Wall clock time and date at job start Tue Mar 31 2020 21:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47306 * 2 1 4 4 C 1.50699 * 109.47076 * 240.00274 * 2 1 3 5 5 N 1.30116 * 124.95238 * 284.69704 * 4 2 1 6 6 C 1.35784 * 109.64125 * 180.26799 * 5 4 2 7 7 C 1.39748 * 133.59559 * 180.02562 * 6 5 4 8 8 C 1.36600 * 119.88095 * 180.02562 * 7 6 5 9 9 C 1.38773 * 120.67360 * 359.96356 * 8 7 6 10 10 C 1.37857 * 120.45157 * 0.02562 * 9 8 7 11 11 C 1.38831 * 119.68864 * 359.97438 * 10 9 8 12 12 N 1.36045 * 124.95122 * 105.00262 * 4 2 1 13 13 C 1.46495 * 126.34434 * 359.70810 * 12 4 2 14 14 F 1.39905 * 109.47361 * 210.00062 * 13 12 4 15 15 F 1.39896 * 109.47840 * 330.00401 * 13 12 4 16 16 N 1.46899 * 109.46975 * 120.00589 * 2 1 3 17 17 C 1.47479 * 110.99975 * 199.02740 * 16 2 1 18 18 C 1.53513 * 87.93442 * 138.70148 * 17 16 2 19 19 O 1.42905 * 114.34187 * 87.63489 * 18 17 16 20 20 C 1.50693 * 114.17340 * 220.32880 * 18 17 16 21 21 H 1.08001 * 120.00293 * 93.83939 * 20 18 17 22 22 C 1.37877 * 120.00087 * 273.84147 * 20 18 17 23 23 N 1.31512 * 120.00194 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99927 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47298 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46972 * 120.00108 * 24 22 20 27 27 H 1.48507 * 109.46724 * 239.99912 * 24 22 20 28 28 C 1.47476 * 110.99959 * 294.99709 * 16 2 1 29 29 H 1.09006 * 109.46764 * 59.99581 * 1 2 3 30 30 H 1.09000 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46883 * 299.99643 * 1 2 3 32 32 H 1.07991 * 120.05745 * 359.97438 * 7 6 5 33 33 H 1.07999 * 119.65999 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.77600 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.15410 * 179.97438 * 10 9 8 36 36 H 1.09010 * 109.46854 * 90.00265 * 13 12 4 37 37 H 1.09005 * 113.47914 * 253.47095 * 17 16 2 38 38 H 1.09000 * 113.47730 * 23.93532 * 17 16 2 39 39 H 0.96697 * 113.99901 * 86.07745 * 19 18 17 40 40 H 0.97002 * 119.99989 * 180.02562 * 23 22 20 41 41 H 1.09000 * 113.47580 * 336.06222 * 28 16 2 42 42 H 1.09001 * 113.47648 * 106.52810 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 2.0257 -2.0002 -1.4015 6 6 2.5535 -2.3024 -2.6156 7 6 2.7817 -3.5017 -3.2956 8 6 3.3448 -3.4818 -4.5400 9 6 3.6938 -2.2802 -5.1401 10 6 3.4777 -1.0850 -4.4881 11 6 2.9064 -1.0854 -3.2228 12 7 2.5643 -0.0968 -2.3220 13 6 2.7409 1.3456 -2.5073 14 9 2.6501 1.6556 -3.8686 15 9 1.7439 2.0316 -1.8054 16 7 2.0197 -0.6926 1.1994 17 6 3.4230 -0.3361 1.4797 18 6 3.0496 -0.2647 2.9670 19 8 3.1490 -1.5106 3.6598 20 6 3.6877 0.8813 3.7090 21 1 3.1575 1.8159 3.8182 22 6 4.9482 0.7367 4.2485 23 7 5.5941 -0.4012 4.1150 24 14 5.7388 2.1570 5.1689 25 1 4.8127 3.3177 5.1781 26 1 6.0275 1.7424 6.5653 27 1 7.0052 2.5401 4.4944 28 6 1.6473 0.0418 2.4228 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5142 -4.4424 -2.8378 33 1 3.5200 -4.4108 -5.0622 34 1 4.1377 -2.2814 -6.1247 35 1 3.7515 -0.1527 -4.9594 36 1 3.7199 1.6430 -2.1314 37 1 4.1285 -1.1338 1.2469 38 1 3.7190 0.6251 1.0596 39 1 4.0333 -1.7012 4.0014 40 1 6.4808 -0.5030 4.4949 41 1 1.4695 1.1040 2.2545 42 1 0.8477 -0.4355 2.9894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:59 Heat of formation + Delta-G solvation = -38.243510 kcal Electronic energy + Delta-G solvation = -30103.046740 eV Core-core repulsion = 25720.702554 eV Total energy + Delta-G solvation = -4382.344186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.53824 -48.65532 -43.30174 -41.09064 -38.46227 -36.58798 -34.95539 -34.12472 -33.55803 -31.41677 -29.97453 -28.93902 -27.26425 -26.98117 -25.92738 -24.61372 -23.26178 -22.59772 -21.39112 -20.55727 -19.51671 -19.30467 -19.09894 -18.75191 -17.85332 -17.16031 -17.00136 -16.68874 -16.31900 -16.13855 -15.91284 -15.61852 -15.39905 -15.31793 -15.12493 -14.91725 -14.70350 -14.47261 -13.97755 -13.70102 -13.64412 -13.37554 -13.31176 -13.04976 -12.96794 -12.76132 -12.60326 -12.50677 -12.40676 -12.32995 -12.20728 -11.96165 -11.76004 -11.14922 -11.02881 -10.64595 -10.10027 -9.69849 -9.49080 -9.22211 -8.25365 -6.43853 -0.15917 0.40183 0.82797 1.41767 1.45662 1.56590 1.58072 2.34737 2.37302 2.79410 2.82789 2.89702 2.94395 3.01393 3.27461 3.39715 3.85806 3.86921 3.93570 4.01734 4.10360 4.18606 4.33012 4.36549 4.37765 4.44165 4.49484 4.68115 4.72948 4.80543 4.89897 5.03360 5.08176 5.11367 5.29674 5.36163 5.39708 5.46632 5.50236 5.68796 5.74762 5.89140 5.95460 6.21993 6.63766 6.77518 7.30108 7.55405 8.80221 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.003634 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.176502 B = 7702.114730 C = 8040.528939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.115 3.885 3 H 0.081 0.919 4 C 0.306 3.694 5 N -0.491 5.491 6 C 0.011 3.989 7 C -0.084 4.084 8 C -0.115 4.115 9 C -0.091 4.091 10 C -0.114 4.114 11 C 0.036 3.964 12 N -0.551 5.551 13 C 0.485 3.515 14 F -0.178 7.178 15 F -0.180 7.180 16 N -0.457 5.457 17 C -0.005 4.005 18 C 0.222 3.778 19 O -0.583 6.583 20 C -0.553 4.553 21 H 0.073 0.927 22 C 0.026 3.974 23 N -0.922 5.922 24 Si 0.970 3.030 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.278 1.278 28 C 0.020 3.980 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.145 0.855 36 H 0.185 0.815 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.383 0.617 40 H 0.274 0.726 41 H 0.089 0.911 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 3.270 -19.067 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.004 3.996 3 H 0.098 0.902 4 C 0.040 3.960 5 N -0.209 5.209 6 C -0.105 4.105 7 C -0.104 4.104 8 C -0.134 4.134 9 C -0.110 4.110 10 C -0.135 4.135 11 C -0.069 4.069 12 N -0.254 5.254 13 C 0.351 3.649 14 F -0.159 7.159 15 F -0.161 7.161 16 N -0.180 5.180 17 C -0.135 4.135 18 C 0.181 3.819 19 O -0.395 6.395 20 C -0.591 4.591 21 H 0.091 0.909 22 C -0.174 4.174 23 N -0.564 5.564 24 Si 0.794 3.206 25 H -0.186 1.186 26 H -0.207 1.207 27 H -0.204 1.204 28 C -0.108 4.108 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.149 0.851 33 H 0.183 0.817 34 H 0.189 0.811 35 H 0.163 0.837 36 H 0.202 0.798 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.237 0.763 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.187 1.996 -18.800 19.363 hybrid contribution 1.448 1.847 0.305 2.367 sum -2.739 3.843 -18.495 19.087 Atomic orbital electron populations 1.21705 0.90523 1.02985 1.03359 1.21027 0.98083 0.94569 0.85886 0.90151 1.23530 0.94961 0.88094 0.89416 1.70455 1.21427 1.12068 1.16942 1.19727 1.03770 0.94870 0.92147 1.20357 0.99647 0.95051 0.95328 1.21107 0.98319 1.00197 0.93820 1.21424 0.98289 0.90342 1.00960 1.20442 1.01431 1.01097 0.90504 1.19132 1.05409 0.87717 0.94688 1.46795 1.55065 1.06757 1.16779 1.22015 0.92742 0.75202 0.74937 1.93088 1.97188 1.91967 1.33646 1.93087 1.65863 1.78746 1.78391 1.69027 1.05566 1.43527 0.99886 1.24447 0.90432 0.97369 1.01271 1.19706 0.91887 0.83028 0.87293 1.86032 1.38196 1.39816 1.75473 1.21886 1.01631 0.99343 1.36258 0.90856 1.25856 0.97130 0.98645 0.95735 1.69405 1.14557 1.26294 1.46128 0.85331 0.78154 0.79088 0.77993 1.18624 1.20655 1.20411 1.23996 0.98778 0.97492 0.90578 0.91001 0.92370 0.89775 0.85072 0.81718 0.81095 0.83732 0.79845 0.94643 0.91963 0.76256 0.91659 0.89341 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.16 71.98 0.66 -3.10 16 2 C 0.12 3.96 1.48 44.17 0.07 4.03 16 3 H 0.08 2.55 5.50 -2.39 -0.01 2.53 16 4 C 0.31 10.90 6.34 137.92 0.87 11.78 16 5 N -0.49 -19.66 11.24 -179.95 -2.02 -21.68 16 6 C 0.01 0.39 7.23 39.45 0.29 0.67 16 7 C -0.08 -2.29 10.05 22.25 0.22 -2.07 16 8 C -0.11 -2.16 9.96 22.01 0.22 -1.94 16 9 C -0.09 -1.54 10.03 22.31 0.22 -1.32 16 10 C -0.11 -2.47 9.61 22.32 0.21 -2.26 16 11 C 0.04 1.07 6.69 38.86 0.26 1.33 16 12 N -0.55 -16.28 3.19 -523.69 -1.67 -17.95 16 13 C 0.48 10.46 6.34 127.77 0.81 11.27 16 14 F -0.18 -3.57 15.78 44.97 0.71 -2.86 16 15 F -0.18 -4.14 14.74 44.97 0.66 -3.47 16 16 N -0.46 -19.39 6.09 -907.28 -5.53 -24.92 16 17 C -0.01 -0.26 6.87 83.57 0.57 0.32 16 18 C 0.22 11.25 1.57 -11.20 -0.02 11.24 16 19 O -0.58 -32.86 13.54 -148.98 -2.02 -34.88 16 20 C -0.55 -28.65 8.68 25.60 0.22 -28.42 16 21 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 22 C 0.03 1.33 5.39 84.66 0.46 1.79 16 23 N -0.92 -49.80 11.02 21.45 0.24 -49.56 16 24 Si 0.97 40.42 29.54 68.60 2.03 42.44 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 28 C 0.02 0.84 5.98 83.57 0.50 1.34 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.23 7.34 -2.39 -0.02 2.21 16 32 H 0.13 3.37 8.06 -2.92 -0.02 3.35 16 33 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.14 2.47 7.13 -2.91 -0.02 2.45 16 36 H 0.19 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.03 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.06 2.74 7.58 -2.39 -0.02 2.72 16 39 H 0.38 22.14 6.33 -74.06 -0.47 21.67 16 40 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.09 3.27 7.79 -2.39 -0.02 3.25 16 42 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -68.45 354.52 -1.43 -69.88 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: 0.60 Total: 38.35 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.57 Total: 4.64 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -8.99 Total: -114.11 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -2.02 Total: -34.88 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 1.37 Total: -6.33 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -68.45 -1.43 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.641 kcal (2) G-P(sol) polarization free energy of solvation -68.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds