Wall clock time and date at job start Tue Mar 31 2020 21:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41602 * 113.99797 * 2 1 4 4 C 1.46498 * 120.00056 * 275.01714 * 3 2 1 5 5 C 1.34776 * 119.99605 * 95.02516 * 3 2 1 6 6 O 1.21283 * 120.00079 * 5.68626 * 5 3 2 7 7 C 1.50700 * 119.99865 * 185.69396 * 5 3 2 8 8 H 1.08994 * 109.47439 * 49.81041 * 7 5 3 9 9 C 1.53002 * 109.46869 * 289.80811 * 7 5 3 10 10 N 1.46497 * 109.47082 * 169.81345 * 7 5 3 11 11 C 1.34781 * 119.99991 * 204.99627 * 10 7 5 12 12 O 1.21599 * 119.99709 * 359.97438 * 11 10 7 13 13 N 1.34777 * 120.00150 * 179.97438 * 11 10 7 14 14 C 1.40021 * 119.99759 * 175.16407 * 13 11 10 15 15 C 1.38914 * 120.00383 * 215.35915 * 14 13 11 16 16 C 1.38006 * 120.00495 * 180.02562 * 15 14 13 17 17 C 1.38911 * 119.99619 * 0.02562 * 16 15 14 18 18 O 1.35779 * 119.99407 * 179.97438 * 17 16 15 19 19 C 1.34812 * 117.00296 * 5.34580 * 18 17 16 20 20 H 1.07996 * 119.99925 * 354.92794 * 19 18 17 21 21 C 1.38634 * 119.99933 * 174.93403 * 19 18 17 22 22 N 1.31573 * 120.00363 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99855 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46710 * 89.99961 * 23 21 19 25 25 H 1.48493 * 109.47104 * 209.99864 * 23 21 19 26 26 H 1.48500 * 109.47185 * 330.00190 * 23 21 19 27 27 C 1.38897 * 120.00159 * 0.23670 * 17 16 15 28 28 C 1.38011 * 120.00363 * 359.48435 * 27 17 16 29 29 H 1.08997 * 109.47030 * 184.99560 * 1 2 3 30 30 H 1.08992 * 109.46973 * 305.00211 * 1 2 3 31 31 H 1.09006 * 109.46745 * 64.99512 * 1 2 3 32 32 H 1.09000 * 109.47246 * 270.00163 * 4 3 2 33 33 H 1.08993 * 109.47424 * 30.00587 * 4 3 2 34 34 H 1.09002 * 109.46746 * 150.00868 * 4 3 2 35 35 H 1.08999 * 109.47138 * 186.57247 * 9 7 5 36 36 H 1.08995 * 109.47467 * 306.57965 * 9 7 5 37 37 H 1.09002 * 109.47135 * 66.58026 * 9 7 5 38 38 H 0.97000 * 120.00434 * 24.99878 * 10 7 5 39 39 H 0.96994 * 119.99773 * 355.17118 * 13 11 10 40 40 H 1.08007 * 119.99652 * 0.04929 * 15 14 13 41 41 H 1.07999 * 120.00152 * 180.02562 * 16 15 14 42 42 H 0.96998 * 120.00464 * 179.97438 * 22 21 19 43 43 H 1.08009 * 119.99720 * 179.72267 * 27 17 16 44 44 H 1.08003 * 120.00206 * 180.23335 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2015 2.0079 -1.2638 5 6 2.3724 1.8676 1.1628 6 8 2.3061 1.2381 2.1973 7 6 2.8654 3.2916 1.1774 8 1 2.1657 3.9240 0.6312 9 6 4.2418 3.3615 0.5127 10 7 2.9676 3.7588 2.5621 11 6 2.8900 5.0761 2.8363 12 8 2.7357 5.8768 1.9343 13 7 2.9835 5.5059 4.1103 14 6 3.0047 6.8785 4.3863 15 6 3.7796 7.3650 5.4316 16 6 3.8001 8.7177 5.7039 17 6 3.0455 9.5929 4.9330 18 8 3.0653 10.9237 5.2014 19 6 3.9209 11.3432 6.1551 20 1 4.4909 10.6233 6.7236 21 6 4.0688 12.6986 6.4061 22 7 3.3746 13.5756 5.7132 23 14 5.2538 13.2797 7.7281 24 1 6.5952 13.4973 7.1294 25 1 4.7594 14.5529 8.3109 26 1 5.3487 12.2509 8.7948 27 6 2.2665 9.1059 3.8913 28 6 2.2504 7.7538 3.6152 29 1 -0.3633 -1.0237 0.0895 30 1 -0.3633 0.5894 0.8417 31 1 -0.3633 0.4344 -0.9314 32 1 3.1855 1.7687 -1.6672 33 1 1.4336 1.7051 -1.9756 34 1 2.1318 3.0816 -1.0890 35 1 4.6495 4.3660 0.6264 36 1 4.9105 2.6422 0.9854 37 1 4.1458 3.1262 -0.5473 38 1 3.0911 3.1201 3.2816 39 1 3.0362 4.8644 4.8359 40 1 4.3663 6.6845 6.0310 41 1 4.4028 9.0959 6.5164 42 1 3.4778 14.5239 5.8891 43 1 1.6763 9.7859 3.2948 44 1 1.6476 7.3756 2.8028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329948036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:19 Heat of formation + Delta-G solvation = -35.593567 kcal Electronic energy + Delta-G solvation = -28301.348837 eV Core-core repulsion = 24030.207077 eV Total energy + Delta-G solvation = -4271.141760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.92404 -39.97391 -38.75079 -37.66134 -36.68045 -35.35067 -34.21337 -33.89313 -32.17207 -30.59038 -30.17789 -27.91033 -27.60403 -26.86302 -25.34990 -24.43071 -22.30886 -21.80906 -20.60524 -20.41372 -18.97210 -18.07944 -17.86200 -17.45636 -16.97619 -16.66177 -16.51816 -15.75664 -15.26078 -15.08782 -14.75882 -14.58411 -14.53690 -14.25769 -13.98155 -13.84027 -13.54287 -13.48115 -13.30882 -12.88546 -12.80149 -12.70468 -12.51018 -12.33618 -12.04503 -11.81067 -11.54559 -11.48554 -11.08372 -11.00984 -10.73625 -10.45516 -10.27611 -10.00633 -9.63208 -9.56441 -9.34103 -9.22699 -8.67763 -8.17132 -6.89710 -6.42084 -4.00157 1.18084 1.96332 2.18522 2.26022 2.61289 3.12976 3.15082 3.19879 3.25770 3.73154 3.95191 3.98884 4.18839 4.54016 4.60707 4.64127 4.68752 4.70782 4.77646 4.83588 5.03583 5.08993 5.11853 5.22387 5.36543 5.37615 5.58795 5.79801 5.81825 6.03942 6.15486 6.20765 6.25079 6.30139 6.57053 6.68687 6.86407 6.93461 7.14153 7.23964 7.27909 7.45816 7.53357 7.82523 8.00249 8.02785 8.60554 9.03386 9.74297 10.75946 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.034836 B = 0.001833 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.563321 B =15270.546121 C =15445.315044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.136 6.136 3 N -0.484 5.484 4 C 0.071 3.929 5 C 0.517 3.483 6 O -0.514 6.514 7 C 0.157 3.843 8 H 0.119 0.881 9 C -0.168 4.168 10 N -0.734 5.734 11 C 0.706 3.294 12 O -0.575 6.575 13 N -0.671 5.671 14 C 0.052 3.948 15 C -0.090 4.090 16 C -0.220 4.220 17 C 0.146 3.854 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.179 4.179 28 C -0.066 4.066 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.406 0.594 39 H 0.400 0.600 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.270 0.730 43 H 0.120 0.880 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 -24.609 -11.786 27.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.138 6.138 3 N -0.264 5.264 4 C -0.070 4.070 5 C 0.305 3.695 6 O -0.387 6.387 7 C 0.047 3.953 8 H 0.136 0.864 9 C -0.226 4.226 10 N -0.394 5.394 11 C 0.406 3.594 12 O -0.452 6.452 13 N -0.318 5.318 14 C -0.041 4.041 15 C -0.111 4.111 16 C -0.239 4.239 17 C 0.092 3.908 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.199 4.199 28 C -0.086 4.086 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.242 0.758 39 H 0.234 0.766 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.079 0.921 43 H 0.138 0.862 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.520 -23.969 -12.159 26.994 hybrid contribution 0.380 -0.500 1.260 1.408 sum -2.140 -24.468 -10.900 26.872 Atomic orbital electron populations 1.23360 0.81485 1.04077 1.01282 1.90697 1.20184 1.06200 1.96727 1.49761 1.59077 1.10371 1.07223 1.22327 1.03241 0.96748 0.84691 1.21155 0.77320 0.88448 0.82602 1.90724 1.52819 1.63438 1.31734 1.20482 0.99868 0.90160 0.84783 0.86365 1.22314 0.94846 1.04709 1.00755 1.44820 1.79878 1.06640 1.08014 1.15806 0.78165 0.81801 0.83604 1.90927 1.56246 1.53084 1.44970 1.42244 1.76892 1.06675 1.05961 1.17031 1.04179 0.81010 1.01840 1.20468 0.97686 0.95128 0.97821 1.20958 1.06292 0.92394 1.04306 1.19421 0.93441 0.85280 0.92623 1.83990 1.54963 1.16800 1.52339 1.21306 1.20288 0.91996 1.13136 0.89092 1.25282 0.97991 0.94713 0.98594 1.70045 1.38752 1.02039 1.38930 0.85718 0.79481 0.78608 0.79644 1.19920 1.20310 1.19234 1.20148 1.05083 0.94824 0.99832 1.20758 0.97286 0.91875 0.98708 0.87463 0.92631 0.92898 0.90697 0.90019 0.89031 0.89750 0.91607 0.90547 0.75799 0.76599 0.87182 0.85119 0.92059 0.86164 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 11.45 101.05 1.16 1.13 16 2 O -0.14 -1.27 11.19 -29.59 -0.33 -1.60 16 3 N -0.48 -3.98 3.36 -67.08 -0.23 -4.21 16 4 C 0.07 0.29 9.37 59.85 0.56 0.85 16 5 C 0.52 5.23 7.19 -10.99 -0.08 5.15 16 6 O -0.51 -6.90 16.24 -12.56 -0.20 -7.11 16 7 C 0.16 1.44 2.15 -69.08 -0.15 1.29 16 8 H 0.12 1.05 6.49 -51.93 -0.34 0.71 16 9 C -0.17 -1.27 9.17 37.16 0.34 -0.93 16 10 N -0.73 -7.95 5.01 -59.81 -0.30 -8.24 16 11 C 0.71 9.98 8.37 -86.91 -0.73 9.25 16 12 O -0.58 -9.97 13.45 5.28 0.07 -9.90 16 13 N -0.67 -9.32 5.34 -14.18 -0.08 -9.39 16 14 C 0.05 0.93 6.30 -83.62 -0.53 0.40 16 15 C -0.09 -1.63 9.96 -39.42 -0.39 -2.02 16 16 C -0.22 -4.71 9.16 -39.42 -0.36 -5.07 16 17 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 18 O -0.18 -5.08 9.75 0.01 0.00 -5.08 16 19 C -0.39 -10.89 9.48 30.88 0.29 -10.60 16 20 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 23 Si 0.94 20.49 29.55 -169.99 -5.02 15.46 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.18 -3.93 9.98 -39.42 -0.39 -4.32 16 28 C -0.07 -1.30 8.69 -39.42 -0.34 -1.64 16 29 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.22 7.44 -51.93 -0.39 -0.17 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.28 5.79 -51.93 -0.30 -0.02 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.37 5.59 -51.93 -0.29 0.08 16 38 H 0.41 3.97 7.74 -40.82 -0.32 3.65 16 39 H 0.40 4.21 8.84 -40.82 -0.36 3.85 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 41 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 44 H 0.13 2.50 6.23 -52.48 -0.33 2.17 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -36.24 374.53 -6.07 -42.31 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.40 Total: 8.98 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.98 Total: -2.26 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.16 Total: -46.45 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.46 Total: -23.69 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.24 -6.07 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329948036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.712 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds