Wall clock time and date at job start Tue Mar 31 2020 20:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99900 * 2 1 4 4 O 1.20824 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99842 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.82514 * 304.30058 * 5 3 2 7 7 O 1.43241 * 109.83108 * 183.41488 * 5 3 2 8 8 C 1.43645 * 109.96909 * 242.11046 * 7 5 3 9 9 H 1.09002 * 110.31079 * 94.48926 * 8 7 5 10 10 C 1.50703 * 110.30663 * 216.65532 * 8 7 5 11 11 O 1.21290 * 120.00114 * 3.54706 * 10 8 7 12 12 N 1.34776 * 119.99835 * 183.54398 * 10 8 7 13 13 C 1.40163 * 119.99748 * 179.97438 * 12 10 8 14 14 C 1.40403 * 125.97191 * 359.72458 * 13 12 10 15 15 C 1.35250 * 107.86462 * 179.82246 * 14 13 12 16 16 N 1.34959 * 107.85702 * 0.42868 * 15 14 13 17 17 C 1.46505 * 125.97381 * 179.68878 * 16 15 14 18 18 C 1.50704 * 109.46977 * 125.01695 * 17 16 15 19 19 H 1.08001 * 120.00254 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99796 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99742 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00016 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47254 * 90.00623 * 22 20 18 24 24 H 1.48508 * 109.47346 * 210.00023 * 22 20 18 25 25 H 1.48501 * 109.47642 * 330.00370 * 22 20 18 26 26 N 1.31219 * 125.96951 * 180.02562 * 13 12 10 27 27 C 1.54947 * 105.13588 * 335.57051 * 8 7 5 28 28 C 1.54377 * 109.90513 * 65.23565 * 5 3 2 29 29 H 1.09002 * 110.84786 * 22.72300 * 28 5 3 30 30 C 1.52999 * 110.85085 * 259.10509 * 28 5 3 31 31 H 1.09002 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46955 * 299.99683 * 1 2 3 33 33 H 1.08999 * 109.47158 * 59.99752 * 1 2 3 34 34 H 0.96995 * 119.99933 * 0.02562 * 12 10 8 35 35 H 1.07997 * 126.07346 * 359.97438 * 14 13 12 36 36 H 1.07997 * 126.06666 * 180.17605 * 15 14 13 37 37 H 1.08996 * 109.47566 * 245.01727 * 17 16 15 38 38 H 1.09005 * 109.46620 * 5.02172 * 17 16 15 39 39 H 0.97002 * 120.00109 * 179.97438 * 21 20 18 40 40 H 1.09001 * 111.12484 * 154.37238 * 27 8 7 41 41 H 1.09006 * 111.12343 * 278.48169 * 27 8 7 42 42 H 1.08994 * 109.47175 * 59.99693 * 30 28 5 43 43 H 1.08994 * 109.47140 * 180.02562 * 30 28 5 44 44 H 1.09002 * 109.46996 * 299.99723 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9661 0.7169 0.8462 7 8 3.9813 2.6435 0.0798 8 6 4.7236 3.0009 -1.0969 9 1 4.0650 3.4579 -1.8355 10 6 5.8456 3.9422 -0.7415 11 8 6.0478 4.2344 0.4182 12 7 6.6245 4.4592 -1.7124 13 6 7.6676 5.3351 -1.3819 14 6 8.0081 5.7612 -0.0881 15 6 9.0685 6.5944 -0.1914 16 7 9.3843 6.7022 -1.4990 17 6 10.4689 7.5128 -2.0584 18 6 11.3655 6.6409 -2.8993 19 1 11.1488 5.5883 -3.0066 20 6 12.4624 7.1869 -3.5315 21 7 13.2444 6.4261 -4.2657 22 14 12.8367 9.0076 -3.3463 23 1 13.7221 9.2140 -2.1721 24 1 13.5165 9.5003 -4.5713 25 1 11.5695 9.7560 -3.1484 26 7 8.4933 5.9044 -2.2281 27 6 5.2930 1.6651 -1.6374 28 6 4.1225 0.6954 -1.3190 29 1 3.3682 0.7267 -2.1052 30 6 4.6374 -0.7305 -1.1128 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 6.4626 4.2258 -2.6398 35 1 7.5129 5.4728 0.8273 36 1 9.5704 7.0890 0.6270 37 1 10.0483 8.3052 -2.6774 38 1 11.0481 7.9541 -1.2472 39 1 14.0159 6.8103 -4.7108 40 1 5.4758 1.7215 -2.7104 41 1 6.1982 1.3786 -1.1018 42 1 3.8214 -1.3651 -0.7673 43 1 5.0245 -1.1169 -2.0555 44 1 5.4337 -0.7252 -0.3684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456668227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:13 Heat of formation + Delta-G solvation = -70.360317 kcal Electronic energy + Delta-G solvation = -28579.494641 eV Core-core repulsion = 24306.845282 eV Total energy + Delta-G solvation = -4272.649359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.43728 -40.75706 -39.96159 -38.59627 -36.76039 -34.91996 -34.14995 -33.34569 -31.75455 -30.82732 -29.43172 -28.68257 -27.23086 -27.01178 -24.94735 -22.68855 -21.86220 -21.73039 -20.99513 -20.12194 -19.63252 -18.54399 -17.43834 -17.28908 -17.15844 -16.84233 -16.78230 -16.18619 -15.63020 -15.48909 -15.04729 -14.56566 -14.47350 -14.10458 -13.99686 -13.78695 -13.53129 -13.27816 -13.12992 -12.86183 -12.68121 -12.55743 -12.37966 -12.35704 -12.15944 -11.93018 -11.67028 -11.40738 -11.21640 -11.16486 -11.04539 -10.77966 -10.67635 -10.22703 -10.05069 -10.01857 -9.57734 -9.50958 -8.78365 -8.23429 -7.57227 -6.25383 -4.27722 1.75031 1.95382 2.18440 2.53712 2.79585 3.14299 3.21476 3.22374 3.34192 3.60429 3.63614 3.83032 4.11760 4.21399 4.23111 4.42634 4.46011 4.62819 4.69009 4.74059 4.77471 4.85405 5.02493 5.07069 5.10932 5.17528 5.35461 5.39692 5.42117 5.57081 5.65839 5.74526 5.91112 6.11903 6.16982 6.36746 6.40925 6.55013 6.64044 7.22006 7.28459 7.34963 7.51760 7.78253 8.14049 8.31206 8.51826 8.83938 9.29606 10.87245 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.002007 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.848468 B =13945.608236 C =14495.985444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.447 3.553 4 O -0.486 6.486 5 C 0.093 3.907 6 H 0.127 0.873 7 O -0.316 6.316 8 C 0.067 3.933 9 H 0.106 0.894 10 C 0.521 3.479 11 O -0.494 6.494 12 N -0.626 5.626 13 C 0.261 3.739 14 C -0.284 4.284 15 C 0.052 3.948 16 N -0.318 5.318 17 C 0.231 3.769 18 C -0.535 4.535 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.887 5.887 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.295 5.295 27 C -0.144 4.144 28 C -0.108 4.108 29 H 0.095 0.905 30 C -0.144 4.144 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.268 0.732 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 -14.761 6.299 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.288 3.712 4 O -0.372 6.372 5 C 0.034 3.966 6 H 0.145 0.855 7 O -0.233 6.233 8 C 0.006 3.994 9 H 0.124 0.876 10 C 0.305 3.695 11 O -0.365 6.365 12 N -0.275 5.275 13 C 0.007 3.993 14 C -0.315 4.315 15 C -0.097 4.097 16 N -0.100 5.100 17 C 0.113 3.887 18 C -0.573 4.573 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.525 5.525 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.126 5.126 27 C -0.182 4.182 28 C -0.127 4.127 29 H 0.113 0.887 30 C -0.202 4.202 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.247 0.753 35 H 0.179 0.821 36 H 0.187 0.813 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.642 -13.905 5.947 26.402 hybrid contribution -0.172 0.768 0.170 0.805 sum -21.813 -13.137 6.118 26.188 Atomic orbital electron populations 1.23303 0.76013 1.03826 1.02742 1.86484 1.23599 1.33040 1.84245 1.24146 0.92204 0.81771 0.73113 1.90710 1.66655 1.36310 1.43476 1.22424 0.86892 0.85478 1.01854 0.85528 1.88675 1.70936 1.24787 1.38909 1.22850 0.92348 0.95724 0.88525 0.87607 1.20140 0.82499 0.81289 0.85540 1.90681 1.68827 1.58022 1.18968 1.42268 1.29682 1.44864 1.10734 1.19047 0.91529 0.95670 0.93024 1.21557 1.03667 1.08498 0.97755 1.22567 0.98029 1.00923 0.88194 1.48622 1.24036 1.33841 1.03464 1.20065 0.82784 0.90420 0.95477 1.21100 1.08721 0.97647 1.29803 0.89633 1.24831 0.95495 0.97985 0.94450 1.69869 1.15685 1.35834 1.31066 0.86908 0.79293 0.85395 0.78510 1.19705 1.20523 1.18862 1.77393 1.04677 1.11978 1.18527 1.23467 0.99096 0.91714 1.03925 1.22649 0.97713 0.97147 0.95197 0.88667 1.21771 1.01865 0.93429 1.03095 0.87857 0.91765 0.91813 0.75261 0.82095 0.81301 0.93981 0.93280 0.92169 0.87746 0.88424 0.91123 0.91183 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.81 10.57 -39.25 -0.41 -3.22 16 3 C 0.45 4.53 7.15 36.01 0.26 4.78 16 4 O -0.49 -6.67 16.27 -25.40 -0.41 -7.08 16 5 C 0.09 0.83 3.66 -27.16 -0.10 0.73 16 6 H 0.13 0.92 7.81 -51.93 -0.41 0.51 16 7 O -0.32 -3.98 9.82 -64.44 -0.63 -4.61 16 8 C 0.07 0.69 3.86 -26.85 -0.10 0.59 16 9 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 10 C 0.52 7.46 7.14 -10.98 -0.08 7.38 16 11 O -0.49 -8.94 13.68 -13.78 -0.19 -9.13 16 12 N -0.63 -9.22 5.45 -11.13 -0.06 -9.28 16 13 C 0.26 5.08 8.11 -154.39 -1.25 3.83 16 14 C -0.28 -5.49 9.61 -39.83 -0.38 -5.87 16 15 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 16 N -0.32 -7.11 3.67 -62.56 -0.23 -7.34 16 17 C 0.23 5.42 5.33 -5.19 -0.03 5.40 16 18 C -0.53 -14.90 9.79 -34.44 -0.34 -15.24 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 20 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 22 Si 0.87 19.96 27.47 -169.99 -4.67 15.29 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 26 N -0.30 -6.62 12.42 31.44 0.39 -6.23 16 27 C -0.14 -1.01 6.02 -24.48 -0.15 -1.16 16 28 C -0.11 -0.66 3.11 -88.68 -0.28 -0.94 16 29 H 0.10 0.51 7.85 -51.93 -0.41 0.11 16 30 C -0.14 -0.66 9.15 37.16 0.34 -0.32 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 33 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 34 H 0.41 4.71 8.82 -40.82 -0.36 4.35 16 35 H 0.16 3.06 5.92 -52.49 -0.31 2.75 16 36 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 37 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 38 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.75 7.91 -51.93 -0.41 0.34 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -37.37 376.95 -7.15 -44.51 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.05 Total: 3.68 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.33 Total: 3.26 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.87 Total: -48.37 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.65 Total: -24.05 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.37 -7.15 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456668227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.847 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds