Wall clock time and date at job start Tue Mar 31 2020 21:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35977 * 116.99831 * 2 1 4 4 C 1.38555 * 120.08333 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.01032 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.18145 * 359.97438 * 5 4 3 7 7 N 1.48029 * 119.91507 * 180.02562 * 6 5 4 8 8 O 1.21789 * 120.00195 * 359.97438 * 7 6 5 9 9 O 1.21803 * 119.99724 * 179.97438 * 7 6 5 10 10 C 1.38199 * 120.16541 * 359.76626 * 6 5 4 11 11 C 1.38719 * 119.98295 * 0.48919 * 10 6 5 12 12 N 1.40124 * 120.09111 * 179.76694 * 11 10 6 13 13 C 1.34780 * 119.99428 * 332.91983 * 12 11 10 14 14 O 1.21288 * 120.00224 * 4.61129 * 13 12 11 15 15 C 1.50706 * 119.99621 * 184.61308 * 13 12 11 16 16 C 1.52996 * 109.47043 * 179.97438 * 15 13 12 17 17 N 1.46899 * 109.47260 * 179.97438 * 16 15 13 18 18 C 1.46898 * 111.00148 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.47499 * 325.00398 * 18 17 16 20 20 C 1.53002 * 109.46988 * 85.00236 * 18 17 16 21 21 C 1.50705 * 109.47168 * 205.00323 * 18 17 16 22 22 H 1.07993 * 119.99879 * 356.42330 * 21 18 17 23 23 C 1.37879 * 119.99915 * 176.42481 * 21 18 17 24 24 N 1.31508 * 119.99820 * 353.63219 * 23 21 18 25 25 Si 1.86800 * 119.99854 * 173.91076 * 23 21 18 26 26 H 1.48500 * 109.46981 * 264.76333 * 25 23 21 27 27 H 1.48498 * 109.47168 * 24.76229 * 25 23 21 28 28 H 1.48501 * 109.47092 * 144.76471 * 25 23 21 29 29 H 1.09001 * 109.47187 * 300.00363 * 1 2 3 30 30 H 1.09007 * 109.47171 * 60.00336 * 1 2 3 31 31 H 1.08998 * 109.46947 * 179.97438 * 1 2 3 32 32 H 1.07992 * 119.98887 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.90386 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.00454 * 180.25553 * 10 6 5 35 35 H 0.96998 * 120.00628 * 152.92143 * 12 11 10 36 36 H 1.09006 * 109.46981 * 60.00174 * 15 13 12 37 37 H 1.08996 * 109.47338 * 300.00014 * 15 13 12 38 38 H 1.09006 * 109.46757 * 60.00444 * 16 15 13 39 39 H 1.08996 * 109.47710 * 300.00832 * 16 15 13 40 40 H 1.00899 * 111.00134 * 303.96417 * 17 16 15 41 41 H 1.09000 * 109.47267 * 297.91130 * 20 18 17 42 42 H 1.09001 * 109.46885 * 57.91787 * 20 18 17 43 43 H 1.08998 * 109.47081 * 177.91076 * 20 18 17 44 44 H 0.97007 * 119.99793 * 180.27974 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3032 3.6807 0.0016 7 7 3.9707 5.0019 0.0028 8 8 3.3040 6.0210 0.0027 9 8 5.1869 5.0697 0.0037 10 6 4.0614 2.5253 0.0065 11 6 3.4373 1.2864 0.0006 12 7 4.2039 0.1135 0.0006 13 6 5.4447 0.1195 -0.5257 14 8 5.9298 1.1577 -0.9231 15 6 6.2292 -1.1637 -0.6204 16 6 7.5943 -0.8816 -1.2511 17 7 8.3592 -2.1323 -1.3428 18 6 9.6790 -1.8993 -1.9445 19 1 9.5998 -1.1220 -2.7044 20 6 10.6624 -1.4543 -0.8602 21 6 10.1738 -3.1736 -2.5791 22 1 9.5955 -4.0812 -2.4897 23 6 11.3647 -3.1805 -3.2738 24 7 12.0062 -2.0530 -3.4902 25 14 12.0631 -4.7903 -3.9142 26 1 13.0443 -5.3275 -2.9375 27 1 10.9617 -5.7691 -4.0987 28 1 12.7385 -4.5540 -5.2154 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2148 2.3195 0.0005 33 1 1.3339 4.5112 0.0019 34 1 5.1397 2.5869 0.0111 35 1 3.8417 -0.7027 0.3793 36 1 5.6845 -1.8778 -1.2382 37 1 6.3685 -1.5789 0.3777 38 1 8.1391 -0.1674 -0.6336 39 1 7.4547 -0.4665 -2.2492 40 1 8.4468 -2.5698 -0.4379 41 1 10.3239 -0.5132 -0.4267 42 1 10.7136 -2.2154 -0.0816 43 1 11.6503 -1.3172 -1.2998 44 1 12.8421 -2.0574 -3.9825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460313114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:35 Heat of formation + Delta-G solvation = -42.081958 kcal Electronic energy + Delta-G solvation = -28309.336052 eV Core-core repulsion = 24037.912934 eV Total energy + Delta-G solvation = -4271.423118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.33914 -41.36528 -39.94249 -38.05682 -36.64039 -36.21448 -35.28329 -33.06475 -31.61581 -31.38468 -30.15769 -28.39050 -27.36816 -26.21259 -25.11041 -24.13298 -22.68393 -22.15384 -20.57600 -20.23058 -19.73391 -18.87390 -18.76869 -17.63305 -17.49517 -17.11121 -16.69244 -16.31398 -16.24279 -15.78473 -14.98560 -14.76207 -14.59874 -14.41311 -14.05406 -13.92678 -13.62151 -13.27346 -13.03699 -12.88326 -12.24684 -12.14999 -12.00612 -11.67602 -11.65751 -11.64261 -11.34966 -11.20990 -11.13189 -11.12587 -10.88212 -10.72600 -10.45156 -10.16373 -10.06031 -9.78851 -9.58529 -9.01810 -8.62940 -8.33144 -7.29977 -5.97818 -3.99332 -0.37937 0.41996 1.07976 1.24115 2.26098 2.30381 2.55781 2.89908 3.33346 3.40319 3.44043 3.87657 4.03105 4.25419 4.28271 4.42433 4.46262 4.47234 4.59713 4.81627 4.94293 4.98268 5.08847 5.22103 5.25548 5.34546 5.34793 5.56431 5.68676 5.72775 5.97206 6.20852 6.28609 6.44211 6.48446 6.68978 6.80367 6.93757 7.06935 7.35493 7.54252 7.66127 7.79225 7.88585 8.23402 8.51310 8.60187 9.07068 9.64834 11.11077 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002193 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.001696 B =12766.529172 C =14275.453974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.148 3.852 4 C -0.190 4.190 5 C -0.035 4.035 6 C -0.061 4.061 7 N 0.034 4.966 8 O -0.169 6.169 9 O -0.151 6.151 10 C -0.042 4.042 11 C 0.131 3.869 12 N -0.666 5.666 13 C 0.516 3.484 14 O -0.509 6.509 15 C -0.133 4.133 16 C 0.073 3.927 17 N -0.685 5.685 18 C 0.210 3.790 19 H 0.040 0.960 20 C -0.165 4.165 21 C -0.497 4.497 22 H 0.062 0.938 23 C 0.056 3.944 24 N -0.895 5.895 25 Si 0.895 3.105 26 H -0.283 1.283 27 H -0.274 1.274 28 H -0.288 1.288 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.190 0.810 35 H 0.421 0.579 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.323 0.677 41 H 0.010 0.990 42 H 0.028 0.972 43 H 0.077 0.923 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.885 5.764 11.074 30.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.099 3.901 4 C -0.210 4.210 5 C -0.055 4.055 6 C -0.145 4.145 7 N 0.553 4.447 8 O -0.383 6.383 9 O -0.369 6.369 10 C -0.063 4.063 11 C 0.034 3.966 12 N -0.312 5.312 13 C 0.305 3.695 14 O -0.383 6.383 15 C -0.173 4.173 16 C -0.057 4.057 17 N -0.314 5.314 18 C 0.103 3.897 19 H 0.058 0.942 20 C -0.224 4.224 21 C -0.536 4.536 22 H 0.081 0.919 23 C -0.145 4.145 24 N -0.534 5.534 25 Si 0.724 3.276 26 H -0.209 1.209 27 H -0.199 1.199 28 H -0.214 1.214 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.206 0.794 35 H 0.258 0.742 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.029 0.971 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -27.848 5.478 10.048 30.108 hybrid contribution 0.558 -0.279 0.553 0.833 sum -27.291 5.200 10.601 29.736 Atomic orbital electron populations 1.23261 0.76804 1.05091 1.02010 1.86096 1.22685 1.25467 1.87498 1.19047 0.90490 0.85654 0.94898 1.21008 1.00974 0.90146 1.08898 1.20774 0.91500 0.99553 0.93686 1.20799 0.92845 0.83270 1.17576 1.43456 1.01202 1.02609 0.97473 1.94504 1.65231 1.24522 1.54010 1.94611 0.95500 1.93798 1.52966 1.21357 1.04210 0.87726 0.93030 1.16760 0.86816 0.87312 1.05758 1.43549 1.16077 1.11107 1.60427 1.21385 0.80312 0.92434 0.75387 1.90683 1.68201 1.33383 1.46057 1.21712 0.98016 0.93602 1.03981 1.21642 0.90562 0.93058 1.00481 1.60845 1.21315 1.22039 1.27226 1.19185 0.81394 0.97237 0.91887 0.94231 1.22380 1.04542 0.96486 0.99038 1.21122 1.04696 0.95481 1.32308 0.91947 1.24965 0.97181 0.96277 0.96084 1.69951 1.16985 1.25237 1.41274 0.86527 0.79098 0.83909 0.78111 1.20895 1.19867 1.21393 0.91903 0.91850 0.87252 0.82739 0.82612 0.79366 0.74181 0.87449 0.88651 0.95258 0.90780 0.86111 0.97109 0.95239 0.90418 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 101.05 0.99 1.04 16 2 O -0.31 -1.81 9.94 -19.67 -0.20 -2.01 16 3 C 0.15 1.11 6.70 -39.07 -0.26 0.85 16 4 C -0.19 -1.13 9.04 -39.46 -0.36 -1.49 16 5 C -0.04 -0.28 9.55 -39.57 -0.38 -0.65 16 6 C -0.06 -0.70 6.85 -79.94 -0.55 -1.24 16 7 N 0.03 0.47 4.45 33.97 0.15 0.62 16 8 O -0.17 -2.31 18.44 -29.46 -0.54 -2.86 16 9 O -0.15 -2.40 18.44 -29.46 -0.54 -2.94 16 10 C -0.04 -0.51 8.29 -39.42 -0.33 -0.83 16 11 C 0.13 1.31 6.45 -83.49 -0.54 0.77 16 12 N -0.67 -6.22 5.27 -9.75 -0.05 -6.27 16 13 C 0.52 6.44 7.72 -10.98 -0.08 6.35 16 14 O -0.51 -8.34 12.97 5.55 0.07 -8.27 16 15 C -0.13 -1.60 5.96 -27.88 -0.17 -1.77 16 16 C 0.07 1.28 4.77 -3.83 -0.02 1.26 16 17 N -0.68 -13.91 6.23 -107.95 -0.67 -14.59 16 18 C 0.21 5.29 2.46 -68.86 -0.17 5.12 16 19 H 0.04 1.12 7.80 -51.93 -0.40 0.72 16 20 C -0.16 -3.95 9.00 37.16 0.33 -3.62 16 21 C -0.50 -13.72 8.79 -34.44 -0.30 -14.02 16 22 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 23 C 0.06 1.56 5.23 -17.82 -0.09 1.47 16 24 N -0.90 -26.08 11.88 55.43 0.66 -25.42 16 25 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.06 0.06 7.66 -51.93 -0.40 -0.34 16 30 H 0.06 0.09 7.66 -51.93 -0.40 -0.31 16 31 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.16 0.39 6.30 -52.49 -0.33 0.05 16 33 H 0.16 0.94 7.60 -52.48 -0.40 0.54 16 34 H 0.19 2.73 5.16 -52.48 -0.27 2.46 16 35 H 0.42 2.69 8.39 -40.82 -0.34 2.35 16 36 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.55 7.43 -51.93 -0.39 0.16 16 39 H 0.07 1.45 8.01 -51.93 -0.42 1.03 16 40 H 0.32 5.97 8.45 -39.29 -0.33 5.64 16 41 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 42 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.08 2.07 6.57 -51.93 -0.34 1.73 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -34.00 376.29 -8.04 -42.04 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.64 Total: 4.33 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.92 Total: -6.75 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.09 Total: -45.66 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.21 Total: -16.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.00 -8.04 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460313114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.045 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds