Wall clock time and date at job start Tue Mar 31 2020 21:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41602 * 113.99797 * 2 1 4 4 C 1.46498 * 120.00056 * 275.01714 * 3 2 1 5 5 C 1.34776 * 119.99605 * 95.02516 * 3 2 1 6 6 O 1.21283 * 120.00079 * 5.68626 * 5 3 2 7 7 C 1.50700 * 119.99865 * 185.69396 * 5 3 2 8 8 H 1.08994 * 109.47439 * 49.81041 * 7 5 3 9 9 C 1.53002 * 109.46869 * 289.80811 * 7 5 3 10 10 N 1.46497 * 109.47082 * 169.81345 * 7 5 3 11 11 C 1.34781 * 119.99991 * 204.99627 * 10 7 5 12 12 O 1.21599 * 119.99709 * 359.97438 * 11 10 7 13 13 N 1.34777 * 120.00150 * 179.97438 * 11 10 7 14 14 C 1.40021 * 119.99759 * 175.16407 * 13 11 10 15 15 C 1.38914 * 120.00383 * 215.35915 * 14 13 11 16 16 C 1.38006 * 120.00495 * 180.02562 * 15 14 13 17 17 C 1.38911 * 119.99619 * 0.02562 * 16 15 14 18 18 O 1.35779 * 119.99407 * 179.97438 * 17 16 15 19 19 C 1.34812 * 117.00296 * 5.34580 * 18 17 16 20 20 H 1.07996 * 119.99925 * 354.92794 * 19 18 17 21 21 C 1.38634 * 119.99933 * 174.93403 * 19 18 17 22 22 N 1.31573 * 120.00363 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99855 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46710 * 89.99961 * 23 21 19 25 25 H 1.48493 * 109.47104 * 209.99864 * 23 21 19 26 26 H 1.48500 * 109.47185 * 330.00190 * 23 21 19 27 27 C 1.38897 * 120.00159 * 0.23670 * 17 16 15 28 28 C 1.38011 * 120.00363 * 359.48435 * 27 17 16 29 29 H 1.08997 * 109.47030 * 184.99560 * 1 2 3 30 30 H 1.08992 * 109.46973 * 305.00211 * 1 2 3 31 31 H 1.09006 * 109.46745 * 64.99512 * 1 2 3 32 32 H 1.09000 * 109.47246 * 270.00163 * 4 3 2 33 33 H 1.08993 * 109.47424 * 30.00587 * 4 3 2 34 34 H 1.09002 * 109.46746 * 150.00868 * 4 3 2 35 35 H 1.08999 * 109.47138 * 186.57247 * 9 7 5 36 36 H 1.08995 * 109.47467 * 306.57965 * 9 7 5 37 37 H 1.09002 * 109.47135 * 66.58026 * 9 7 5 38 38 H 0.97000 * 120.00434 * 24.99878 * 10 7 5 39 39 H 0.96994 * 119.99773 * 355.17118 * 13 11 10 40 40 H 1.08007 * 119.99652 * 0.04929 * 15 14 13 41 41 H 1.07999 * 120.00152 * 180.02562 * 16 15 14 42 42 H 0.96998 * 120.00464 * 179.97438 * 22 21 19 43 43 H 1.08009 * 119.99720 * 179.72267 * 27 17 16 44 44 H 1.08003 * 120.00206 * 180.23335 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2015 2.0079 -1.2638 5 6 2.3724 1.8676 1.1628 6 8 2.3061 1.2381 2.1973 7 6 2.8654 3.2916 1.1774 8 1 2.1657 3.9240 0.6312 9 6 4.2418 3.3615 0.5127 10 7 2.9676 3.7588 2.5621 11 6 2.8900 5.0761 2.8363 12 8 2.7357 5.8768 1.9343 13 7 2.9835 5.5059 4.1103 14 6 3.0047 6.8785 4.3863 15 6 3.7796 7.3650 5.4316 16 6 3.8001 8.7177 5.7039 17 6 3.0455 9.5929 4.9330 18 8 3.0653 10.9237 5.2014 19 6 3.9209 11.3432 6.1551 20 1 4.4909 10.6233 6.7236 21 6 4.0688 12.6986 6.4061 22 7 3.3746 13.5756 5.7132 23 14 5.2538 13.2797 7.7281 24 1 6.5952 13.4973 7.1294 25 1 4.7594 14.5529 8.3109 26 1 5.3487 12.2509 8.7948 27 6 2.2665 9.1059 3.8913 28 6 2.2504 7.7538 3.6152 29 1 -0.3633 -1.0237 0.0895 30 1 -0.3633 0.5894 0.8417 31 1 -0.3633 0.4344 -0.9314 32 1 3.1855 1.7687 -1.6672 33 1 1.4336 1.7051 -1.9756 34 1 2.1318 3.0816 -1.0890 35 1 4.6495 4.3660 0.6264 36 1 4.9105 2.6422 0.9854 37 1 4.1458 3.1262 -0.5473 38 1 3.0911 3.1201 3.2816 39 1 3.0362 4.8644 4.8359 40 1 4.3663 6.6845 6.0310 41 1 4.4028 9.0959 6.5164 42 1 3.4778 14.5239 5.8891 43 1 1.6763 9.7859 3.2948 44 1 1.6476 7.3756 2.8028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329948036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:18 Heat of formation + Delta-G solvation = -62.156054 kcal Electronic energy + Delta-G solvation = -28302.500673 eV Core-core repulsion = 24030.207077 eV Total energy + Delta-G solvation = -4272.293596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.92043 -41.07763 -40.34171 -38.51778 -38.10977 -36.29265 -35.43259 -34.83918 -34.11167 -31.83170 -31.48513 -29.16616 -28.32206 -27.43768 -27.26430 -25.22896 -23.89825 -23.19083 -21.93919 -21.19432 -20.21134 -19.55638 -18.97482 -18.69994 -18.29934 -17.63727 -17.21539 -16.82122 -16.47303 -16.30095 -16.13338 -15.81355 -15.49217 -15.45707 -15.27986 -15.07530 -14.73162 -14.55494 -14.40187 -14.13895 -13.79933 -13.58431 -13.50842 -13.29263 -13.24397 -13.11319 -12.93753 -12.66241 -12.64526 -12.42643 -12.10039 -11.67444 -11.35783 -11.33276 -11.02467 -10.95547 -10.54440 -10.32955 -10.10988 -9.80321 -8.56567 -8.42558 -6.09727 0.50717 0.57084 0.65363 1.21972 1.38543 1.47365 1.55916 1.57052 2.04510 2.21355 2.86605 3.02127 3.13165 3.19673 3.45212 3.56449 3.91976 3.96335 4.09297 4.18088 4.27405 4.31255 4.34061 4.52236 4.54143 4.59141 4.63050 4.66252 4.73813 4.78541 4.82733 5.08884 5.16923 5.20542 5.27564 5.33952 5.45145 5.58934 5.62122 5.71973 5.92007 5.93816 6.06282 6.22100 6.81824 6.93962 7.01775 7.45591 7.83183 8.80608 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.034836 B = 0.001833 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.563321 B =15270.546121 C =15445.315044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.161 6.161 3 N -0.480 5.480 4 C 0.059 3.941 5 C 0.517 3.483 6 O -0.555 6.555 7 C 0.157 3.843 8 H 0.125 0.875 9 C -0.162 4.162 10 N -0.721 5.721 11 C 0.707 3.293 12 O -0.606 6.606 13 N -0.662 5.662 14 C 0.081 3.919 15 C -0.081 4.081 16 C -0.220 4.220 17 C 0.107 3.893 18 O -0.232 6.232 19 C -0.411 4.411 20 H 0.106 0.894 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.250 1.250 27 C -0.188 4.188 28 C -0.070 4.070 29 H 0.125 0.875 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.413 0.587 39 H 0.421 0.579 40 H 0.156 0.844 41 H 0.131 0.869 42 H 0.271 0.729 43 H 0.113 0.887 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -27.657 -11.994 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.164 6.164 3 N -0.260 5.260 4 C -0.079 4.079 5 C 0.306 3.694 6 O -0.432 6.432 7 C 0.048 3.952 8 H 0.142 0.858 9 C -0.220 4.220 10 N -0.379 5.379 11 C 0.408 3.592 12 O -0.486 6.486 13 N -0.311 5.311 14 C -0.013 4.013 15 C -0.101 4.101 16 C -0.240 4.240 17 C 0.056 3.944 18 O -0.138 6.138 19 C -0.487 4.487 20 H 0.123 0.877 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.190 1.190 25 H -0.199 1.199 26 H -0.173 1.173 27 C -0.208 4.208 28 C -0.090 4.090 29 H 0.143 0.857 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.251 0.749 39 H 0.259 0.741 40 H 0.174 0.826 41 H 0.149 0.851 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.425 -27.142 -12.413 29.880 hybrid contribution -0.070 0.038 1.093 1.096 sum -1.495 -27.104 -11.319 29.411 Atomic orbital electron populations 1.23513 0.79888 1.05187 1.01702 1.90648 1.21894 1.06973 1.96840 1.49900 1.58109 1.09982 1.07961 1.22674 1.04913 0.97005 0.83349 1.21232 0.77037 0.88497 0.82659 1.90704 1.54866 1.64395 1.33257 1.20651 1.01040 0.89717 0.83823 0.85800 1.22285 0.93506 1.03675 1.02539 1.44711 1.78511 1.05440 1.09256 1.15851 0.77766 0.82508 0.83096 1.90920 1.57576 1.54205 1.45864 1.42077 1.76715 1.05386 1.06942 1.17112 1.01535 0.82602 1.00062 1.20799 0.97223 0.94234 0.97819 1.21101 1.05551 0.93598 1.03741 1.19881 0.95453 0.84693 0.94378 1.83957 1.56859 1.19055 1.53958 1.21857 1.20552 0.92875 1.13432 0.87665 1.26609 0.99919 0.94528 1.01233 1.70202 1.41625 1.02427 1.41813 0.84571 0.76717 0.78280 0.76549 1.18990 1.19873 1.17327 1.20272 1.04991 0.95980 0.99575 1.20869 0.97774 0.91097 0.99263 0.85727 0.94106 0.90833 0.89040 0.88228 0.87850 0.91392 0.91544 0.87590 0.74922 0.74144 0.82646 0.85098 0.91956 0.86888 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 11.45 113.37 1.30 1.24 16 2 O -0.16 -2.74 11.19 -21.47 -0.24 -2.98 16 3 N -0.48 -6.89 3.36 -484.53 -1.63 -8.52 16 4 C 0.06 0.31 9.37 127.77 1.20 1.50 16 5 C 0.52 9.56 7.19 87.66 0.63 10.19 16 6 O -0.56 -14.33 16.24 14.28 0.23 -14.10 16 7 C 0.16 2.52 2.15 44.25 0.10 2.62 16 8 H 0.12 1.90 6.49 -2.39 -0.02 1.89 16 9 C -0.16 -2.04 9.17 71.98 0.66 -1.38 16 10 N -0.72 -13.92 5.01 -461.40 -2.31 -16.23 16 11 C 0.71 18.26 8.37 179.05 1.50 19.76 16 12 O -0.61 -19.89 13.45 -4.03 -0.05 -19.95 16 13 N -0.66 -16.27 5.34 -317.03 -1.69 -17.96 16 14 C 0.08 2.68 6.30 38.16 0.24 2.92 16 15 C -0.08 -2.66 9.96 22.38 0.22 -2.44 16 16 C -0.22 -9.32 9.16 22.38 0.20 -9.11 16 17 C 0.11 5.36 6.65 22.59 0.15 5.51 16 18 O -0.23 -14.01 9.75 -22.87 -0.22 -14.23 16 19 C -0.41 -23.76 9.48 67.91 0.64 -23.12 16 20 H 0.11 5.48 5.20 -2.91 -0.02 5.46 16 21 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 22 N -0.92 -56.93 13.67 21.61 0.30 -56.64 16 23 Si 1.02 42.63 29.55 68.60 2.03 44.65 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 27 C -0.19 -8.52 9.98 22.37 0.22 -8.30 16 28 C -0.07 -2.69 8.69 22.38 0.19 -2.50 16 29 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.09 0.21 7.44 -2.39 -0.02 0.19 16 33 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.10 0.31 5.79 -2.39 -0.01 0.30 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.68 5.59 -2.39 -0.01 0.67 16 38 H 0.41 7.08 7.74 -92.71 -0.72 6.37 16 39 H 0.42 7.15 8.84 -92.71 -0.82 6.33 16 40 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.13 5.48 5.63 -2.91 -0.02 5.46 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 44 H 0.14 5.13 6.23 -2.91 -0.02 5.11 16 Total: -1.00 -83.74 374.53 3.67 -80.07 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.46 Total: 29.99 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 7.73 Total: -4.10 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -5.34 Total: -99.35 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.29 Total: -51.26 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -83.74 3.67 -80.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329948036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.910 kcal (2) G-P(sol) polarization free energy of solvation -83.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds