Wall clock time and date at job start Tue Mar 31 2020 21:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35977 * 116.99831 * 2 1 4 4 C 1.38555 * 120.08333 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.01032 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.18145 * 359.97438 * 5 4 3 7 7 N 1.48029 * 119.91507 * 180.02562 * 6 5 4 8 8 O 1.21789 * 120.00195 * 359.97438 * 7 6 5 9 9 O 1.21803 * 119.99724 * 179.97438 * 7 6 5 10 10 C 1.38199 * 120.16541 * 359.76626 * 6 5 4 11 11 C 1.38719 * 119.98295 * 0.48919 * 10 6 5 12 12 N 1.40124 * 120.09111 * 179.76694 * 11 10 6 13 13 C 1.34780 * 119.99428 * 332.91983 * 12 11 10 14 14 O 1.21288 * 120.00224 * 4.61129 * 13 12 11 15 15 C 1.50706 * 119.99621 * 184.61308 * 13 12 11 16 16 C 1.52996 * 109.47043 * 179.97438 * 15 13 12 17 17 N 1.46899 * 109.47260 * 179.97438 * 16 15 13 18 18 C 1.46898 * 111.00148 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.47499 * 325.00398 * 18 17 16 20 20 C 1.53002 * 109.46988 * 85.00236 * 18 17 16 21 21 C 1.50705 * 109.47168 * 205.00323 * 18 17 16 22 22 H 1.07993 * 119.99879 * 356.42330 * 21 18 17 23 23 C 1.37879 * 119.99915 * 176.42481 * 21 18 17 24 24 N 1.31508 * 119.99820 * 353.63219 * 23 21 18 25 25 Si 1.86800 * 119.99854 * 173.91076 * 23 21 18 26 26 H 1.48500 * 109.46981 * 264.76333 * 25 23 21 27 27 H 1.48498 * 109.47168 * 24.76229 * 25 23 21 28 28 H 1.48501 * 109.47092 * 144.76471 * 25 23 21 29 29 H 1.09001 * 109.47187 * 300.00363 * 1 2 3 30 30 H 1.09007 * 109.47171 * 60.00336 * 1 2 3 31 31 H 1.08998 * 109.46947 * 179.97438 * 1 2 3 32 32 H 1.07992 * 119.98887 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.90386 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.00454 * 180.25553 * 10 6 5 35 35 H 0.96998 * 120.00628 * 152.92143 * 12 11 10 36 36 H 1.09006 * 109.46981 * 60.00174 * 15 13 12 37 37 H 1.08996 * 109.47338 * 300.00014 * 15 13 12 38 38 H 1.09006 * 109.46757 * 60.00444 * 16 15 13 39 39 H 1.08996 * 109.47710 * 300.00832 * 16 15 13 40 40 H 1.00899 * 111.00134 * 303.96417 * 17 16 15 41 41 H 1.09000 * 109.47267 * 297.91130 * 20 18 17 42 42 H 1.09001 * 109.46885 * 57.91787 * 20 18 17 43 43 H 1.08998 * 109.47081 * 177.91076 * 20 18 17 44 44 H 0.97007 * 119.99793 * 180.27974 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3032 3.6807 0.0016 7 7 3.9707 5.0019 0.0028 8 8 3.3040 6.0210 0.0027 9 8 5.1869 5.0697 0.0037 10 6 4.0614 2.5253 0.0065 11 6 3.4373 1.2864 0.0006 12 7 4.2039 0.1135 0.0006 13 6 5.4447 0.1195 -0.5257 14 8 5.9298 1.1577 -0.9231 15 6 6.2292 -1.1637 -0.6204 16 6 7.5943 -0.8816 -1.2511 17 7 8.3592 -2.1323 -1.3428 18 6 9.6790 -1.8993 -1.9445 19 1 9.5998 -1.1220 -2.7044 20 6 10.6624 -1.4543 -0.8602 21 6 10.1738 -3.1736 -2.5791 22 1 9.5955 -4.0812 -2.4897 23 6 11.3647 -3.1805 -3.2738 24 7 12.0062 -2.0530 -3.4902 25 14 12.0631 -4.7903 -3.9142 26 1 13.0443 -5.3275 -2.9375 27 1 10.9617 -5.7691 -4.0987 28 1 12.7385 -4.5540 -5.2154 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2148 2.3195 0.0005 33 1 1.3339 4.5112 0.0019 34 1 5.1397 2.5869 0.0111 35 1 3.8417 -0.7027 0.3793 36 1 5.6845 -1.8778 -1.2382 37 1 6.3685 -1.5789 0.3777 38 1 8.1391 -0.1674 -0.6336 39 1 7.4547 -0.4665 -2.2492 40 1 8.4468 -2.5698 -0.4379 41 1 10.3239 -0.5132 -0.4267 42 1 10.7136 -2.2154 -0.0816 43 1 11.6503 -1.3172 -1.2998 44 1 12.8421 -2.0574 -3.9825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460313114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:34 Heat of formation + Delta-G solvation = -66.787880 kcal Electronic energy + Delta-G solvation = -28310.407381 eV Core-core repulsion = 24037.912934 eV Total energy + Delta-G solvation = -4272.494447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.30934 -42.15388 -40.74614 -38.72361 -37.92119 -37.69070 -36.19736 -34.88143 -32.82766 -32.29284 -31.26507 -28.99006 -28.73972 -27.21969 -26.98426 -25.13281 -23.60073 -23.19116 -22.19425 -21.55087 -20.62217 -19.81826 -19.37866 -18.64423 -18.43588 -18.32419 -17.85757 -17.35840 -16.88683 -16.82321 -16.57343 -15.93778 -15.69442 -15.37198 -15.22532 -14.81406 -14.60656 -14.49105 -14.22326 -13.90190 -13.55772 -13.54687 -13.15531 -12.90410 -12.76088 -12.69180 -12.48802 -12.46075 -12.39658 -12.35860 -12.33914 -12.24766 -12.03541 -11.96396 -11.82918 -11.10209 -10.95689 -10.48284 -10.24955 -9.35627 -9.04444 -8.10881 -6.20736 -1.27880 -0.27341 0.20220 0.35943 1.33727 1.44467 1.44678 1.56441 1.67249 1.89569 2.17824 2.45122 3.19269 3.23412 3.41254 3.48953 3.56087 3.76163 3.77788 4.07163 4.15093 4.31828 4.34645 4.38331 4.43029 4.59622 4.62714 4.69607 4.70437 4.82068 4.83932 4.86416 4.93401 5.00034 5.07732 5.15610 5.28864 5.39510 5.65135 5.75628 5.96159 6.17073 6.21553 6.45447 6.59083 6.83801 6.92019 6.95325 7.48658 8.97369 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002193 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.001696 B =12766.529172 C =14275.453974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.310 6.310 3 C 0.172 3.828 4 C -0.173 4.173 5 C -0.019 4.019 6 C -0.085 4.085 7 N 0.037 4.963 8 O -0.142 6.142 9 O -0.233 6.233 10 C -0.062 4.062 11 C 0.110 3.890 12 N -0.647 5.647 13 C 0.516 3.484 14 O -0.558 6.558 15 C -0.118 4.118 16 C 0.077 3.923 17 N -0.679 5.679 18 C 0.213 3.787 19 H -0.005 1.005 20 C -0.153 4.153 21 C -0.512 4.512 22 H 0.063 0.937 23 C 0.004 3.996 24 N -0.929 5.929 25 Si 0.964 3.036 26 H -0.274 1.274 27 H -0.265 1.265 28 H -0.288 1.288 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.203 0.797 33 H 0.182 0.818 34 H 0.154 0.846 35 H 0.437 0.563 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.013 0.987 39 H 0.043 0.957 40 H 0.338 0.662 41 H 0.022 0.978 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.243 3.486 12.169 34.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.221 6.221 3 C 0.121 3.879 4 C -0.192 4.192 5 C -0.039 4.039 6 C -0.170 4.170 7 N 0.549 4.451 8 O -0.367 6.367 9 O -0.432 6.432 10 C -0.084 4.084 11 C 0.013 3.987 12 N -0.294 5.294 13 C 0.306 3.694 14 O -0.436 6.436 15 C -0.157 4.157 16 C -0.053 4.053 17 N -0.309 5.309 18 C 0.104 3.896 19 H 0.013 0.987 20 C -0.212 4.212 21 C -0.551 4.551 22 H 0.081 0.919 23 C -0.194 4.194 24 N -0.569 5.569 25 Si 0.789 3.211 26 H -0.200 1.200 27 H -0.189 1.189 28 H -0.214 1.214 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.220 0.780 33 H 0.199 0.801 34 H 0.171 0.829 35 H 0.278 0.722 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.031 0.969 39 H 0.062 0.938 40 H 0.156 0.844 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -32.122 3.120 11.184 34.156 hybrid contribution 1.573 0.409 0.232 1.642 sum -30.549 3.530 11.416 32.803 Atomic orbital electron populations 1.23691 0.74283 1.06911 1.03686 1.86122 1.25145 1.24384 1.86474 1.19057 0.89401 0.87067 0.92361 1.21501 1.02953 0.88320 1.06439 1.21182 0.89636 1.01588 0.91489 1.20960 0.94128 0.81309 1.20619 1.43842 1.00948 1.03631 0.96644 1.94430 1.64771 1.25723 1.51760 1.94624 0.96780 1.94368 1.57385 1.21097 1.02957 0.89343 0.95017 1.16818 0.88198 0.86417 1.07244 1.43238 1.14950 1.11755 1.59429 1.21394 0.81181 0.91736 0.75090 1.90707 1.69498 1.34954 1.48399 1.21537 0.94674 0.93822 1.05686 1.21523 0.93259 0.91420 0.99117 1.60663 1.18871 1.23330 1.28078 1.18942 0.83969 0.95163 0.91524 0.98658 1.22200 1.02514 0.97611 0.98897 1.21449 1.04975 0.96122 1.32557 0.91907 1.25824 0.97576 0.99620 0.96393 1.70099 1.17316 1.27453 1.42024 0.85451 0.78479 0.79746 0.77381 1.20009 1.18886 1.21434 0.89814 0.90445 0.85641 0.78012 0.80098 0.82859 0.72230 0.85447 0.85186 0.96852 0.93850 0.84413 0.95923 0.93567 0.93398 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.29 9.94 -93.30 -0.93 -3.21 16 3 C 0.17 1.98 6.70 22.60 0.15 2.13 16 4 C -0.17 -1.25 9.04 22.35 0.20 -1.05 16 5 C -0.02 -0.25 9.55 22.28 0.21 -0.04 16 6 C -0.09 -1.98 6.85 36.37 0.25 -1.73 16 7 N 0.04 1.09 4.45 -46.45 -0.21 0.89 16 8 O -0.14 -3.89 18.44 18.90 0.35 -3.54 16 9 O -0.23 -8.38 18.44 18.88 0.35 -8.03 16 10 C -0.06 -1.60 8.29 22.38 0.19 -1.41 16 11 C 0.11 2.11 6.45 38.18 0.25 2.35 16 12 N -0.65 -11.41 5.27 -303.13 -1.60 -13.00 16 13 C 0.52 13.10 7.72 87.66 0.68 13.77 16 14 O -0.56 -19.85 12.97 -3.05 -0.04 -19.89 16 15 C -0.12 -2.71 5.96 29.85 0.18 -2.54 16 16 C 0.08 2.80 4.77 86.30 0.41 3.21 16 17 N -0.68 -27.73 6.23 -495.45 -3.09 -30.82 16 18 C 0.21 11.04 2.46 44.17 0.11 11.15 16 19 H 0.00 -0.28 7.80 -2.39 -0.02 -0.29 16 20 C -0.15 -7.49 9.00 71.98 0.65 -6.84 16 21 C -0.51 -28.59 8.79 25.60 0.23 -28.37 16 22 H 0.06 3.43 7.82 -2.91 -0.02 3.41 16 23 C 0.00 0.21 5.23 84.66 0.44 0.65 16 24 N -0.93 -55.70 11.88 21.45 0.25 -55.45 16 25 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 29 H 0.08 -0.37 7.66 -2.39 -0.02 -0.39 16 30 H 0.08 -0.24 7.66 -2.38 -0.02 -0.25 16 31 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.20 -0.42 6.30 -2.91 -0.02 -0.44 16 33 H 0.18 1.43 7.60 -2.91 -0.02 1.41 16 34 H 0.15 5.10 5.16 -2.91 -0.02 5.09 16 35 H 0.44 4.47 8.39 -92.71 -0.78 3.70 16 36 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.01 0.52 7.43 -2.38 -0.02 0.50 16 39 H 0.04 1.82 8.01 -2.39 -0.02 1.80 16 40 H 0.34 12.09 8.45 -89.69 -0.76 11.33 16 41 H 0.02 1.01 7.50 -2.39 -0.02 0.99 16 42 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 43 H 0.05 2.62 6.57 -2.39 -0.02 2.61 16 44 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -81.27 376.29 1.70 -79.57 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.47 Total: 14.84 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.05 Total: -7.60 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -4.64 Total: -98.39 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.27 Total: -34.68 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -81.27 1.70 -79.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460313114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.781 kcal (2) G-P(sol) polarization free energy of solvation -81.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds