Wall clock time and date at job start Tue Mar 31 2020 21:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46991 * 2 1 4 4 C 1.50698 * 109.46922 * 239.99607 * 2 1 3 5 5 O 1.21286 * 120.00161 * 274.72193 * 4 2 1 6 6 N 1.34775 * 119.99862 * 94.72559 * 4 2 1 7 7 C 1.47427 * 125.65020 * 4.94355 * 6 4 2 8 8 C 1.54905 * 104.83318 * 204.09216 * 7 6 4 9 9 C 1.55160 * 101.58142 * 322.98827 * 8 7 6 10 10 H 1.08998 * 110.72045 * 277.13737 * 9 8 7 11 11 N 1.46903 * 110.72125 * 154.04349 * 9 8 7 12 12 C 1.46894 * 110.99957 * 86.45192 * 11 9 8 13 13 C 1.50702 * 109.47225 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99696 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00261 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00066 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00025 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00011 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46774 * 120.00427 * 20 18 16 23 23 H 1.48497 * 109.47059 * 240.00587 * 20 18 16 24 24 C 1.47022 * 125.64774 * 184.62876 * 6 4 2 25 25 C 1.53003 * 109.46925 * 120.00149 * 2 1 3 26 26 F 1.39899 * 109.47550 * 59.99871 * 25 2 1 27 27 F 1.39900 * 109.46959 * 180.02562 * 25 2 1 28 28 F 1.39903 * 109.46778 * 299.99693 * 25 2 1 29 29 H 1.09000 * 109.46775 * 295.12811 * 1 2 3 30 30 H 1.08998 * 109.47013 * 175.13156 * 1 2 3 31 31 H 1.08997 * 109.46732 * 55.13109 * 1 2 3 32 32 H 1.09002 * 110.35944 * 322.93010 * 7 6 4 33 33 H 1.08996 * 110.36804 * 85.14203 * 7 6 4 34 34 H 1.09002 * 111.00649 * 81.05729 * 8 7 6 35 35 H 1.09002 * 111.00602 * 204.91331 * 8 7 6 36 36 H 1.00898 * 110.99535 * 322.50019 * 11 9 8 37 37 H 1.09003 * 109.47423 * 299.99725 * 12 11 9 38 38 H 1.09000 * 109.47246 * 60.00245 * 12 11 9 39 39 H 0.96999 * 120.00032 * 359.97438 * 15 13 12 40 40 H 0.97002 * 120.00103 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.89071 * 298.39910 * 24 6 4 42 42 H 1.09010 * 109.88145 * 59.56330 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1529 -1.9173 -1.2271 6 7 2.3476 -0.0048 -2.3345 7 6 2.3474 1.4654 -2.4438 8 6 2.1556 1.7508 -3.9542 9 6 2.9849 0.6067 -4.5951 10 1 4.0418 0.8703 -4.6317 11 7 2.4831 0.2912 -5.9393 12 6 3.1013 1.1602 -6.9494 13 6 2.5629 0.8083 -8.3122 14 8 1.7450 -0.0795 -8.4304 15 7 2.9910 1.4794 -9.3998 16 6 2.5016 1.1588 -10.6397 17 1 1.7727 0.3689 -10.7449 18 6 2.9425 1.8510 -11.7609 19 7 3.8290 2.8126 -11.6329 20 14 2.2752 1.4148 -13.4503 21 1 1.2960 0.3054 -13.3243 22 1 1.6048 2.6017 -14.0392 23 1 3.3938 0.9907 -14.3300 24 6 2.7549 -0.5735 -3.6276 25 6 2.0400 -0.7213 1.2493 26 9 1.5737 -2.0403 1.2493 27 9 3.4390 -0.7208 1.2496 28 9 1.5737 -0.0617 2.3915 29 1 -0.3633 0.4364 0.9304 30 1 -0.3633 -1.0239 -0.0872 31 1 -0.3633 0.5875 -0.8432 32 1 1.5227 1.8882 -1.8700 33 1 3.2975 1.8717 -2.0969 34 1 1.1051 1.6768 -4.2355 35 1 2.5625 2.7258 -4.2223 36 1 1.4768 0.3557 -5.9739 37 1 2.8684 2.2012 -6.7249 38 1 4.1821 1.0191 -6.9378 39 1 3.6454 2.1891 -9.3053 40 1 4.1372 3.2956 -12.4157 41 1 3.6767 -1.1428 -3.5085 42 1 1.9657 -1.2187 -4.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480115380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:47 Heat of formation + Delta-G solvation = -219.405863 kcal Electronic energy + Delta-G solvation = -29168.166091 eV Core-core repulsion = 24347.196892 eV Total energy + Delta-G solvation = -4820.969200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.44606 -47.98464 -47.82668 -40.61592 -38.65100 -37.84325 -34.98848 -34.37397 -33.82156 -31.31035 -30.72659 -29.19610 -26.98777 -26.36727 -24.57879 -23.67491 -22.93258 -21.04248 -19.97460 -19.35404 -19.04549 -18.74022 -18.02258 -17.81380 -17.39142 -16.53096 -16.06015 -15.54894 -15.44852 -15.03324 -14.78507 -14.59326 -14.56156 -14.33134 -14.17656 -14.04917 -13.99011 -13.79010 -13.75794 -13.66916 -13.29798 -13.19971 -12.87113 -12.67734 -12.44157 -12.42364 -12.20059 -11.89497 -11.73034 -11.53807 -11.47922 -11.12348 -11.07265 -10.37600 -10.30830 -10.26729 -9.56898 -9.04804 -8.56775 -8.18372 -8.01521 -6.46613 -3.87485 1.88745 2.20493 2.56589 3.13225 3.24404 3.28285 3.31558 3.52360 3.59817 3.83650 3.91046 4.08088 4.14331 4.26630 4.32251 4.39013 4.47834 4.73351 4.91866 4.94965 5.00125 5.04091 5.08741 5.11429 5.21215 5.46257 5.46603 5.58067 5.64230 5.72768 5.80644 5.85405 5.90564 6.19396 6.99730 7.05474 7.47463 7.51203 7.62235 8.01292 8.55500 9.13122 9.48579 9.99550 10.71044 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.001804 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.503622 B =15513.316897 C =15655.311507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 H 0.131 0.869 4 C 0.535 3.465 5 O -0.514 6.514 6 N -0.611 5.611 7 C 0.096 3.904 8 C -0.168 4.168 9 C 0.080 3.920 10 H 0.097 0.903 11 N -0.657 5.657 12 C 0.052 3.948 13 C 0.439 3.561 14 O -0.583 6.583 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.115 3.885 25 C 0.470 3.530 26 F -0.164 7.164 27 F -0.180 7.180 28 F -0.180 7.180 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.354 0.646 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 2.711 25.612 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 H 0.149 0.851 4 C 0.321 3.679 5 O -0.389 6.389 6 N -0.346 5.346 7 C -0.028 4.028 8 C -0.208 4.208 9 C -0.032 4.032 10 H 0.115 0.885 11 N -0.289 5.289 12 C -0.080 4.080 13 C 0.224 3.776 14 O -0.467 6.467 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.007 4.007 25 C 0.415 3.585 26 F -0.145 7.145 27 F -0.161 7.161 28 F -0.161 7.161 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.515 0.974 25.338 25.481 hybrid contribution -0.113 1.282 -0.455 1.365 sum -2.628 2.256 24.883 25.123 Atomic orbital electron populations 1.21792 0.88637 1.05192 1.04802 1.22593 1.01858 1.02547 0.91175 0.85099 1.19327 0.78361 0.87137 0.83083 1.90840 1.52374 1.13288 1.82417 1.48368 1.66939 1.07679 1.11574 1.22425 1.02196 0.80115 0.98026 1.23616 1.02132 1.00925 0.94112 1.22616 0.99730 0.91979 0.88826 0.88506 1.59934 1.12580 1.55425 1.00959 1.21690 1.00105 0.94459 0.91764 1.19775 0.86518 0.85919 0.85369 1.90540 1.36685 1.33396 1.86081 1.41865 1.39228 1.32987 1.05843 1.19755 1.22735 1.17994 0.82382 0.87831 1.25273 0.96603 0.95944 1.00144 1.69615 1.30737 1.22573 1.31327 0.85794 0.78715 0.78474 0.81344 1.19187 1.20763 1.20705 1.21981 1.01679 0.96241 0.80790 1.19845 0.75674 0.78328 0.84668 1.93255 1.88120 1.36532 1.96584 1.93213 1.29710 1.96442 1.96729 1.93191 1.88497 1.80857 1.53588 0.89767 0.90123 0.89666 0.90373 0.90501 0.89941 0.89237 0.82537 0.93591 0.89383 0.77453 0.91886 0.90445 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.93 37.16 0.33 -0.50 16 2 C -0.16 -1.17 2.24 -91.77 -0.21 -1.38 16 3 H 0.13 0.57 6.76 -51.93 -0.35 0.22 16 4 C 0.54 5.81 6.58 -10.99 -0.07 5.73 16 5 O -0.51 -7.75 15.70 5.55 0.09 -7.66 16 6 N -0.61 -5.76 3.33 -170.51 -0.57 -6.33 16 7 C 0.10 0.58 6.33 -2.53 -0.02 0.56 16 8 C -0.17 -1.24 6.63 -24.58 -0.16 -1.40 16 9 C 0.08 0.81 3.22 -65.87 -0.21 0.60 16 10 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 11 N -0.66 -9.38 5.92 -106.05 -0.63 -10.00 16 12 C 0.05 0.82 6.02 -4.98 -0.03 0.79 16 13 C 0.44 9.86 7.82 -10.99 -0.09 9.78 16 14 O -0.58 -15.34 15.78 5.54 0.09 -15.25 16 15 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 16 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 20 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.12 1.28 6.64 -3.06 -0.02 1.26 16 25 C 0.47 4.42 2.57 37.16 0.10 4.52 16 26 F -0.16 -1.92 15.48 2.25 0.03 -1.88 16 27 F -0.18 -1.93 17.03 2.25 0.04 -1.89 16 28 F -0.18 -1.50 16.71 2.25 0.04 -1.46 16 29 H 0.08 0.35 7.67 -51.93 -0.40 -0.05 16 30 H 0.08 0.58 7.94 -51.93 -0.41 0.16 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.31 7.25 -51.93 -0.38 -0.07 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.35 5.25 8.00 -39.29 -0.31 4.94 16 37 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 39 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.07 8.03 -51.92 -0.42 0.65 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -33.44 364.84 -5.84 -39.28 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.45 Total: 8.95 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -0.62 Total: 12.15 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.53 Total: -53.37 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.17 Total: -22.92 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.44 -5.84 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480115380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.129 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds