Wall clock time and date at job start Tue Mar 31 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47023 * 2 1 4 4 C 1.50701 * 109.46859 * 239.99892 * 2 1 3 5 5 O 1.21281 * 120.00141 * 240.00333 * 4 2 1 6 6 N 1.34779 * 119.99860 * 59.99775 * 4 2 1 7 7 C 1.46509 * 119.99685 * 179.97438 * 6 4 2 8 8 H 1.08995 * 110.28424 * 35.67582 * 7 6 4 9 9 C 1.54257 * 110.32213 * 273.54848 * 7 6 4 10 10 C 1.54381 * 105.14978 * 240.95067 * 9 7 6 11 11 N 1.48720 * 104.51692 * 336.27274 * 10 9 7 12 12 C 1.46900 * 111.01831 * 158.96284 * 11 10 9 13 13 C 1.50707 * 109.46999 * 74.48981 * 12 11 10 14 14 O 1.21291 * 119.99777 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00164 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99968 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99994 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99809 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99660 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47320 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46927 * 120.00441 * 20 18 16 23 23 H 1.48498 * 109.47085 * 240.00036 * 20 18 16 24 24 C 1.48567 * 104.28820 * 39.36098 * 11 10 9 25 25 C 1.52997 * 109.47113 * 119.99973 * 2 1 3 26 26 F 1.39903 * 109.47089 * 179.97438 * 25 2 1 27 27 F 1.39894 * 109.47071 * 299.99869 * 25 2 1 28 28 F 1.39905 * 109.47033 * 59.99778 * 25 2 1 29 29 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46407 * 300.00217 * 1 2 3 31 31 H 1.08993 * 109.47195 * 59.99686 * 1 2 3 32 32 H 0.97001 * 120.00389 * 0.02562 * 6 4 2 33 33 H 1.09002 * 110.32715 * 359.90123 * 9 7 6 34 34 H 1.08998 * 110.32251 * 122.00649 * 9 7 6 35 35 H 1.09004 * 110.40867 * 94.98012 * 10 9 7 36 36 H 1.08996 * 110.41187 * 217.42234 * 10 9 7 37 37 H 1.08997 * 109.47620 * 194.49319 * 12 11 10 38 38 H 1.08999 * 109.47148 * 314.49752 * 12 11 10 39 39 H 0.97001 * 119.99817 * 359.97438 * 15 13 12 40 40 H 0.97000 * 119.99919 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.41133 * 201.79165 * 24 11 10 42 42 H 1.09004 * 110.50861 * 79.40616 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7066 -0.2500 -2.4546 7 6 2.1954 -0.9404 -3.6508 8 1 2.2265 -2.0164 -3.4799 9 6 3.5949 -0.4185 -4.0364 10 6 3.4278 0.1770 -5.4509 11 7 2.2383 -0.5188 -6.0101 12 6 1.6472 0.2516 -7.1124 13 6 2.5160 0.1237 -8.3372 14 8 3.5278 -0.5440 -8.2959 15 7 2.1688 0.7512 -9.4783 16 6 2.9589 0.6343 -10.5926 17 1 3.8598 0.0398 -10.5558 18 6 2.6006 1.2808 -11.7692 19 7 1.5047 2.0046 -11.8137 20 14 3.6776 1.1222 -13.2872 21 1 4.8454 0.2589 -12.9776 22 1 2.8914 0.5138 -14.3904 23 1 4.1516 2.4674 -13.7006 24 6 1.2978 -0.6158 -4.8641 25 6 2.0401 -0.7212 1.2492 26 9 3.4391 -0.7217 1.2489 27 9 1.5738 -0.0617 2.3914 28 9 1.5737 -2.0402 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5436 33 1 3.9174 0.3526 -3.3367 34 1 4.3132 -1.2381 -4.0530 35 1 3.2474 1.2504 -5.3926 36 1 4.3104 -0.0288 -6.0566 37 1 0.6513 -0.1332 -7.3316 38 1 1.5763 1.3007 -6.8254 39 1 1.3594 1.2848 -9.5113 40 1 1.2548 2.4562 -12.6350 41 1 0.5780 -1.4173 -5.0299 42 1 0.7816 0.3322 -4.7125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316984369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:21 Heat of formation + Delta-G solvation = -244.590416 kcal Electronic energy + Delta-G solvation = -29277.259371 eV Core-core repulsion = 24455.198087 eV Total energy + Delta-G solvation = -4822.061284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11971 -48.62468 -48.57792 -41.36853 -40.34879 -39.05822 -36.02766 -35.60290 -34.94291 -33.27582 -32.04267 -29.60444 -28.11186 -27.40954 -26.05137 -24.64196 -22.66999 -21.98626 -21.45045 -20.86175 -19.86066 -19.79810 -19.47810 -18.70097 -17.86126 -17.79719 -17.31306 -16.83547 -16.52086 -16.16790 -15.98806 -15.75212 -15.59914 -15.33447 -15.23822 -14.98817 -14.79724 -14.77495 -14.71187 -14.62269 -14.25754 -14.03891 -13.69342 -13.50554 -13.41059 -13.18582 -13.05203 -12.94149 -12.78545 -12.45524 -12.40925 -12.36510 -12.33632 -12.11562 -11.76897 -11.47916 -11.09388 -10.33924 -10.22259 -9.98514 -9.36328 -8.45579 -5.93392 1.36775 1.37226 1.42187 1.48260 1.55920 1.94251 2.08917 2.29838 2.66102 2.82901 3.00380 3.12862 3.21565 3.39349 3.47724 3.66137 3.79004 3.84179 4.00948 4.06447 4.26841 4.31262 4.36530 4.46034 4.55740 4.66128 4.67756 4.70899 4.80378 4.94077 5.04521 5.13514 5.14839 5.32928 5.42760 5.83205 5.92235 6.09269 6.34400 6.63345 7.04857 7.15774 7.59704 8.16569 8.72026 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.040021 B = 0.001855 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.460437 B =15094.737890 C =15395.440644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.151 4.151 3 H 0.176 0.824 4 C 0.520 3.480 5 O -0.566 6.566 6 N -0.695 5.695 7 C 0.151 3.849 8 H 0.084 0.916 9 C -0.124 4.124 10 C 0.041 3.959 11 N -0.512 5.512 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.619 6.619 15 N -0.576 5.576 16 C -0.330 4.330 17 H 0.076 0.924 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.990 3.010 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.270 1.270 24 C 0.035 3.965 25 C 0.463 3.537 26 F -0.190 7.190 27 F -0.176 7.176 28 F -0.187 7.187 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.421 0.579 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.100 0.900 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 3.004 25.886 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 H 0.193 0.807 4 C 0.305 3.695 5 O -0.444 6.444 6 N -0.348 5.348 7 C 0.046 3.954 8 H 0.102 0.898 9 C -0.163 4.163 10 C -0.087 4.087 11 N -0.237 5.237 12 C -0.082 4.082 13 C 0.228 3.772 14 O -0.505 6.505 15 N -0.214 5.214 16 C -0.460 4.460 17 H 0.094 0.906 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.814 3.186 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.093 4.093 25 C 0.408 3.592 26 F -0.172 7.172 27 F -0.158 7.158 28 F -0.169 7.169 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.260 0.740 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.097 0.903 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.217 1.425 25.625 26.660 hybrid contribution 0.140 0.997 -0.595 1.170 sum -7.077 2.422 25.030 26.124 Atomic orbital electron populations 1.21962 0.86886 1.04756 1.07101 1.22720 1.03013 1.03650 0.87923 0.80716 1.20259 0.79826 0.84108 0.85303 1.90839 1.38862 1.27645 1.87033 1.45753 1.53168 1.32128 1.03756 1.21464 0.92761 0.97489 0.83720 0.89798 1.22645 0.97476 1.00955 0.95263 1.23066 0.94606 0.96304 0.94726 1.65020 1.05662 1.46914 1.06099 1.21915 0.98052 0.98357 0.89853 1.20876 0.87995 0.82826 0.85548 1.90501 1.29781 1.44949 1.85232 1.41926 1.24603 1.45312 1.09534 1.19646 1.06483 1.30121 0.89700 0.90638 1.25979 0.98111 0.95717 1.01455 1.69662 1.24432 1.32233 1.29764 0.84915 0.77949 0.78258 0.77488 1.20063 1.19658 1.19568 1.23383 0.94678 1.03330 0.87911 1.20264 0.75320 0.77664 0.85911 1.93195 1.30774 1.96392 1.96800 1.93192 1.88356 1.80526 1.53698 1.93181 1.88338 1.38559 1.96795 0.91727 0.88347 0.86839 0.73966 0.89611 0.92100 0.92687 0.92705 0.86704 0.90257 0.76919 0.91350 0.88178 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 8.85 71.98 0.64 0.06 16 2 C -0.15 -1.42 2.71 -11.54 -0.03 -1.45 16 3 H 0.18 0.41 8.14 -2.39 -0.02 0.39 16 4 C 0.52 8.61 6.92 87.66 0.61 9.21 16 5 O -0.57 -15.50 14.53 -3.03 -0.04 -15.55 16 6 N -0.69 -8.36 4.94 -438.29 -2.16 -10.53 16 7 C 0.15 2.90 3.36 45.88 0.15 3.05 16 8 H 0.08 2.01 7.64 -2.39 -0.02 1.99 16 9 C -0.12 -2.92 6.77 31.49 0.21 -2.70 16 10 C 0.04 1.18 5.93 86.42 0.51 1.70 16 11 N -0.51 -15.08 4.98 -885.57 -4.41 -19.48 16 12 C 0.05 1.55 5.32 85.56 0.46 2.00 16 13 C 0.44 20.39 7.63 87.66 0.67 21.06 16 14 O -0.62 -34.21 14.80 -3.06 -0.05 -34.25 16 15 N -0.58 -28.84 5.29 -306.98 -1.62 -30.46 16 16 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 17 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 18 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 19 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 20 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 C 0.03 0.63 6.17 86.45 0.53 1.17 16 25 C 0.46 7.75 2.42 71.98 0.17 7.93 16 26 F -0.19 -4.20 16.40 44.97 0.74 -3.46 16 27 F -0.18 -2.54 16.80 44.97 0.76 -1.79 16 28 F -0.19 -4.04 15.88 44.97 0.71 -3.33 16 29 H 0.06 0.47 7.80 -2.39 -0.02 0.45 16 30 H 0.10 0.16 7.80 -2.38 -0.02 0.14 16 31 H 0.11 -0.17 7.56 -2.39 -0.02 -0.19 16 32 H 0.42 1.71 7.77 -92.71 -0.72 0.99 16 33 H 0.09 1.73 7.95 -2.39 -0.02 1.71 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.39 7.75 -2.38 -0.02 1.37 16 36 H 0.05 2.07 7.24 -2.39 -0.02 2.05 16 37 H 0.11 3.04 8.08 -2.39 -0.02 3.02 16 38 H 0.08 2.06 7.77 -2.39 -0.02 2.04 16 39 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 40 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 0.97 7.60 -2.39 -0.02 0.95 16 Total: -1.00 -78.36 361.55 1.07 -77.28 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.37 Total: 21.21 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 5.20 Total: 24.04 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -7.91 Total: -108.94 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.09 Total: -49.80 kcal Atomic # 9 Polarization: -10.78 SS G_CDS: 2.21 Total: -8.58 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -78.36 1.07 -77.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.308 kcal (2) G-P(sol) polarization free energy of solvation -78.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds