Wall clock time and date at job start Tue Mar 31 2020 21:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47081 * 2 1 4 4 C 1.50705 * 109.47063 * 119.99529 * 2 1 3 5 5 O 1.21274 * 119.99871 * 85.25770 * 4 2 1 6 6 N 1.34775 * 119.99792 * 265.25423 * 4 2 1 7 7 C 1.47025 * 125.65134 * 4.70204 * 6 4 2 8 8 C 1.54338 * 107.26394 * 178.84632 * 7 6 4 9 9 C 1.55150 * 103.02267 * 338.13825 * 8 7 6 10 10 H 1.08997 * 111.01002 * 277.23450 * 9 8 7 11 11 N 1.46905 * 111.03729 * 153.39572 * 9 8 7 12 12 C 1.46896 * 110.99806 * 92.78416 * 11 9 8 13 13 C 1.50705 * 109.47047 * 179.97438 * 12 11 9 14 14 O 1.21289 * 119.99665 * 0.02562 * 13 12 11 15 15 N 1.34766 * 119.99980 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00020 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.38957 * 120.00110 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99863 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47255 * 89.99957 * 20 18 16 22 22 H 1.48498 * 109.47381 * 210.00249 * 20 18 16 23 23 H 1.48506 * 109.46932 * 330.00068 * 20 18 16 24 24 C 1.47427 * 125.64519 * 185.00701 * 6 4 2 25 25 C 1.52997 * 109.47533 * 239.99966 * 2 1 3 26 26 F 1.39897 * 109.47420 * 59.99622 * 25 2 1 27 27 F 1.39901 * 109.47401 * 180.02562 * 25 2 1 28 28 F 1.39904 * 109.46790 * 299.99908 * 25 2 1 29 29 H 1.09001 * 109.46928 * 178.24561 * 1 2 3 30 30 H 1.08997 * 109.47313 * 298.24397 * 1 2 3 31 31 H 1.09005 * 109.46999 * 58.24499 * 1 2 3 32 32 H 1.08998 * 109.88098 * 298.39033 * 7 6 4 33 33 H 1.08996 * 109.88158 * 59.55556 * 7 6 4 34 34 H 1.09000 * 110.84705 * 219.66930 * 8 7 6 35 35 H 1.09004 * 110.66631 * 96.52636 * 8 7 6 36 36 H 1.00902 * 110.99399 * 328.83425 * 11 9 8 37 37 H 1.09002 * 109.47516 * 300.00125 * 12 11 9 38 38 H 1.09000 * 109.46860 * 60.00453 * 12 11 9 39 39 H 0.97004 * 120.00133 * 0.02562 * 15 13 12 40 40 H 0.96996 * 119.99900 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.36719 * 322.92879 * 24 6 4 42 42 H 1.08998 * 110.36601 * 85.14711 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.1526 -1.9171 1.2275 6 7 2.3480 -0.0044 2.3344 7 6 2.1594 1.4432 2.5089 8 6 2.6337 1.7984 3.9339 9 6 2.5439 0.4415 4.6808 10 1 1.5276 0.2522 5.0264 11 7 3.4953 0.3909 5.7990 12 6 2.8627 0.8335 7.0487 13 6 3.8667 0.7676 8.1707 14 8 4.9980 0.3896 7.9506 15 7 3.5076 1.1286 9.4184 16 6 4.4211 1.0691 10.4390 17 1 5.4287 0.7334 10.2430 18 6 4.0509 1.4419 11.7254 19 7 2.8251 1.8510 11.9639 20 14 5.2958 1.3616 13.1158 21 1 6.0129 2.6583 13.2137 22 1 4.5926 1.0869 14.3946 23 1 6.2716 0.2755 12.8443 24 6 2.9454 -0.5550 3.5646 25 6 2.0401 -0.7212 -1.2492 26 9 1.5738 -0.0619 -2.3915 27 9 3.4391 -0.7217 -1.2489 28 9 1.5738 -2.0403 -1.2491 29 1 -0.3633 -1.0272 -0.0315 30 1 -0.3634 0.4863 0.9053 31 1 -0.3633 0.5409 -0.8739 32 1 2.7525 1.9857 1.7726 33 1 1.1050 1.6957 2.3974 34 1 1.9723 2.5346 4.3907 35 1 3.6610 2.1626 3.9179 36 1 4.3193 0.9373 5.5975 37 1 2.5114 1.8591 6.9349 38 1 2.0184 0.1836 7.2786 39 1 2.6027 1.4306 9.5944 40 1 2.5666 2.1108 12.8619 41 1 2.5380 -1.5439 3.7745 42 1 4.0302 -0.6045 3.4702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480115381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:52 Heat of formation + Delta-G solvation = -219.849562 kcal Electronic energy + Delta-G solvation = -29127.162669 eV Core-core repulsion = 24306.174229 eV Total energy + Delta-G solvation = -4820.988440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.44281 -47.98049 -47.82546 -40.61443 -38.63755 -37.84362 -35.00054 -34.38038 -33.81975 -31.31379 -30.77214 -29.15702 -27.00112 -26.37496 -24.59390 -23.66907 -22.83725 -21.12761 -19.98659 -19.35372 -19.03471 -18.73866 -17.99852 -17.75068 -17.38674 -16.64502 -16.03487 -15.65922 -15.33507 -14.97319 -14.69802 -14.65282 -14.55843 -14.32220 -14.13957 -14.05851 -13.98986 -13.84512 -13.74335 -13.61230 -13.47517 -13.13724 -12.95998 -12.70644 -12.56834 -12.38355 -12.08496 -11.90305 -11.72391 -11.54332 -11.45444 -11.09512 -11.05391 -10.42387 -10.31712 -10.25817 -9.55526 -9.06329 -8.55549 -8.18518 -8.01292 -6.46257 -3.87157 1.87364 2.21761 2.55534 3.14897 3.24196 3.27743 3.30193 3.53365 3.59135 3.83935 3.90940 4.07803 4.16652 4.31573 4.32914 4.35850 4.48641 4.63474 4.90729 4.95985 5.00377 5.03348 5.10897 5.13865 5.21885 5.43401 5.46327 5.58032 5.65639 5.74669 5.78341 5.84727 5.89576 6.19746 6.98102 7.06590 7.48099 7.51269 7.60988 8.01278 8.55753 9.13251 9.48772 9.99773 10.71345 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038912 B = 0.001794 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.392665 B =15602.629804 C =15804.552453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 H 0.131 0.869 4 C 0.536 3.464 5 O -0.515 6.515 6 N -0.612 5.612 7 C 0.098 3.902 8 C -0.166 4.166 9 C 0.079 3.921 10 H 0.095 0.905 11 N -0.656 5.656 12 C 0.052 3.948 13 C 0.439 3.561 14 O -0.583 6.583 15 N -0.562 5.562 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.116 3.884 25 C 0.470 3.530 26 F -0.180 7.180 27 F -0.179 7.179 28 F -0.164 7.164 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.355 0.645 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.087 0.913 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 2.813 -24.757 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 H 0.149 0.851 4 C 0.322 3.678 5 O -0.389 6.389 6 N -0.346 5.346 7 C -0.025 4.025 8 C -0.205 4.205 9 C -0.033 4.033 10 H 0.113 0.887 11 N -0.288 5.288 12 C -0.080 4.080 13 C 0.224 3.776 14 O -0.467 6.467 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.007 4.007 25 C 0.415 3.585 26 F -0.161 7.161 27 F -0.160 7.160 28 F -0.145 7.145 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.962 1.220 -24.657 25.939 hybrid contribution 0.010 1.283 0.520 1.384 sum -7.952 2.502 -24.137 25.536 Atomic orbital electron populations 1.21787 0.88717 1.05111 1.04773 1.22592 1.01826 1.02572 0.91207 0.85067 1.19320 0.78304 0.87084 0.83097 1.90836 1.52522 1.13088 1.82489 1.48346 1.62051 1.09296 1.14948 1.22105 1.01330 0.80700 0.98350 1.23452 1.03171 0.99598 0.94311 1.22737 0.97447 0.92445 0.90673 0.88714 1.59883 1.07393 1.61020 1.00464 1.21710 0.97466 0.98981 0.89877 1.19763 0.89164 0.84759 0.83897 1.90536 1.21293 1.51695 1.83185 1.41858 1.13902 1.57721 1.06401 1.19708 0.95026 1.41632 0.86572 0.87878 1.25273 0.96990 0.96956 0.98725 1.69606 1.17457 1.44488 1.22702 0.85847 0.79910 0.78799 0.79687 1.20409 1.20903 1.19362 1.22263 0.98912 0.98223 0.81276 1.19834 0.75716 0.78302 0.84653 1.93190 1.88498 1.80863 1.53571 1.93219 1.29662 1.96435 1.96720 1.93253 1.88130 1.36562 1.96584 0.90143 0.89754 0.89772 0.90989 0.90875 0.89477 0.89807 0.82453 0.93590 0.89413 0.77451 0.91834 0.89428 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.93 37.16 0.33 -0.43 16 2 C -0.16 -1.16 2.34 -91.77 -0.22 -1.38 16 3 H 0.13 0.58 6.97 -51.93 -0.36 0.22 16 4 C 0.54 5.75 6.58 -10.98 -0.07 5.68 16 5 O -0.51 -7.67 15.60 5.56 0.09 -7.58 16 6 N -0.61 -5.74 3.33 -170.51 -0.57 -6.31 16 7 C 0.10 0.60 6.15 -3.06 -0.02 0.58 16 8 C -0.17 -1.22 6.55 -24.89 -0.16 -1.39 16 9 C 0.08 0.81 3.38 -65.56 -0.22 0.59 16 10 H 0.09 0.93 7.83 -51.93 -0.41 0.53 16 11 N -0.66 -9.35 6.04 -105.72 -0.64 -9.99 16 12 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 13 C 0.44 9.88 7.82 -10.99 -0.09 9.79 16 14 O -0.58 -15.32 15.78 5.55 0.09 -15.23 16 15 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 16 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 17 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16 20 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.12 1.28 6.63 -2.52 -0.02 1.27 16 25 C 0.47 4.44 2.57 37.16 0.10 4.53 16 26 F -0.18 -1.50 16.83 2.25 0.04 -1.46 16 27 F -0.18 -1.97 17.02 2.25 0.04 -1.93 16 28 F -0.16 -1.91 15.36 2.25 0.03 -1.87 16 29 H 0.08 0.53 7.75 -51.93 -0.40 0.13 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.30 7.85 -51.93 -0.41 -0.10 16 32 H 0.07 0.34 7.73 -51.93 -0.40 -0.06 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 36 H 0.35 5.18 7.89 -39.29 -0.31 4.87 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 39 H 0.39 9.12 7.90 -40.82 -0.32 8.79 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.09 1.10 7.99 -51.93 -0.41 0.69 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -33.34 365.25 -5.88 -39.22 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.47 Total: 8.86 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -0.64 Total: 12.21 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.54 Total: -53.39 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.17 Total: -22.81 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.11 Total: -5.27 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.34 -5.88 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480115381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.630 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds