3 31 31 H 1.08993 * 109.47195 * 59.99686 * 1 2 3 32 32 H 0.97001 * 120.00389 * 0.02562 * 6 4 2 33 33 H 1.09002 * 110.32715 * 359.90123 * 9 7 6 34 34 H 1.08998 * 110.32251 * 122.00649 * 9 7 6 35 35 H 1.09004 * 110.40867 * 94.98012 * 10 9 7 36 36 H 1.08996 * 110.41187 * 217.42234 * 10 9 7 37 37 H 1.08997 * 109.47620 * 194.49319 * 12 11 10 38 38 H 1.08999 * 109.47148 * 314.49752 * 12 11 10 39 39 H 0.97001 * 119.99817 * 359.97438 * 15 13 12 40 40 H 0.97000 * 119.99919 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.41133 * 201.79165 * 24 11 10 42 42 H 1.09004 * 110.50861 * 79.40616 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7066 -0.2500 -2.4546 7 6 2.1954 -0.9404 -3.6508 8 1 2.2265 -2.0164 -3.4799 9 6 3.5949 -0.4185 -4.0364 10 6 3.4278 0.1770 -5.4509 11 7 2.2383 -0.5188 -6.0101 12 6 1.6472 0.2516 -7.1124 13 6 2.5160 0.1237 -8.3372 14 8 3.5278 -0.5440 -8.2959 15 7 2.1688 0.7512 -9.4783 16 6 2.9589 0.6343 -10.5926 17 1 3.8598 0.0398 -10.5558 18 6 2.6006 1.2808 -11.7692 19 7 1.5047 2.0046 -11.8137 20 14 3.6776 1.1222 -13.2872 21 1 4.8454 0.2589 -12.9776 22 1 2.8914 0.5138 -14.3904 23 1 4.1516 2.4674 -13.7006 24 6 1.2978 -0.6158 -4.8641 25 6 2.0401 -0.7212 1.2492 26 9 3.4391 -0.7217 1.2489 27 9 1.5738 -0.0617 2.3914 28 9 1.5737 -2.0402 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5436 33 1 3.9174 0.3526 -3.3367 34 1 4.3132 -1.2381 -4.0530 35 1 3.2474 1.2504 -5.3926 36 1 4.3104 -0.0288 -6.0566 37 1 0.6513 -0.1332 -7.3316 38 1 1.5763 1.3007 -6.8254 39 1 1.3594 1.2848 -9.5113 40 1 1.2548 2.4562 -12.6350 41 1 0.5780 -1.4173 -5.0299 42 1 0.7816 0.3322 -4.7125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316984369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:21 Heat of formation + Delta-G solvation = -217.850557 kcal Electronic energy + Delta-G solvation = -29276.099843 eV Core-core repulsion = 24455.198087 eV Total energy + Delta-G solvation = -4820.901756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.41338 -47.93854 -47.80900 -40.54546 -38.98623 -37.59712 -34.90841 -34.38868 -33.80399 -31.38931 -30.84108 -28.62318 -26.95200 -26.63129 -24.41508 -23.85415 -21.58853 -21.18133 -20.51075 -19.20572 -19.10769 -18.77169 -18.04670 -17.84736 -17.12169 -16.63462 -16.06857 -15.77074 -15.26694 -14.96316 -14.71511 -14.58643 -14.55167 -14.38546 -14.25294 -14.05337 -13.97371 -13.91810 -13.69289 -13.56068 -13.31662 -13.05946 -12.80489 -12.59615 -12.30700 -12.06679 -11.90908 -11.83950 -11.51770 -11.32584 -11.29558 -11.04893 -10.72073 -10.35753 -10.32334 -10.24070 -9.53303 -9.44202 -8.59595 -8.09726 -7.97403 -6.43660 -3.84256 2.05645 2.12179 2.60842 3.15036 3.25836 3.28121 3.33140 3.59080 3.65959 3.87934 4.00661 4.17426 4.27525 4.29818 4.38607 4.46786 4.64924 4.83687 4.95039 4.98288 5.12657 5.21231 5.22863 5.33450 5.36914 5.52839 5.66356 5.69127 5.80624 5.83238 6.03658 6.17782 6.23714 6.33925 6.92952 6.99039 7.09843 7.53903 7.67568 8.04619 8.59964 9.16825 9.52517 10.04475 10.74251 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.040021 B = 0.001855 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.460437 B =15094.737890 C =15395.440644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 H 0.140 0.860 4 C 0.522 3.478 5 O -0.514 6.514 6 N -0.714 5.714 7 C 0.142 3.858 8 H 0.104 0.896 9 C -0.132 4.132 10 C 0.038 3.962 11 N -0.480 5.480 12 C 0.035 3.965 13 C 0.445 3.555 14 O -0.575 6.575 15 N -0.566 5.566 16 C -0.297 4.297 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.027 3.973 25 C 0.473 3.527 26 F -0.172 7.172 27 F -0.182 7.182 28 F -0.171 7.171 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.401 0.599 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.090 0.910 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 1.142 25.113 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 H 0.158 0.842 4 C 0.305 3.695 5 O -0.389 6.389 6 N -0.366 5.366 7 C 0.037 3.963 8 H 0.122 0.878 9 C -0.171 4.171 10 C -0.090 4.090 11 N -0.204 5.204 12 C -0.097 4.097 13 C 0.230 3.770 14 O -0.459 6.459 15 N -0.203 5.203 16 C -0.426 4.426 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.102 4.102 25 C 0.418 3.582 26 F -0.154 7.154 27 F -0.163 7.163 28 F -0.152 7.152 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.064 -0.484 24.836 25.352 hybrid contribution -0.530 1.613 -0.430 1.751 sum -5.594 1.129 24.406 25.065 Atomic orbital electron populations 1.21860 0.89105 1.04933 1.04964 1.22662 1.01483 1.03111 0.91444 0.84237 1.19716 0.80786 0.84750 0.84218 1.90848 1.36489 1.25243 1.86283 1.46015 1.53566 1.31911 1.05120 1.21791 0.93600 0.98299 0.82579 0.87834 1.22748 0.96687 1.01333 0.96361 1.23212 0.96169 0.95316 0.94315 1.65149 1.04230 1.46561 1.04503 1.22066 0.98883 0.96237 0.92475 1.19665 0.88120 0.84859 0.84363 1.90524 1.27573 1.43493 1.84260 1.41863 1.24548 1.44529 1.09375 1.19746 1.06229 1.28908 0.87762 0.87858 1.25258 0.96956 0.96444 0.99370 1.69614 1.23782 1.32239 1.28806 0.85803 0.79776 0.78030 0.80771 1.19205 1.20754 1.20794 1.23368 0.95555 1.01107 0.90200 1.19738 0.76042 0.77921 0.84473 1.93233 1.29156 1.96341 1.96644 1.93186 1.88568 1.80845 1.53727 1.93216 1.88268 1.37109 1.96648 0.90362 0.89802 0.89640 0.76403 0.91160 0.90007 0.94264 0.88249 0.89206 0.93081 0.77558 0.91953 0.89125 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.85 37.16 0.33 -0.24 16 2 C -0.16 -1.01 2.71 -91.77 -0.25 -1.26 16 3 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.52 4.84 6.92 -10.98 -0.08 4.77 16 5 O -0.51 -7.09 14.53 5.56 0.08 -7.01 16 6 N -0.71 -5.44 4.94 -52.46 -0.26 -5.70 16 7 C 0.14 1.49 3.36 -66.55 -0.22 1.27 16 8 H 0.10 1.26 7.64 -51.93 -0.40 0.86 16 9 C -0.13 -1.59 6.77 -25.35 -0.17 -1.76 16 10 C 0.04 0.55 5.93 -2.09 -0.01 0.54 16 11 N -0.48 -7.42 4.98 -231.26 -1.15 -8.57 16 12 C 0.04 0.59 5.32 -4.97 -0.03 0.56 16 13 C 0.44 10.23 7.63 -10.98 -0.08 10.14 16 14 O -0.58 -15.33 14.80 5.55 0.08 -15.25 16 15 N -0.57 -14.03 5.29 -10.96 -0.06 -14.09 16 16 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 19 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 20 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 C 0.03 0.29 6.17 -2.18 -0.01 0.27 16 25 C 0.47 4.24 2.42 37.16 0.09 4.33 16 26 F -0.17 -1.93 16.40 2.25 0.04 -1.89 16 27 F -0.18 -1.47 16.80 2.25 0.04 -1.43 16 28 F -0.17 -1.86 15.88 2.25 0.04 -1.82 16 29 H 0.08 0.38 7.80 -51.93 -0.41 -0.03 16 30 H 0.08 0.23 7.80 -51.93 -0.41 -0.17 16 31 H 0.08 0.16 7.56 -51.93 -0.39 -0.24 16 32 H 0.40 1.82 7.77 -40.82 -0.32 1.50 16 33 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16 36 H 0.10 1.78 7.24 -51.93 -0.38 1.40 16 37 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 38 H 0.05 0.76 7.77 -51.93 -0.40 0.35 16 39 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.41 7.60 -51.93 -0.39 0.01 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -34.00 361.55 -6.15 -40.15 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.43 Total: 7.05 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -0.68 Total: 10.77 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.74 Total: -51.86 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.16 Total: -22.26 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.11 Total: -5.14 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.00 -6.15 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.699 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds