Wall clock time and date at job start Tue Mar 31 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46991 * 2 1 4 4 C 1.50698 * 109.46922 * 239.99607 * 2 1 3 5 5 O 1.21286 * 120.00161 * 274.72193 * 4 2 1 6 6 N 1.34775 * 119.99862 * 94.72559 * 4 2 1 7 7 C 1.47427 * 125.65020 * 4.94355 * 6 4 2 8 8 C 1.54905 * 104.83318 * 204.09216 * 7 6 4 9 9 C 1.55160 * 101.58142 * 322.98827 * 8 7 6 10 10 H 1.08998 * 110.72045 * 277.13737 * 9 8 7 11 11 N 1.46903 * 110.72125 * 154.04349 * 9 8 7 12 12 C 1.46894 * 110.99957 * 86.45192 * 11 9 8 13 13 C 1.50702 * 109.47225 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99696 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00261 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00066 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00025 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00011 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46774 * 120.00427 * 20 18 16 23 23 H 1.48497 * 109.47059 * 240.00587 * 20 18 16 24 24 C 1.47022 * 125.64774 * 184.62876 * 6 4 2 25 25 C 1.53003 * 109.46925 * 120.00149 * 2 1 3 26 26 F 1.39899 * 109.47550 * 59.99871 * 25 2 1 27 27 F 1.39900 * 109.46959 * 180.02562 * 25 2 1 28 28 F 1.39903 * 109.46778 * 299.99693 * 25 2 1 29 29 H 1.09000 * 109.46775 * 295.12811 * 1 2 3 30 30 H 1.08998 * 109.47013 * 175.13156 * 1 2 3 31 31 H 1.08997 * 109.46732 * 55.13109 * 1 2 3 32 32 H 1.09002 * 110.35944 * 322.93010 * 7 6 4 33 33 H 1.08996 * 110.36804 * 85.14203 * 7 6 4 34 34 H 1.09002 * 111.00649 * 81.05729 * 8 7 6 35 35 H 1.09002 * 111.00602 * 204.91331 * 8 7 6 36 36 H 1.00898 * 110.99535 * 322.50019 * 11 9 8 37 37 H 1.09003 * 109.47423 * 299.99725 * 12 11 9 38 38 H 1.09000 * 109.47246 * 60.00245 * 12 11 9 39 39 H 0.96999 * 120.00032 * 359.97438 * 15 13 12 40 40 H 0.97002 * 120.00103 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.89071 * 298.39910 * 24 6 4 42 42 H 1.09010 * 109.88145 * 59.56330 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1529 -1.9173 -1.2271 6 7 2.3476 -0.0048 -2.3345 7 6 2.3474 1.4654 -2.4438 8 6 2.1556 1.7508 -3.9542 9 6 2.9849 0.6067 -4.5951 10 1 4.0418 0.8703 -4.6317 11 7 2.4831 0.2912 -5.9393 12 6 3.1013 1.1602 -6.9494 13 6 2.5629 0.8083 -8.3122 14 8 1.7450 -0.0795 -8.4304 15 7 2.9910 1.4794 -9.3998 16 6 2.5016 1.1588 -10.6397 17 1 1.7727 0.3689 -10.7449 18 6 2.9425 1.8510 -11.7609 19 7 3.8290 2.8126 -11.6329 20 14 2.2752 1.4148 -13.4503 21 1 1.2960 0.3054 -13.3243 22 1 1.6048 2.6017 -14.0392 23 1 3.3938 0.9907 -14.3300 24 6 2.7549 -0.5735 -3.6276 25 6 2.0400 -0.7213 1.2493 26 9 1.5737 -2.0403 1.2493 27 9 3.4390 -0.7208 1.2496 28 9 1.5737 -0.0617 2.3915 29 1 -0.3633 0.4364 0.9304 30 1 -0.3633 -1.0239 -0.0872 31 1 -0.3633 0.5875 -0.8432 32 1 1.5227 1.8882 -1.8700 33 1 3.2975 1.8717 -2.0969 34 1 1.1051 1.6768 -4.2355 35 1 2.5625 2.7258 -4.2223 36 1 1.4768 0.3557 -5.9739 37 1 2.8684 2.2012 -6.7249 38 1 4.1821 1.0191 -6.9378 39 1 3.6454 2.1891 -9.3053 40 1 4.1372 3.2956 -12.4157 41 1 3.6767 -1.1428 -3.5085 42 1 1.9657 -1.2187 -4.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480115380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:45 Heat of formation + Delta-G solvation = -244.728624 kcal Electronic energy + Delta-G solvation = -29169.264169 eV Core-core repulsion = 24347.196892 eV Total energy + Delta-G solvation = -4822.067277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.18952 -48.70930 -48.62199 -41.40874 -40.17343 -38.97330 -36.22776 -35.65553 -34.98522 -33.25771 -31.59324 -30.04657 -27.90926 -27.51539 -25.93281 -24.76486 -23.55702 -21.86127 -21.11910 -20.67641 -19.91677 -19.76837 -19.48122 -18.60467 -18.18316 -17.71205 -17.24982 -16.82401 -16.34938 -16.27343 -15.98654 -15.73313 -15.53565 -15.34497 -15.20493 -15.08084 -14.84722 -14.79613 -14.73681 -14.34310 -14.16806 -14.05984 -13.82496 -13.68045 -13.48910 -13.41353 -13.11368 -13.02739 -12.95454 -12.68164 -12.47384 -12.41647 -12.35591 -12.11407 -11.77350 -11.50631 -11.14942 -10.34911 -10.00248 -9.82880 -9.30387 -8.46353 -5.94469 1.13481 1.36942 1.42727 1.46440 1.56393 1.84714 2.06994 2.29774 2.60912 2.83610 2.92657 2.94182 3.21439 3.38944 3.45675 3.60993 3.77029 3.80272 3.87331 4.07824 4.24802 4.32496 4.37511 4.52371 4.55784 4.60148 4.61740 4.65539 4.79843 4.82356 4.99659 5.06123 5.09553 5.15865 5.42349 5.89863 6.10876 6.27350 6.36000 6.61396 6.83087 7.14164 7.58091 8.13769 8.71038 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.001804 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.503622 B =15513.316897 C =15655.311507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 H 0.171 0.829 4 C 0.528 3.472 5 O -0.569 6.569 6 N -0.608 5.608 7 C 0.092 3.908 8 C -0.159 4.159 9 C 0.084 3.916 10 H 0.111 0.889 11 N -0.678 5.678 12 C 0.070 3.930 13 C 0.435 3.565 14 O -0.627 6.627 15 N -0.573 5.573 16 C -0.332 4.332 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.990 3.010 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.272 1.272 24 C 0.116 3.884 25 C 0.463 3.537 26 F -0.183 7.183 27 F -0.190 7.190 28 F -0.172 7.172 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.348 0.652 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.398 0.602 40 H 0.277 0.723 41 H 0.064 0.936 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 5.385 26.598 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 H 0.188 0.812 4 C 0.315 3.685 5 O -0.448 6.448 6 N -0.340 5.340 7 C -0.029 4.029 8 C -0.199 4.199 9 C -0.027 4.027 10 H 0.129 0.871 11 N -0.310 5.310 12 C -0.062 4.062 13 C 0.223 3.777 14 O -0.513 6.513 15 N -0.210 5.210 16 C -0.462 4.462 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.814 3.186 21 H -0.200 1.200 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.007 4.007 25 C 0.409 3.591 26 F -0.164 7.164 27 F -0.171 7.171 28 F -0.153 7.153 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.168 0.832 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.232 0.768 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.359 3.709 26.345 26.709 hybrid contribution -0.152 0.411 -0.702 0.828 sum -2.511 4.119 25.643 26.093 Atomic orbital electron populations 1.21863 0.87208 1.04478 1.06742 1.22661 1.02800 1.03463 0.87980 0.81154 1.19966 0.77598 0.86738 0.84170 1.90814 1.54688 1.15806 1.83501 1.48439 1.65804 1.09329 1.10472 1.22750 1.04852 0.77660 0.97634 1.23564 1.01321 1.00427 0.94565 1.22612 1.00912 0.92673 0.86481 0.87056 1.59852 1.12246 1.56097 1.02804 1.21526 1.00592 0.96244 0.87831 1.20989 0.85079 0.84297 0.87316 1.90510 1.38492 1.35105 1.87227 1.41926 1.39720 1.33649 1.05730 1.19666 1.23616 1.18498 0.84397 0.90529 1.25996 0.96607 0.95610 1.03017 1.69663 1.31004 1.22805 1.32488 0.84906 0.78147 0.78239 0.77267 1.19982 1.19508 1.19756 1.21811 1.00135 0.96588 0.82187 1.20210 0.75238 0.77849 0.85827 1.93217 1.88290 1.38199 1.96733 1.93189 1.30667 1.96446 1.96843 1.93203 1.88310 1.80474 1.53332 0.87694 0.92271 0.87761 0.87119 0.88203 0.90432 0.87098 0.83234 0.90341 0.87553 0.76818 0.91309 0.91772 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.93 71.98 0.64 -0.65 16 2 C -0.15 -1.82 2.24 -11.54 -0.03 -1.85 16 3 H 0.17 0.70 6.76 -2.39 -0.02 0.68 16 4 C 0.53 10.98 6.58 87.66 0.58 11.55 16 5 O -0.57 -17.77 15.70 -3.05 -0.05 -17.82 16 6 N -0.61 -10.37 3.33 -811.77 -2.70 -13.07 16 7 C 0.09 0.73 6.33 86.85 0.55 1.28 16 8 C -0.16 -1.76 6.63 31.99 0.21 -1.54 16 9 C 0.08 1.53 3.22 46.11 0.15 1.68 16 10 H 0.11 1.74 7.89 -2.39 -0.02 1.73 16 11 N -0.68 -18.70 5.92 -489.42 -2.90 -21.60 16 12 C 0.07 2.08 6.02 85.56 0.52 2.60 16 13 C 0.44 19.65 7.82 87.66 0.69 20.33 16 14 O -0.63 -33.88 15.78 -3.08 -0.05 -33.93 16 15 N -0.57 -28.20 5.29 -306.99 -1.62 -29.83 16 16 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 17 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 18 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 19 N -0.92 -48.27 13.05 21.66 0.28 -47.99 16 20 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 C 0.12 2.54 6.64 86.73 0.58 3.12 16 25 C 0.46 8.20 2.57 71.98 0.18 8.39 16 26 F -0.18 -4.37 15.48 44.97 0.70 -3.68 16 27 F -0.19 -3.93 17.03 44.97 0.77 -3.16 16 28 F -0.17 -2.53 16.71 44.97 0.75 -1.78 16 29 H 0.10 0.53 7.67 -2.39 -0.02 0.51 16 30 H 0.06 0.81 7.94 -2.39 -0.02 0.79 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.23 7.25 -2.39 -0.02 0.21 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.98 7.82 -2.39 -0.02 0.96 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.35 10.24 8.00 -89.70 -0.72 9.52 16 37 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 38 H 0.11 2.82 8.08 -2.39 -0.02 2.80 16 39 H 0.40 18.34 7.90 -92.71 -0.73 17.61 16 40 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.53 8.03 -2.38 -0.02 1.51 16 Total: -1.00 -76.79 364.84 2.19 -74.60 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.36 Total: 26.89 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 5.35 Total: 27.05 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -6.94 Total: -112.49 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.10 Total: -51.75 kcal Atomic # 9 Polarization: -10.83 SS G_CDS: 2.21 Total: -8.62 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -76.79 2.19 -74.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480115380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.131 kcal (2) G-P(sol) polarization free energy of solvation -76.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds