Wall clock time and date at job start Tue Mar 31 2020 21:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47306 * 2 1 4 4 C 1.50699 * 109.47076 * 240.00274 * 2 1 3 5 5 N 1.30116 * 124.95238 * 284.69704 * 4 2 1 6 6 C 1.35784 * 109.64125 * 180.26799 * 5 4 2 7 7 C 1.39748 * 133.59559 * 180.02562 * 6 5 4 8 8 C 1.36600 * 119.88095 * 180.02562 * 7 6 5 9 9 C 1.38773 * 120.67360 * 359.96356 * 8 7 6 10 10 C 1.37857 * 120.45157 * 0.02562 * 9 8 7 11 11 C 1.38831 * 119.68864 * 359.97438 * 10 9 8 12 12 N 1.36045 * 124.95122 * 105.00262 * 4 2 1 13 13 C 1.46495 * 126.34434 * 359.70810 * 12 4 2 14 14 F 1.39905 * 109.47361 * 210.00062 * 13 12 4 15 15 F 1.39896 * 109.47840 * 330.00401 * 13 12 4 16 16 N 1.46899 * 109.46975 * 120.00589 * 2 1 3 17 17 C 1.47479 * 110.99975 * 199.02740 * 16 2 1 18 18 C 1.53513 * 87.93442 * 138.70148 * 17 16 2 19 19 O 1.42905 * 114.34187 * 87.63489 * 18 17 16 20 20 C 1.50693 * 114.17340 * 220.32880 * 18 17 16 21 21 H 1.08001 * 120.00293 * 93.83939 * 20 18 17 22 22 C 1.37877 * 120.00087 * 273.84147 * 20 18 17 23 23 N 1.31512 * 120.00194 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99927 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47298 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46972 * 120.00108 * 24 22 20 27 27 H 1.48507 * 109.46724 * 239.99912 * 24 22 20 28 28 C 1.47476 * 110.99959 * 294.99709 * 16 2 1 29 29 H 1.09006 * 109.46764 * 59.99581 * 1 2 3 30 30 H 1.09000 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46883 * 299.99643 * 1 2 3 32 32 H 1.07991 * 120.05745 * 359.97438 * 7 6 5 33 33 H 1.07999 * 119.65999 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.77600 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.15410 * 179.97438 * 10 9 8 36 36 H 1.09010 * 109.46854 * 90.00265 * 13 12 4 37 37 H 1.09005 * 113.47914 * 253.47095 * 17 16 2 38 38 H 1.09000 * 113.47730 * 23.93532 * 17 16 2 39 39 H 0.96697 * 113.99901 * 86.07745 * 19 18 17 40 40 H 0.97002 * 119.99989 * 180.02562 * 23 22 20 41 41 H 1.09000 * 113.47580 * 336.06222 * 28 16 2 42 42 H 1.09001 * 113.47648 * 106.52810 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 2.0257 -2.0002 -1.4015 6 6 2.5535 -2.3024 -2.6156 7 6 2.7817 -3.5017 -3.2956 8 6 3.3448 -3.4818 -4.5400 9 6 3.6938 -2.2802 -5.1401 10 6 3.4777 -1.0850 -4.4881 11 6 2.9064 -1.0854 -3.2228 12 7 2.5643 -0.0968 -2.3220 13 6 2.7409 1.3456 -2.5073 14 9 2.6501 1.6556 -3.8686 15 9 1.7439 2.0316 -1.8054 16 7 2.0197 -0.6926 1.1994 17 6 3.4230 -0.3361 1.4797 18 6 3.0496 -0.2647 2.9670 19 8 3.1490 -1.5106 3.6598 20 6 3.6877 0.8813 3.7090 21 1 3.1575 1.8159 3.8182 22 6 4.9482 0.7367 4.2485 23 7 5.5941 -0.4012 4.1150 24 14 5.7388 2.1570 5.1689 25 1 4.8127 3.3177 5.1781 26 1 6.0275 1.7424 6.5653 27 1 7.0052 2.5401 4.4944 28 6 1.6473 0.0418 2.4228 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5142 -4.4424 -2.8378 33 1 3.5200 -4.4108 -5.0622 34 1 4.1377 -2.2814 -6.1247 35 1 3.7515 -0.1527 -4.9594 36 1 3.7199 1.6430 -2.1314 37 1 4.1285 -1.1338 1.2469 38 1 3.7190 0.6251 1.0596 39 1 4.0333 -1.7012 4.0014 40 1 6.4808 -0.5030 4.4949 41 1 1.4695 1.1040 2.2545 42 1 0.8477 -0.4355 2.9894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:00 Heat of formation + Delta-G solvation = -16.427278 kcal Electronic energy + Delta-G solvation = -30102.100717 eV Core-core repulsion = 25720.702554 eV Total energy + Delta-G solvation = -4381.398163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.63245 -47.75189 -42.18805 -39.40816 -37.44149 -34.80388 -33.83589 -32.23823 -31.92982 -30.46117 -28.88787 -27.14485 -26.26062 -25.38459 -24.24065 -23.25977 -22.23643 -21.49612 -20.11191 -18.79645 -18.49608 -18.24285 -17.83100 -17.26060 -16.81329 -15.66752 -15.47202 -15.18555 -15.16687 -14.98651 -14.51901 -14.30814 -14.24316 -14.04329 -13.86751 -13.78420 -13.65242 -13.06066 -12.76275 -12.33027 -12.14319 -12.01500 -11.89369 -11.65492 -11.51543 -11.44617 -11.41091 -11.10018 -10.87166 -10.72635 -10.63338 -10.38410 -10.05741 -9.84909 -9.32498 -8.70122 -8.48997 -8.24224 -8.15154 -7.95621 -6.31788 -4.42330 0.87408 1.37194 1.83092 2.70818 3.14207 3.23419 3.23770 3.26894 3.79488 3.82939 4.06431 4.10712 4.19954 4.23551 4.68988 4.84981 4.88591 4.94710 5.20020 5.26167 5.32079 5.36074 5.45100 5.60646 5.67899 5.85186 5.93829 5.99842 6.03687 6.19510 6.22128 6.28578 6.38888 6.42462 6.44504 6.64734 6.72890 6.84818 6.96439 7.07660 7.28224 7.71428 7.79674 7.93696 7.98933 8.60662 9.28415 9.66429 10.74141 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.003634 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.176502 B = 7702.114730 C = 8040.528939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.113 3.887 3 H 0.068 0.932 4 C 0.325 3.675 5 N -0.448 5.448 6 C 0.055 3.945 7 C -0.062 4.062 8 C -0.127 4.127 9 C -0.106 4.106 10 C -0.107 4.107 11 C 0.048 3.952 12 N -0.550 5.550 13 C 0.489 3.511 14 F -0.182 7.182 15 F -0.175 7.175 16 N -0.445 5.445 17 C -0.022 4.022 18 C 0.252 3.748 19 O -0.567 6.567 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.903 3.097 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.282 1.282 28 C 0.006 3.994 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.153 0.847 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.390 0.610 40 H 0.271 0.729 41 H 0.066 0.934 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 1.715 -16.860 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.002 3.998 3 H 0.086 0.914 4 C 0.060 3.940 5 N -0.164 5.164 6 C -0.062 4.062 7 C -0.082 4.082 8 C -0.147 4.147 9 C -0.126 4.126 10 C -0.128 4.128 11 C -0.057 4.057 12 N -0.254 5.254 13 C 0.353 3.647 14 F -0.163 7.163 15 F -0.156 7.156 16 N -0.168 5.168 17 C -0.152 4.152 18 C 0.210 3.790 19 O -0.379 6.379 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.730 3.270 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.208 1.208 28 C -0.122 4.122 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.246 0.754 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.615 0.423 -16.569 17.205 hybrid contribution 1.580 2.438 -0.225 2.914 sum -3.036 2.861 -16.794 17.304 Atomic orbital electron populations 1.21747 0.92083 1.03549 1.01938 1.20994 0.96877 0.94530 0.87395 0.91397 1.23711 0.93668 0.88082 0.88575 1.70598 1.20129 1.10666 1.15025 1.19266 1.01931 0.92894 0.92141 1.20071 0.98363 0.95773 0.93945 1.20655 1.00630 0.98251 0.95199 1.20865 1.00450 0.91419 0.99817 1.20053 1.01804 0.99303 0.91594 1.18755 1.04948 0.88322 0.93710 1.46694 1.55694 1.05495 1.17469 1.21513 0.91732 0.76745 0.74685 1.93086 1.97158 1.92227 1.33846 1.93105 1.65374 1.78874 1.78256 1.69155 1.07022 1.42315 0.98319 1.24745 0.89770 0.98294 1.02362 1.19291 0.89087 0.83975 0.86691 1.86049 1.38646 1.38264 1.74949 1.21614 1.01136 0.98929 1.35724 0.91396 1.25070 0.96662 0.96325 0.95032 1.69312 1.14267 1.24625 1.45463 0.86358 0.79057 0.81943 0.79601 1.19525 1.20562 1.20810 1.24103 1.01024 0.96207 0.90890 0.92749 0.90818 0.90992 0.85034 0.85294 0.85259 0.85783 0.83053 0.91199 0.92888 0.75401 0.91810 0.91604 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.16 37.16 0.34 -1.69 16 2 C 0.11 1.95 1.48 -68.86 -0.10 1.85 16 3 H 0.07 1.11 5.50 -51.93 -0.29 0.83 16 4 C 0.32 5.71 6.34 -154.81 -0.98 4.73 16 5 N -0.45 -8.61 11.24 -8.23 -0.09 -8.70 16 6 C 0.05 0.92 7.23 -84.70 -0.61 0.31 16 7 C -0.06 -0.85 10.05 -39.61 -0.40 -1.25 16 8 C -0.13 -1.37 9.96 -39.98 -0.40 -1.76 16 9 C -0.11 -1.09 10.03 -39.52 -0.40 -1.49 16 10 C -0.11 -1.29 9.61 -39.50 -0.38 -1.67 16 11 C 0.05 0.73 6.69 -83.99 -0.56 0.17 16 12 N -0.55 -8.28 3.19 -116.88 -0.37 -8.65 16 13 C 0.49 5.68 6.34 59.84 0.38 6.06 16 14 F -0.18 -2.03 15.78 2.25 0.04 -1.99 16 15 F -0.17 -2.16 14.74 2.25 0.03 -2.12 16 16 N -0.44 -9.28 6.09 -238.00 -1.45 -10.73 16 17 C -0.02 -0.51 6.87 -7.55 -0.05 -0.56 16 18 C 0.25 6.25 1.57 -91.24 -0.14 6.11 16 19 O -0.57 -15.37 13.54 -35.23 -0.48 -15.85 16 20 C -0.54 -13.85 8.68 -34.44 -0.30 -14.15 16 21 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 22 C 0.07 1.83 5.39 -17.82 -0.10 1.74 16 23 N -0.90 -23.72 11.02 55.43 0.61 -23.11 16 24 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.01 0.13 5.98 -7.56 -0.05 0.09 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.00 7.34 -51.93 -0.38 0.62 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.27 7.13 -52.49 -0.37 0.89 16 36 H 0.15 1.31 8.14 -51.92 -0.42 0.88 16 37 H 0.07 1.76 8.14 -51.93 -0.42 1.33 16 38 H 0.05 1.15 7.58 -51.93 -0.39 0.76 16 39 H 0.39 10.78 6.33 45.56 0.29 11.06 16 40 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.07 1.26 7.79 -51.93 -0.40 0.86 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -30.34 354.52 -9.62 -39.96 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -4.48 Total: 12.57 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -3.75 Total: -1.53 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -1.31 Total: -51.19 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.48 Total: -15.85 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.34 -9.62 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.530 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds