Wall clock time and date at job start Tue Mar 31 2020 19:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47116 * 2 1 4 4 O 1.42895 * 109.47414 * 180.02562 * 3 2 1 5 5 C 1.35512 * 117.00072 * 180.02562 * 4 3 2 6 6 C 1.39422 * 120.50987 * 179.97438 * 5 4 3 7 7 C 1.38197 * 118.34762 * 179.97438 * 6 5 4 8 8 N 1.32516 * 119.17428 * 0.02562 * 7 6 5 9 9 C 1.31758 * 120.97412 * 359.97438 * 8 7 6 10 10 C 1.50692 * 119.09820 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46985 * 90.00260 * 10 9 8 12 12 O 1.21297 * 120.00079 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00384 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99943 * 359.97438 * 13 11 10 15 15 H 1.08005 * 119.99956 * 17.01002 * 14 13 11 16 16 C 1.38947 * 120.00368 * 197.00785 * 14 13 11 17 17 N 1.31423 * 119.99833 * 21.25664 * 16 14 13 18 18 Si 1.86800 * 120.00411 * 201.25669 * 16 14 13 19 19 H 1.48496 * 109.46961 * 90.00337 * 18 16 14 20 20 H 1.48499 * 109.47122 * 210.00297 * 18 16 14 21 21 H 1.48497 * 109.47060 * 329.99895 * 18 16 14 22 22 C 1.46500 * 120.00254 * 179.97438 * 13 11 10 23 23 C 1.50699 * 109.47034 * 83.99387 * 22 13 11 24 24 O 1.20829 * 119.99947 * 359.97438 * 23 22 13 25 25 O 1.34229 * 120.00249 * 180.02562 * 23 22 13 26 26 C 1.45199 * 117.00416 * 179.97438 * 25 23 22 27 27 N 1.31802 * 121.80921 * 359.72001 * 9 8 7 28 28 H 1.08999 * 109.46845 * 60.00613 * 1 2 3 29 29 H 1.09000 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47311 * 300.00073 * 1 2 3 31 31 H 1.08991 * 109.47465 * 239.99739 * 2 1 3 32 32 H 1.08996 * 109.47221 * 119.99035 * 2 1 3 33 33 H 1.09002 * 109.46314 * 300.00036 * 3 2 1 34 34 H 1.09004 * 109.47153 * 59.99296 * 3 2 1 35 35 H 1.07991 * 120.82796 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.41097 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47836 * 209.99652 * 10 9 8 38 38 H 1.09003 * 109.47689 * 330.00774 * 10 9 8 39 39 H 0.96997 * 119.99892 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47277 * 203.99086 * 22 13 11 41 41 H 1.09000 * 109.47381 * 323.99332 * 22 13 11 42 42 H 1.09001 * 109.46849 * 299.99873 * 26 25 23 43 43 H 1.09003 * 109.46945 * 59.99182 * 26 25 23 44 44 H 1.08994 * 109.47586 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4427 -0.0006 5 6 4.0841 2.6501 -0.0001 6 6 5.4757 2.7355 -0.0001 7 6 6.0562 3.9897 -0.0002 8 7 5.2774 5.0619 0.0003 9 6 3.9649 4.9467 0.0003 10 6 3.1198 6.1943 0.0014 11 6 2.8379 6.6113 -1.4191 12 8 3.2795 5.9592 -2.3416 13 7 2.0951 7.7088 -1.6645 14 6 1.5956 8.4456 -0.6219 15 1 2.0064 8.3257 0.3698 16 6 0.5608 9.3467 -0.8408 17 7 -0.2137 9.2145 -1.8943 18 14 0.2704 10.7460 0.3621 19 1 1.0594 11.9317 -0.0582 20 1 -1.1734 11.0928 0.3789 21 1 0.6943 10.3258 1.7219 22 6 1.8216 8.1145 -3.0454 23 6 0.6363 7.3455 -3.5694 24 8 0.0776 6.5408 -2.8621 25 8 0.2017 7.5538 -4.8222 26 6 -0.9446 6.7774 -5.2600 27 7 3.3708 3.7702 -0.0057 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9565 0.8900 35 1 6.0849 1.8438 -0.0009 36 1 7.1310 4.0946 0.0002 37 1 2.1791 5.9956 0.5150 38 1 3.6528 6.9939 0.5157 39 1 -0.9363 9.8433 -2.0470 40 1 1.6035 9.1821 -3.0740 41 1 2.6934 7.9050 -3.6651 42 1 -0.7062 5.7152 -5.2055 43 1 -1.7966 6.9921 -4.6149 44 1 -1.1917 7.0424 -6.2880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465342422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:30 Heat of formation + Delta-G solvation = -101.159388 kcal Electronic energy + Delta-G solvation = -29783.856397 eV Core-core repulsion = 25509.871489 eV Total energy + Delta-G solvation = -4273.984907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.99011 -39.45483 -38.66337 -38.08117 -35.44279 -34.61144 -34.18055 -33.12602 -32.05376 -31.60913 -29.44608 -27.90933 -26.72912 -26.13811 -24.72526 -23.64284 -22.78400 -21.54750 -20.36266 -19.28436 -18.37048 -17.55336 -16.94753 -16.58887 -16.49596 -16.25871 -15.46516 -15.29366 -15.22063 -14.75713 -14.71470 -14.57943 -14.32385 -14.01800 -13.72598 -13.47295 -12.85812 -12.67140 -12.65321 -12.49452 -12.35462 -12.23206 -11.71285 -11.58298 -11.35591 -11.32330 -11.21212 -11.10749 -10.81472 -10.78467 -10.61615 -10.47504 -10.36956 -10.02834 -9.80816 -9.59124 -9.08664 -9.02847 -8.93293 -8.57854 -7.99394 -6.53515 -4.02967 1.18417 1.44794 2.92771 3.07183 3.18205 3.20640 3.46346 3.69960 3.87990 4.03467 4.08170 4.19948 4.39952 4.76073 4.78633 4.82863 4.97121 4.97518 5.22200 5.25445 5.42564 5.47964 5.53599 5.60488 5.63513 5.70239 5.78370 5.83786 5.95008 5.96370 6.01602 6.04312 6.14769 6.19106 6.23560 6.43397 6.54431 6.64899 7.10391 7.29781 7.37041 7.45135 7.56722 8.19100 8.42949 8.94016 9.10978 9.30778 9.71936 10.53949 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003805 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.611238 B = 7357.091565 C = 8380.831666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.065 3.935 4 O -0.305 6.305 5 C 0.364 3.636 6 C -0.262 4.262 7 C 0.174 3.826 8 N -0.532 5.532 9 C 0.400 3.600 10 C -0.059 4.059 11 C 0.485 3.515 12 O -0.597 6.597 13 N -0.427 5.427 14 C -0.339 4.339 15 H 0.106 0.894 16 C 0.039 3.961 17 N -0.867 5.867 18 Si 0.927 3.073 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.268 1.268 22 C 0.159 3.841 23 C 0.484 3.516 24 O -0.497 6.497 25 O -0.376 6.376 26 C 0.044 3.956 27 N -0.560 5.560 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.171 0.829 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.273 0.727 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -9.227 2.417 10.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.010 4.010 4 O -0.210 6.210 5 C 0.176 3.824 6 C -0.285 4.285 7 C 0.011 3.989 8 N -0.250 5.250 9 C 0.132 3.868 10 C -0.101 4.101 11 C 0.274 3.726 12 O -0.483 6.483 13 N -0.146 5.146 14 C -0.466 4.466 15 H 0.124 0.876 16 C -0.166 4.166 17 N -0.504 5.504 18 Si 0.753 3.247 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.193 1.193 22 C 0.033 3.967 23 C 0.325 3.675 24 O -0.382 6.382 25 O -0.294 6.294 26 C -0.051 4.051 27 N -0.289 5.289 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.189 0.811 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.339 -9.232 2.089 10.037 hybrid contribution -0.400 -0.090 0.520 0.662 sum 2.939 -9.322 2.609 10.116 Atomic orbital electron populations 1.21678 0.94067 1.02199 1.02756 1.21510 0.96344 0.94884 1.03209 1.22815 0.76753 0.97994 1.03411 1.86152 1.23388 1.24442 1.87043 1.20044 0.89496 0.84902 0.87947 1.21817 0.92727 1.01043 1.12896 1.22998 1.00518 0.86654 0.88769 1.68251 1.05952 1.33681 1.17159 1.22397 0.87493 0.91254 0.85613 1.20282 0.99583 0.91748 0.98440 1.19573 0.83098 0.80662 0.89314 1.90570 1.57394 1.54270 1.46032 1.43313 1.44328 1.22410 1.04531 1.19670 1.17390 1.18984 0.90577 0.87611 1.25229 0.94081 0.99448 0.97864 1.69859 1.16045 1.35240 1.29279 0.85930 0.77506 0.80942 0.80319 1.20104 1.21059 1.19289 1.20456 0.92130 1.00244 0.83863 1.23955 0.85172 0.80283 0.78098 1.90518 1.56321 1.34553 1.56793 1.86454 1.46338 1.63175 1.33431 1.22924 0.87743 0.95200 0.99185 1.67940 1.41635 0.98760 1.20612 0.92050 0.91901 0.92207 0.91047 0.91139 0.90954 0.91264 0.83539 0.81150 0.86814 0.86936 0.91644 0.85876 0.90019 0.93226 0.92600 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.30 6.30 -26.73 -0.17 -1.47 16 3 C 0.07 0.93 5.34 37.16 0.20 1.12 16 4 O -0.31 -4.75 10.13 -18.23 -0.18 -4.94 16 5 C 0.36 6.26 7.53 -16.69 -0.13 6.13 16 6 C -0.26 -3.74 10.13 -39.16 -0.40 -4.13 16 7 C 0.17 2.52 11.29 -17.27 -0.20 2.32 16 8 N -0.53 -9.81 10.33 -10.79 -0.11 -9.92 16 9 C 0.40 8.07 6.14 -157.22 -0.96 7.10 16 10 C -0.06 -1.23 4.59 -29.04 -0.13 -1.36 16 11 C 0.49 11.99 7.41 -10.99 -0.08 11.91 16 12 O -0.60 -16.23 15.72 5.54 0.09 -16.15 16 13 N -0.43 -10.66 2.18 -116.09 -0.25 -10.92 16 14 C -0.34 -8.26 9.14 -14.93 -0.14 -8.40 16 15 H 0.11 2.38 6.56 -52.48 -0.34 2.03 16 16 C 0.04 0.94 4.88 -17.46 -0.09 0.86 16 17 N -0.87 -22.08 9.27 55.50 0.51 -21.56 16 18 Si 0.93 18.75 29.60 -169.99 -5.03 13.72 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 C 0.16 3.83 5.14 -5.19 -0.03 3.80 16 23 C 0.48 12.15 6.13 36.00 0.22 12.37 16 24 O -0.50 -13.96 15.76 -18.75 -0.30 -14.26 16 25 O -0.38 -8.26 10.56 -39.25 -0.41 -8.68 16 26 C 0.04 0.78 10.56 101.05 1.07 1.85 16 27 N -0.56 -11.12 9.28 -10.78 -0.10 -11.22 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 34 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 35 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.11 2.33 8.10 -51.93 -0.42 1.91 16 38 H 0.11 2.09 7.69 -51.93 -0.40 1.69 16 39 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 40 H 0.12 2.91 6.39 -51.93 -0.33 2.58 16 41 H 0.08 1.86 7.61 -51.93 -0.40 1.47 16 42 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 43 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -33.53 380.75 -6.61 -40.13 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.10 Total: 6.99 kcal Atomic # 6 Polarization: 31.51 SS G_CDS: -0.46 Total: 31.05 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.05 Total: -53.62 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.81 Total: -44.02 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.53 -6.61 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465342422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.026 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds