Wall clock time and date at job start Tue Mar 31 2020 19:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47116 * 2 1 4 4 O 1.42895 * 109.47414 * 180.02562 * 3 2 1 5 5 C 1.35512 * 117.00072 * 180.02562 * 4 3 2 6 6 C 1.39422 * 120.50987 * 179.97438 * 5 4 3 7 7 C 1.38197 * 118.34762 * 179.97438 * 6 5 4 8 8 N 1.32516 * 119.17428 * 0.02562 * 7 6 5 9 9 C 1.31758 * 120.97412 * 359.97438 * 8 7 6 10 10 C 1.50692 * 119.09820 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46985 * 90.00260 * 10 9 8 12 12 O 1.21297 * 120.00079 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00384 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99943 * 359.97438 * 13 11 10 15 15 H 1.08005 * 119.99956 * 17.01002 * 14 13 11 16 16 C 1.38947 * 120.00368 * 197.00785 * 14 13 11 17 17 N 1.31423 * 119.99833 * 21.25664 * 16 14 13 18 18 Si 1.86800 * 120.00411 * 201.25669 * 16 14 13 19 19 H 1.48496 * 109.46961 * 90.00337 * 18 16 14 20 20 H 1.48499 * 109.47122 * 210.00297 * 18 16 14 21 21 H 1.48497 * 109.47060 * 329.99895 * 18 16 14 22 22 C 1.46500 * 120.00254 * 179.97438 * 13 11 10 23 23 C 1.50699 * 109.47034 * 83.99387 * 22 13 11 24 24 O 1.20829 * 119.99947 * 359.97438 * 23 22 13 25 25 O 1.34229 * 120.00249 * 180.02562 * 23 22 13 26 26 C 1.45199 * 117.00416 * 179.97438 * 25 23 22 27 27 N 1.31802 * 121.80921 * 359.72001 * 9 8 7 28 28 H 1.08999 * 109.46845 * 60.00613 * 1 2 3 29 29 H 1.09000 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47311 * 300.00073 * 1 2 3 31 31 H 1.08991 * 109.47465 * 239.99739 * 2 1 3 32 32 H 1.08996 * 109.47221 * 119.99035 * 2 1 3 33 33 H 1.09002 * 109.46314 * 300.00036 * 3 2 1 34 34 H 1.09004 * 109.47153 * 59.99296 * 3 2 1 35 35 H 1.07991 * 120.82796 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.41097 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47836 * 209.99652 * 10 9 8 38 38 H 1.09003 * 109.47689 * 330.00774 * 10 9 8 39 39 H 0.96997 * 119.99892 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47277 * 203.99086 * 22 13 11 41 41 H 1.09000 * 109.47381 * 323.99332 * 22 13 11 42 42 H 1.09001 * 109.46849 * 299.99873 * 26 25 23 43 43 H 1.09003 * 109.46945 * 59.99182 * 26 25 23 44 44 H 1.08994 * 109.47586 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4427 -0.0006 5 6 4.0841 2.6501 -0.0001 6 6 5.4757 2.7355 -0.0001 7 6 6.0562 3.9897 -0.0002 8 7 5.2774 5.0619 0.0003 9 6 3.9649 4.9467 0.0003 10 6 3.1198 6.1943 0.0014 11 6 2.8379 6.6113 -1.4191 12 8 3.2795 5.9592 -2.3416 13 7 2.0951 7.7088 -1.6645 14 6 1.5956 8.4456 -0.6219 15 1 2.0064 8.3257 0.3698 16 6 0.5608 9.3467 -0.8408 17 7 -0.2137 9.2145 -1.8943 18 14 0.2704 10.7460 0.3621 19 1 1.0594 11.9317 -0.0582 20 1 -1.1734 11.0928 0.3789 21 1 0.6943 10.3258 1.7219 22 6 1.8216 8.1145 -3.0454 23 6 0.6363 7.3455 -3.5694 24 8 0.0776 6.5408 -2.8621 25 8 0.2017 7.5538 -4.8222 26 6 -0.9446 6.7774 -5.2600 27 7 3.3708 3.7702 -0.0057 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9565 0.8900 35 1 6.0849 1.8438 -0.0009 36 1 7.1310 4.0946 0.0002 37 1 2.1791 5.9956 0.5150 38 1 3.6528 6.9939 0.5157 39 1 -0.9363 9.8433 -2.0470 40 1 1.6035 9.1821 -3.0740 41 1 2.6934 7.9050 -3.6651 42 1 -0.7062 5.7152 -5.2055 43 1 -1.7966 6.9921 -4.6149 44 1 -1.1917 7.0424 -6.2880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465342422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:29 Heat of formation + Delta-G solvation = -123.698864 kcal Electronic energy + Delta-G solvation = -29784.833782 eV Core-core repulsion = 25509.871489 eV Total energy + Delta-G solvation = -4274.962292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30822 -41.34133 -40.23191 -39.60154 -37.32688 -36.55407 -35.17220 -34.48409 -33.55052 -33.35185 -31.08034 -29.51676 -27.88690 -27.69593 -26.55997 -24.82845 -24.22159 -22.54325 -22.16292 -21.14993 -19.71017 -19.06618 -18.53779 -18.45441 -18.19144 -17.60031 -17.30102 -16.99685 -16.44140 -16.32105 -16.19068 -15.92660 -15.69138 -15.52164 -15.29961 -14.80141 -14.32398 -14.25358 -14.22140 -14.02578 -13.69746 -13.38897 -13.10904 -13.08609 -12.96562 -12.83966 -12.75358 -12.53886 -12.43001 -12.13901 -12.05157 -11.77741 -11.71662 -11.60408 -11.54301 -11.36141 -10.95365 -10.63714 -10.42907 -10.03844 -9.91808 -8.38859 -5.95086 -0.11303 0.18894 1.42437 1.52766 1.62984 1.67516 1.76215 1.76810 2.19174 2.33163 2.53073 2.83946 3.03878 3.11426 3.19501 3.76610 3.85345 3.94075 4.08324 4.18455 4.24703 4.26589 4.31193 4.31786 4.38283 4.40116 4.45117 4.47321 4.52483 4.61110 4.66451 4.67851 4.75859 4.76582 5.00408 5.09361 5.22418 5.32411 5.44493 5.59318 5.68674 5.83472 6.11186 6.30766 7.04915 7.09201 7.18164 7.41703 7.82814 8.68751 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003805 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.611238 B = 7357.091565 C = 8380.831666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.065 3.935 4 O -0.302 6.302 5 C 0.338 3.662 6 C -0.243 4.243 7 C 0.173 3.827 8 N -0.549 5.549 9 C 0.375 3.625 10 C -0.049 4.049 11 C 0.473 3.527 12 O -0.630 6.630 13 N -0.435 5.435 14 C -0.358 4.358 15 H 0.121 0.879 16 C -0.001 4.001 17 N -0.895 5.895 18 Si 0.998 3.002 19 H -0.267 1.267 20 H -0.292 1.292 21 H -0.257 1.257 22 C 0.155 3.845 23 C 0.485 3.515 24 O -0.536 6.536 25 O -0.377 6.377 26 C 0.039 3.961 27 N -0.590 5.590 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.188 0.812 36 H 0.222 0.778 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.273 0.727 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.132 -9.754 3.185 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.010 4.010 4 O -0.207 6.207 5 C 0.152 3.848 6 C -0.265 4.265 7 C 0.011 3.989 8 N -0.268 5.268 9 C 0.108 3.892 10 C -0.091 4.091 11 C 0.263 3.737 12 O -0.518 6.518 13 N -0.153 5.153 14 C -0.484 4.484 15 H 0.138 0.862 16 C -0.203 4.203 17 N -0.533 5.533 18 Si 0.821 3.179 19 H -0.193 1.193 20 H -0.218 1.218 21 H -0.181 1.181 22 C 0.030 3.970 23 C 0.328 3.672 24 O -0.424 6.424 25 O -0.294 6.294 26 C -0.055 4.055 27 N -0.320 5.320 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.206 0.794 36 H 0.238 0.762 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.498 -9.760 2.846 11.117 hybrid contribution -0.765 -0.005 0.178 0.786 sum 3.733 -9.765 3.024 10.883 Atomic orbital electron populations 1.21698 0.93252 1.03508 1.02131 1.21515 0.96893 0.92344 1.04260 1.22897 0.76330 1.00166 1.01583 1.86166 1.23819 1.23720 1.87019 1.20558 0.90910 0.84648 0.88724 1.22315 0.91610 1.02653 1.09960 1.23868 1.02336 0.85712 0.87021 1.68230 1.05351 1.35616 1.17586 1.22170 0.88315 0.90953 0.87803 1.20138 0.99935 0.93146 0.95837 1.20226 0.82664 0.80170 0.90674 1.90518 1.58722 1.55197 1.47402 1.43560 1.44114 1.22628 1.04963 1.20125 1.17894 1.19209 0.91172 0.86177 1.26132 0.93463 1.01171 0.99553 1.69966 1.16472 1.35862 1.31025 0.84851 0.76749 0.77730 0.78555 1.19252 1.21802 1.18114 1.20524 0.92201 1.00186 0.84119 1.24096 0.84988 0.79453 0.78629 1.90489 1.57639 1.36234 1.58036 1.86421 1.47665 1.63574 1.31745 1.23289 0.85827 0.94845 1.01538 1.67823 1.43027 0.99573 1.21555 0.93323 0.89561 0.92252 0.90492 0.89457 0.93968 0.91981 0.79441 0.76211 0.87445 0.85147 0.91736 0.85751 0.89404 0.93384 0.93503 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.91 71.98 0.71 -2.02 16 2 C -0.11 -2.31 6.30 30.60 0.19 -2.12 16 3 C 0.07 1.91 5.34 71.99 0.38 2.29 16 4 O -0.30 -9.30 10.13 -88.14 -0.89 -10.19 16 5 C 0.34 11.52 7.53 84.83 0.64 12.15 16 6 C -0.24 -6.34 10.13 22.55 0.23 -6.11 16 7 C 0.17 4.55 11.29 84.58 0.96 5.51 16 8 N -0.55 -19.80 10.33 -188.06 -1.94 -21.74 16 9 C 0.38 15.39 6.14 138.76 0.85 16.24 16 10 C -0.05 -2.11 4.59 29.10 0.13 -1.98 16 11 C 0.47 24.12 7.41 87.66 0.65 24.77 16 12 O -0.63 -35.48 15.72 -3.08 -0.05 -35.53 16 13 N -0.43 -22.27 2.18 -639.60 -1.39 -23.67 16 14 C -0.36 -17.60 9.14 84.04 0.77 -16.83 16 15 H 0.12 5.40 6.56 -2.91 -0.02 5.38 16 16 C 0.00 -0.04 4.88 84.92 0.41 0.37 16 17 N -0.90 -46.22 9.27 21.66 0.20 -46.02 16 18 Si 1.00 38.13 29.60 68.60 2.03 40.16 16 19 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 20 H -0.29 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 22 C 0.16 7.71 5.14 85.63 0.44 8.15 16 23 C 0.49 25.05 6.13 71.24 0.44 25.49 16 24 O -0.54 -31.20 15.76 21.95 0.35 -30.86 16 25 O -0.38 -16.67 10.56 -51.41 -0.54 -17.21 16 26 C 0.04 1.35 10.56 113.37 1.20 2.54 16 27 N -0.59 -24.01 9.28 -300.70 -2.79 -26.80 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 34 H 0.06 1.86 8.12 -2.38 -0.02 1.84 16 35 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.22 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.11 4.61 8.10 -2.39 -0.02 4.59 16 38 H 0.13 4.90 7.69 -2.39 -0.02 4.88 16 39 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 40 H 0.12 6.05 6.39 -2.39 -0.02 6.03 16 41 H 0.09 4.15 7.61 -2.39 -0.02 4.13 16 42 H 0.05 1.68 8.13 -2.39 -0.02 1.67 16 43 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 44 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -75.44 380.75 3.99 -71.45 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 1.02 Total: 31.96 kcal Atomic # 6 Polarization: 60.45 SS G_CDS: 8.00 Total: 68.45 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -5.93 Total: -118.22 kcal Atomic # 8 Polarization: -92.66 SS G_CDS: -1.14 Total: -93.80 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -75.44 3.99 -71.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465342422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.249 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds