Wall clock time and date at job start Tue Mar 31 2020 20:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99900 * 2 1 4 4 O 1.20824 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99842 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.82514 * 304.30058 * 5 3 2 7 7 O 1.43241 * 109.83108 * 183.41488 * 5 3 2 8 8 C 1.43645 * 109.96909 * 242.11046 * 7 5 3 9 9 H 1.09002 * 110.31079 * 94.48926 * 8 7 5 10 10 C 1.50703 * 110.30663 * 216.65532 * 8 7 5 11 11 O 1.21290 * 120.00114 * 3.54706 * 10 8 7 12 12 N 1.34776 * 119.99835 * 183.54398 * 10 8 7 13 13 C 1.40163 * 119.99748 * 179.97438 * 12 10 8 14 14 C 1.40403 * 125.97191 * 359.72458 * 13 12 10 15 15 C 1.35250 * 107.86462 * 179.82246 * 14 13 12 16 16 N 1.34959 * 107.85702 * 0.42868 * 15 14 13 17 17 C 1.46505 * 125.97381 * 179.68878 * 16 15 14 18 18 C 1.50704 * 109.46977 * 125.01695 * 17 16 15 19 19 H 1.08001 * 120.00254 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99796 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99742 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00016 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47254 * 90.00623 * 22 20 18 24 24 H 1.48508 * 109.47346 * 210.00023 * 22 20 18 25 25 H 1.48501 * 109.47642 * 330.00370 * 22 20 18 26 26 N 1.31219 * 125.96951 * 180.02562 * 13 12 10 27 27 C 1.54947 * 105.13588 * 335.57051 * 8 7 5 28 28 C 1.54377 * 109.90513 * 65.23565 * 5 3 2 29 29 H 1.09002 * 110.84786 * 22.72300 * 28 5 3 30 30 C 1.52999 * 110.85085 * 259.10509 * 28 5 3 31 31 H 1.09002 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46955 * 299.99683 * 1 2 3 33 33 H 1.08999 * 109.47158 * 59.99752 * 1 2 3 34 34 H 0.96995 * 119.99933 * 0.02562 * 12 10 8 35 35 H 1.07997 * 126.07346 * 359.97438 * 14 13 12 36 36 H 1.07997 * 126.06666 * 180.17605 * 15 14 13 37 37 H 1.08996 * 109.47566 * 245.01727 * 17 16 15 38 38 H 1.09005 * 109.46620 * 5.02172 * 17 16 15 39 39 H 0.97002 * 120.00109 * 179.97438 * 21 20 18 40 40 H 1.09001 * 111.12484 * 154.37238 * 27 8 7 41 41 H 1.09006 * 111.12343 * 278.48169 * 27 8 7 42 42 H 1.08994 * 109.47175 * 59.99693 * 30 28 5 43 43 H 1.08994 * 109.47140 * 180.02562 * 30 28 5 44 44 H 1.09002 * 109.46996 * 299.99723 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9661 0.7169 0.8462 7 8 3.9813 2.6435 0.0798 8 6 4.7236 3.0009 -1.0969 9 1 4.0650 3.4579 -1.8355 10 6 5.8456 3.9422 -0.7415 11 8 6.0478 4.2344 0.4182 12 7 6.6245 4.4592 -1.7124 13 6 7.6676 5.3351 -1.3819 14 6 8.0081 5.7612 -0.0881 15 6 9.0685 6.5944 -0.1914 16 7 9.3843 6.7022 -1.4990 17 6 10.4689 7.5128 -2.0584 18 6 11.3655 6.6409 -2.8993 19 1 11.1488 5.5883 -3.0066 20 6 12.4624 7.1869 -3.5315 21 7 13.2444 6.4261 -4.2657 22 14 12.8367 9.0076 -3.3463 23 1 13.7221 9.2140 -2.1721 24 1 13.5165 9.5003 -4.5713 25 1 11.5695 9.7560 -3.1484 26 7 8.4933 5.9044 -2.2281 27 6 5.2930 1.6651 -1.6374 28 6 4.1225 0.6954 -1.3190 29 1 3.3682 0.7267 -2.1052 30 6 4.6374 -0.7305 -1.1128 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 6.4626 4.2258 -2.6398 35 1 7.5129 5.4728 0.8273 36 1 9.5704 7.0890 0.6270 37 1 10.0483 8.3052 -2.6774 38 1 11.0481 7.9541 -1.2472 39 1 14.0159 6.8103 -4.7108 40 1 5.4758 1.7215 -2.7104 41 1 6.1982 1.3786 -1.1018 42 1 3.8214 -1.3651 -0.7673 43 1 5.0245 -1.1169 -2.0555 44 1 5.4337 -0.7252 -0.3684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456668227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:12 Heat of formation + Delta-G solvation = -96.099967 kcal Electronic energy + Delta-G solvation = -28580.610796 eV Core-core repulsion = 24306.845282 eV Total energy + Delta-G solvation = -4273.765514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40777 -42.00326 -40.97991 -39.63749 -37.52390 -36.31079 -35.25297 -34.78804 -33.31113 -31.92243 -30.97708 -29.36867 -28.85462 -27.54231 -25.93676 -24.38491 -22.97554 -22.43555 -22.02558 -21.45201 -20.90690 -19.29027 -19.09375 -18.47852 -18.16510 -18.04896 -17.53873 -17.38946 -16.84184 -16.60176 -16.34695 -15.93416 -15.61832 -15.17520 -14.88395 -14.77501 -14.66325 -14.37989 -14.35462 -13.90042 -13.86775 -13.83527 -13.39229 -13.33923 -13.05699 -12.93513 -12.53820 -12.50632 -12.33120 -12.16694 -11.92210 -11.84749 -11.83044 -11.78542 -11.63396 -11.46569 -11.05334 -10.86179 -10.67469 -9.79798 -9.14461 -8.36752 -6.46727 0.84544 0.98989 1.08130 1.35889 1.37762 1.40075 1.48908 1.53651 2.13790 2.18319 2.29547 2.71864 2.95832 3.08183 3.41386 3.52531 3.66509 3.84308 3.91713 4.02309 4.04585 4.19399 4.30002 4.31814 4.40768 4.49335 4.60141 4.70581 4.71599 4.74099 4.84997 4.87997 4.88596 5.02838 5.09752 5.13059 5.24275 5.24923 5.41629 5.47837 5.84259 5.99618 6.18128 6.39778 6.58785 6.62272 6.91263 7.04152 7.16061 8.80082 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.002007 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.848468 B =13945.608236 C =14495.985444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.452 3.548 4 O -0.530 6.530 5 C 0.086 3.914 6 H 0.141 0.859 7 O -0.352 6.352 8 C 0.070 3.930 9 H 0.128 0.872 10 C 0.522 3.478 11 O -0.534 6.534 12 N -0.617 5.617 13 C 0.266 3.734 14 C -0.297 4.297 15 C 0.062 3.938 16 N -0.343 5.343 17 C 0.238 3.762 18 C -0.546 4.546 19 H 0.029 0.971 20 C 0.015 3.985 21 N -0.940 5.940 22 Si 0.954 3.046 23 H -0.254 1.254 24 H -0.281 1.281 25 H -0.240 1.240 26 N -0.342 5.342 27 C -0.138 4.138 28 C -0.096 4.096 29 H 0.108 0.892 30 C -0.142 4.142 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.427 0.573 35 H 0.164 0.836 36 H 0.211 0.789 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.272 0.728 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.931 -14.644 6.662 28.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.295 3.705 4 O -0.418 6.418 5 C 0.027 3.973 6 H 0.158 0.842 7 O -0.269 6.269 8 C 0.010 3.990 9 H 0.146 0.854 10 C 0.309 3.691 11 O -0.408 6.408 12 N -0.268 5.268 13 C 0.011 3.989 14 C -0.328 4.328 15 C -0.086 4.086 16 N -0.125 5.125 17 C 0.119 3.881 18 C -0.584 4.584 19 H 0.047 0.953 20 C -0.184 4.184 21 N -0.579 5.579 22 Si 0.775 3.225 23 H -0.178 1.178 24 H -0.206 1.206 25 H -0.163 1.163 26 N -0.172 5.172 27 C -0.176 4.176 28 C -0.114 4.114 29 H 0.126 0.874 30 C -0.199 4.199 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.265 0.735 35 H 0.182 0.818 36 H 0.227 0.773 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.531 -13.844 6.305 27.185 hybrid contribution -0.033 0.536 0.112 0.549 sum -22.564 -13.308 6.417 26.970 Atomic orbital electron populations 1.23597 0.74599 1.05975 1.02446 1.86483 1.24953 1.31687 1.83533 1.24399 0.92621 0.81681 0.71812 1.90692 1.67620 1.37755 1.45780 1.22707 0.86281 0.84257 1.04039 0.84228 1.88632 1.71280 1.26900 1.40120 1.22967 0.91191 0.96463 0.88410 0.85420 1.20977 0.82590 0.80819 0.84721 1.90650 1.70007 1.59480 1.20685 1.42371 1.28544 1.43914 1.11960 1.19418 0.91467 0.95066 0.92900 1.21746 1.04204 1.09027 0.97847 1.23236 0.97469 0.99978 0.87913 1.48523 1.24494 1.34917 1.04522 1.19910 0.82628 0.89693 0.95892 1.21216 1.10129 0.95882 1.31168 0.95296 1.25891 0.94863 1.04058 0.93559 1.70041 1.16617 1.38726 1.32544 0.85641 0.80148 0.77855 0.78887 1.17843 1.20640 1.16347 1.77313 1.06077 1.13774 1.20067 1.23540 0.98951 0.89695 1.05395 1.22659 0.97339 0.97580 0.93862 0.87405 1.21779 1.02039 0.92286 1.03770 0.84461 0.92393 0.91889 0.73459 0.81821 0.77279 0.93624 0.90096 0.91888 0.84897 0.89090 0.90462 0.89965 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.97 10.57 -51.37 -0.54 -5.51 16 3 C 0.45 8.80 7.15 71.24 0.51 9.31 16 4 O -0.53 -14.59 16.27 28.33 0.46 -14.13 16 5 C 0.09 1.44 3.66 30.32 0.11 1.55 16 6 H 0.14 1.89 7.81 -2.39 -0.02 1.87 16 7 O -0.35 -8.74 9.82 -121.05 -1.19 -9.93 16 8 C 0.07 1.38 3.86 30.51 0.12 1.50 16 9 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 10 C 0.52 14.82 7.14 87.66 0.63 15.45 16 11 O -0.53 -19.59 13.68 15.42 0.21 -19.38 16 12 N -0.62 -18.01 5.45 -307.51 -1.68 -19.69 16 13 C 0.27 10.44 8.11 133.32 1.08 11.52 16 14 C -0.30 -11.43 9.61 22.11 0.21 -11.22 16 15 C 0.06 2.30 11.44 83.52 0.96 3.26 16 16 N -0.34 -15.24 3.67 -351.83 -1.29 -16.53 16 17 C 0.24 10.94 5.33 85.63 0.46 11.39 16 18 C -0.55 -31.11 9.79 25.60 0.25 -30.86 16 19 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 20 C 0.02 0.85 5.47 84.66 0.46 1.32 16 21 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 22 Si 0.95 40.35 27.47 68.60 1.88 42.24 16 23 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 26 N -0.34 -15.58 12.42 -54.45 -0.68 -16.26 16 27 C -0.14 -1.66 6.02 32.05 0.19 -1.47 16 28 C -0.10 -0.96 3.11 -9.54 -0.03 -0.99 16 29 H 0.11 0.85 7.85 -2.39 -0.02 0.83 16 30 C -0.14 -0.93 9.15 71.98 0.66 -0.27 16 31 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.64 8.13 -2.38 -0.02 0.62 16 33 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 34 H 0.43 9.51 8.82 -92.71 -0.82 8.69 16 35 H 0.16 6.23 5.92 -2.91 -0.02 6.22 16 36 H 0.21 5.71 8.06 -2.91 -0.02 5.69 16 37 H 0.05 2.05 7.20 -2.39 -0.02 2.04 16 38 H 0.08 3.19 7.50 -2.38 -0.02 3.17 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.26 7.91 -2.38 -0.02 1.24 16 42 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.06 0.47 8.10 -2.39 -0.02 0.45 16 Total: -1.00 -85.96 376.95 4.45 -81.51 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.17 Total: 22.70 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.80 Total: 11.94 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.34 Total: -109.44 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -1.06 Total: -48.95 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.24 kcal Total: -85.96 4.45 -81.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456668227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.587 kcal (2) G-P(sol) polarization free energy of solvation -85.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds