Wall clock time and date at job start Tue Mar 31 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47408 * 2 1 4 4 O 1.41595 * 119.99833 * 255.00024 * 3 2 1 5 5 C 1.42903 * 113.99851 * 269.99503 * 4 3 2 6 6 C 1.34778 * 120.00078 * 74.99656 * 3 2 1 7 7 O 1.21289 * 119.99515 * 0.02562 * 6 3 2 8 8 C 1.50691 * 120.00090 * 179.97438 * 6 3 2 9 9 N 1.46502 * 109.47013 * 179.97438 * 8 6 3 10 10 C 1.34781 * 119.99688 * 180.02562 * 9 8 6 11 11 O 1.21585 * 120.00226 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99858 * 180.02562 * 10 9 8 13 13 C 1.40022 * 120.00176 * 175.49455 * 12 10 9 14 14 C 1.38908 * 120.00352 * 215.12379 * 13 12 10 15 15 C 1.38003 * 120.00179 * 180.02562 * 14 13 12 16 16 C 1.38899 * 119.99996 * 0.02562 * 15 14 13 17 17 O 1.35783 * 119.99801 * 179.97438 * 16 15 14 18 18 C 1.34820 * 117.00252 * 5.33726 * 17 16 15 19 19 H 1.08001 * 119.99593 * 354.96888 * 18 17 16 20 20 C 1.38634 * 120.00020 * 174.96470 * 18 17 16 21 21 N 1.31572 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99661 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47012 * 90.00521 * 22 20 18 24 24 H 1.48498 * 109.46951 * 210.00132 * 22 20 18 25 25 H 1.48501 * 109.47460 * 330.00194 * 22 20 18 26 26 C 1.38902 * 120.00661 * 0.26478 * 16 15 14 27 27 C 1.38008 * 119.99473 * 359.45951 * 26 16 15 28 28 H 1.09010 * 109.46747 * 59.99678 * 1 2 3 29 29 H 1.08992 * 109.47585 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46921 * 300.00202 * 1 2 3 31 31 H 1.09003 * 109.46921 * 239.99798 * 2 1 3 32 32 H 1.08996 * 109.46667 * 120.00106 * 2 1 3 33 33 H 1.08997 * 109.47594 * 300.00180 * 5 4 3 34 34 H 1.09007 * 109.46719 * 60.00462 * 5 4 3 35 35 H 1.09000 * 109.46860 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47212 * 60.00658 * 8 6 3 37 37 H 1.09000 * 109.47540 * 300.00628 * 8 6 3 38 38 H 0.96993 * 120.00341 * 0.02562 * 9 8 6 39 39 H 0.96997 * 119.99675 * 355.48546 * 12 10 9 40 40 H 1.07998 * 119.99489 * 359.97438 * 14 13 12 41 41 H 1.08004 * 120.00410 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99768 * 179.97438 * 21 20 18 43 43 H 1.07993 * 120.00563 * 179.70790 * 26 16 15 44 44 H 1.08001 * 120.00490 * 180.27632 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 8 2.5537 1.9428 -1.1845 5 6 3.9623 1.7531 -1.3327 6 6 1.9582 2.1173 1.1274 7 8 1.5001 1.6359 2.1421 8 6 2.4611 3.5378 1.1276 9 7 2.2861 4.1176 2.4615 10 6 2.6676 5.3882 2.6993 11 8 3.1566 6.0534 1.8067 12 7 2.5071 5.9215 3.9267 13 6 2.9887 7.2077 4.1997 14 6 3.5038 7.5046 5.4551 15 6 3.9779 8.7723 5.7243 16 6 3.9397 9.7516 4.7401 17 8 4.4057 10.9991 5.0051 18 6 4.9926 11.1915 6.2035 19 1 5.0028 10.3958 6.9337 20 6 5.5831 12.4106 6.4985 21 7 5.5702 13.3801 5.6090 22 14 6.3956 12.6773 8.1592 23 1 7.8257 12.2855 8.0791 24 1 6.2953 14.1105 8.5349 25 1 5.7117 11.8480 9.1838 26 6 3.4191 9.4566 3.4865 27 6 2.9502 8.1873 3.2155 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.4816 2.2163 -0.4939 34 1 4.1849 0.6862 -1.3535 35 1 4.2945 2.2114 -2.2642 36 1 1.8975 4.1229 0.4008 37 1 3.5182 3.5491 0.8618 38 1 1.8957 3.5871 3.1736 39 1 2.0579 5.4144 4.6208 40 1 3.5324 6.7434 6.2208 41 1 4.3780 9.0033 6.7006 42 1 5.9831 14.2333 5.8155 43 1 3.3850 10.2194 2.7227 44 1 2.5495 7.9565 2.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332119818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:40 Heat of formation + Delta-G solvation = -41.235436 kcal Electronic energy + Delta-G solvation = -27955.104459 eV Core-core repulsion = 23683.718049 eV Total energy + Delta-G solvation = -4271.386410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.78474 -40.02993 -38.71401 -37.95087 -36.62692 -34.86402 -34.21687 -33.89982 -32.14124 -30.97003 -30.15645 -28.67941 -27.33012 -26.73346 -25.26193 -23.77837 -22.23211 -21.60892 -20.79082 -20.54498 -19.10525 -17.98934 -17.77755 -17.28991 -17.19716 -16.70769 -16.41380 -15.71174 -15.21781 -14.96143 -14.85144 -14.75780 -14.52142 -14.47389 -14.22146 -13.73335 -13.62256 -13.50080 -13.36759 -12.91851 -12.76253 -12.70217 -12.42716 -12.37284 -11.79270 -11.64033 -11.52689 -11.47294 -11.23372 -10.99773 -10.71652 -10.44377 -10.40651 -9.97263 -9.68715 -9.60753 -9.28255 -9.20296 -8.65674 -8.14714 -6.86971 -6.40452 -3.98467 1.24236 1.87529 2.20634 2.28172 2.58721 3.14441 3.16041 3.20830 3.31532 3.40675 4.00256 4.24514 4.42746 4.48616 4.63147 4.63440 4.68594 4.70077 4.85874 4.96203 5.08983 5.12017 5.13917 5.22193 5.38682 5.38893 5.60862 5.71802 5.82436 5.83720 6.13810 6.18410 6.26261 6.31936 6.71833 6.76402 6.89297 6.96354 7.16580 7.26891 7.30280 7.38424 7.48027 7.85136 8.03653 8.05546 8.65511 9.05024 9.76281 10.77650 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.031639 B = 0.001763 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.783707 B =15874.479555 C =16220.261447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.478 5.478 4 O -0.139 6.139 5 C -0.010 4.010 6 C 0.523 3.477 7 O -0.517 6.517 8 C 0.127 3.873 9 N -0.741 5.741 10 C 0.704 3.296 11 O -0.575 6.575 12 N -0.672 5.672 13 C 0.053 3.947 14 C -0.091 4.091 15 C -0.220 4.220 16 C 0.146 3.854 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.178 4.178 27 C -0.067 4.067 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.406 0.594 39 H 0.399 0.601 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.269 0.731 43 H 0.121 0.879 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 -27.471 -10.569 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.257 5.257 4 O -0.143 6.143 5 C -0.108 4.108 6 C 0.312 3.688 7 O -0.392 6.392 8 C -0.001 4.001 9 N -0.401 5.401 10 C 0.404 3.596 11 O -0.452 6.452 12 N -0.319 5.319 13 C -0.040 4.040 14 C -0.112 4.112 15 C -0.240 4.240 16 C 0.092 3.908 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.198 4.198 27 C -0.087 4.087 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.242 0.758 39 H 0.234 0.766 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.723 -26.595 -11.146 29.610 hybrid contribution 0.430 -0.584 1.373 1.553 sum -6.293 -27.180 -9.773 29.561 Atomic orbital electron populations 1.22136 0.94509 1.02805 1.03317 1.21738 0.95563 0.79495 1.03502 1.50145 1.58834 1.13283 1.03483 1.90698 1.23186 1.74853 1.25589 1.23492 0.81693 1.02017 1.03601 1.20767 0.78246 0.88334 0.81459 1.90753 1.46039 1.72412 1.30023 1.20781 1.03067 0.89944 0.86294 1.44738 1.69366 1.13240 1.12766 1.15804 0.79199 0.80984 0.83578 1.90935 1.49980 1.60437 1.43862 1.42241 1.61137 1.16678 1.11830 1.17040 1.07932 0.83166 0.95834 1.20459 0.98797 0.96685 0.95245 1.20951 1.08828 0.93293 1.00887 1.19419 0.92755 0.85745 0.92872 1.83994 1.64944 1.22793 1.36410 1.21308 1.35061 1.00195 0.90158 0.89107 1.25279 0.97018 0.94700 0.99596 1.70051 1.41707 1.03842 1.34187 0.85718 0.79371 0.78087 0.80267 1.19945 1.20315 1.19244 1.20152 1.07251 0.96877 0.95548 1.20777 0.98487 0.90697 0.98727 0.91901 0.90959 0.91402 0.89255 0.89656 0.92421 0.92609 0.86898 0.87692 0.88578 0.75770 0.76641 0.87195 0.85126 0.92080 0.86145 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.04 37.16 0.37 -0.59 16 2 C 0.12 0.66 6.38 -4.04 -0.03 0.63 16 3 N -0.48 -3.63 3.02 -60.29 -0.18 -3.81 16 4 O -0.14 -0.98 10.84 -11.47 -0.12 -1.11 16 5 C -0.01 -0.05 11.44 101.05 1.16 1.11 16 6 C 0.52 4.89 7.63 -10.99 -0.08 4.80 16 7 O -0.52 -5.80 14.74 5.55 0.08 -5.72 16 8 C 0.13 1.26 5.46 -5.20 -0.03 1.23 16 9 N -0.74 -8.38 5.53 -66.41 -0.37 -8.75 16 10 C 0.70 10.54 8.41 -86.91 -0.73 9.80 16 11 O -0.58 -10.71 13.78 5.29 0.07 -10.64 16 12 N -0.67 -9.67 5.34 -14.18 -0.08 -9.75 16 13 C 0.05 0.97 6.30 -83.62 -0.53 0.44 16 14 C -0.09 -1.68 9.96 -39.42 -0.39 -2.07 16 15 C -0.22 -4.78 9.16 -39.42 -0.36 -5.14 16 16 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 17 O -0.18 -5.15 9.76 -0.03 0.00 -5.15 16 18 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 22 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.18 -4.00 9.99 -39.42 -0.39 -4.39 16 27 C -0.07 -1.35 8.69 -39.41 -0.34 -1.69 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.52 7.34 -51.93 -0.38 0.14 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.48 7.90 -51.93 -0.41 0.07 16 33 H 0.06 0.28 7.13 -51.93 -0.37 -0.09 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.10 0.91 7.13 -51.93 -0.37 0.54 16 38 H 0.41 4.01 7.46 -40.82 -0.30 3.70 16 39 H 0.40 4.32 8.84 -40.82 -0.36 3.96 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.13 2.80 5.63 -52.48 -0.30 2.51 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 44 H 0.13 2.60 6.23 -52.49 -0.33 2.27 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -35.14 378.75 -6.18 -41.32 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.61 Total: 9.31 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.42 Total: -2.26 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.13 Total: -47.09 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.03 Total: -22.61 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.14 -6.18 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332119818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.085 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds