Wall clock time and date at job start Tue Mar 31 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47081 * 2 1 4 4 C 1.50705 * 109.47063 * 119.99529 * 2 1 3 5 5 O 1.21274 * 119.99871 * 85.25770 * 4 2 1 6 6 N 1.34775 * 119.99792 * 265.25423 * 4 2 1 7 7 C 1.47025 * 125.65134 * 4.70204 * 6 4 2 8 8 C 1.54338 * 107.26394 * 178.84632 * 7 6 4 9 9 C 1.55150 * 103.02267 * 338.13825 * 8 7 6 10 10 H 1.08997 * 111.01002 * 277.23450 * 9 8 7 11 11 N 1.46905 * 111.03729 * 153.39572 * 9 8 7 12 12 C 1.46896 * 110.99806 * 92.78416 * 11 9 8 13 13 C 1.50705 * 109.47047 * 179.97438 * 12 11 9 14 14 O 1.21289 * 119.99665 * 0.02562 * 13 12 11 15 15 N 1.34766 * 119.99980 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00020 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.38957 * 120.00110 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99863 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47255 * 89.99957 * 20 18 16 22 22 H 1.48498 * 109.47381 * 210.00249 * 20 18 16 23 23 H 1.48506 * 109.46932 * 330.00068 * 20 18 16 24 24 C 1.47427 * 125.64519 * 185.00701 * 6 4 2 25 25 C 1.52997 * 109.47533 * 239.99966 * 2 1 3 26 26 F 1.39897 * 109.47420 * 59.99622 * 25 2 1 27 27 F 1.39901 * 109.47401 * 180.02562 * 25 2 1 28 28 F 1.39904 * 109.46790 * 299.99908 * 25 2 1 29 29 H 1.09001 * 109.46928 * 178.24561 * 1 2 3 30 30 H 1.08997 * 109.47313 * 298.24397 * 1 2 3 31 31 H 1.09005 * 109.46999 * 58.24499 * 1 2 3 32 32 H 1.08998 * 109.88098 * 298.39033 * 7 6 4 33 33 H 1.08996 * 109.88158 * 59.55556 * 7 6 4 34 34 H 1.09000 * 110.84705 * 219.66930 * 8 7 6 35 35 H 1.09004 * 110.66631 * 96.52636 * 8 7 6 36 36 H 1.00902 * 110.99399 * 328.83425 * 11 9 8 37 37 H 1.09002 * 109.47516 * 300.00125 * 12 11 9 38 38 H 1.09000 * 109.46860 * 60.00453 * 12 11 9 39 39 H 0.97004 * 120.00133 * 0.02562 * 15 13 12 40 40 H 0.96996 * 119.99900 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.36719 * 322.92879 * 24 6 4 42 42 H 1.08998 * 110.36601 * 85.14711 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.1526 -1.9171 1.2275 6 7 2.3480 -0.0044 2.3344 7 6 2.1594 1.4432 2.5089 8 6 2.6337 1.7984 3.9339 9 6 2.5439 0.4415 4.6808 10 1 1.5276 0.2522 5.0264 11 7 3.4953 0.3909 5.7990 12 6 2.8627 0.8335 7.0487 13 6 3.8667 0.7676 8.1707 14 8 4.9980 0.3896 7.9506 15 7 3.5076 1.1286 9.4184 16 6 4.4211 1.0691 10.4390 17 1 5.4287 0.7334 10.2430 18 6 4.0509 1.4419 11.7254 19 7 2.8251 1.8510 11.9639 20 14 5.2958 1.3616 13.1158 21 1 6.0129 2.6583 13.2137 22 1 4.5926 1.0869 14.3946 23 1 6.2716 0.2755 12.8443 24 6 2.9454 -0.5550 3.5646 25 6 2.0401 -0.7212 -1.2492 26 9 1.5738 -0.0619 -2.3915 27 9 3.4391 -0.7217 -1.2489 28 9 1.5738 -2.0403 -1.2491 29 1 -0.3633 -1.0272 -0.0315 30 1 -0.3634 0.4863 0.9053 31 1 -0.3633 0.5409 -0.8739 32 1 2.7525 1.9857 1.7726 33 1 1.1050 1.6957 2.3974 34 1 1.9723 2.5346 4.3907 35 1 3.6610 2.1626 3.9179 36 1 4.3193 0.9373 5.5975 37 1 2.5114 1.8591 6.9349 38 1 2.0184 0.1836 7.2786 39 1 2.6027 1.4306 9.5944 40 1 2.5666 2.1108 12.8619 41 1 2.5380 -1.5439 3.7745 42 1 4.0302 -0.6045 3.4702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480115381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:51 Heat of formation + Delta-G solvation = -245.037867 kcal Electronic energy + Delta-G solvation = -29128.254916 eV Core-core repulsion = 24306.174229 eV Total energy + Delta-G solvation = -4822.080687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -51.19121 -48.71558 -48.62163 -41.40062 -40.17211 -38.95974 -36.23594 -35.65837 -34.97524 -33.25923 -31.63885 -30.00745 -27.90916 -27.50886 -25.94602 -24.76738 -23.46259 -21.95515 -21.11440 -20.68715 -19.91692 -19.76029 -19.48528 -18.53642 -18.17699 -17.69425 -17.33985 -16.79274 -16.39052 -16.30108 -15.94778 -15.65352 -15.50774 -15.38414 -15.18604 -15.08374 -14.83788 -14.76453 -14.65192 -14.28055 -14.18169 -14.11058 -14.02308 -13.84235 -13.47830 -13.31489 -13.14508 -13.03989 -12.88550 -12.64150 -12.46373 -12.41708 -12.36423 -12.12175 -11.74460 -11.49783 -11.14373 -10.35139 -10.00409 -9.81621 -9.30630 -8.46183 -5.94389 1.12521 1.38415 1.42720 1.48884 1.55121 1.83942 2.06882 2.29875 2.60658 2.84429 2.92720 2.94764 3.21517 3.37144 3.47680 3.64171 3.75418 3.82182 3.89160 4.03353 4.25279 4.29361 4.37322 4.51869 4.57407 4.61234 4.64926 4.66887 4.78709 4.86008 4.99034 5.06700 5.10430 5.14646 5.42139 5.89144 6.09687 6.28198 6.37755 6.61242 6.83126 7.13947 7.57896 8.13426 8.71012 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038912 B = 0.001794 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.392665 B =15602.629804 C =15804.552453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 H 0.169 0.831 4 C 0.529 3.471 5 O -0.569 6.569 6 N -0.608 5.608 7 C 0.094 3.906 8 C -0.157 4.157 9 C 0.083 3.917 10 H 0.105 0.895 11 N -0.676 5.676 12 C 0.070 3.930 13 C 0.436 3.564 14 O -0.626 6.626 15 N -0.573 5.573 16 C -0.333 4.333 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.991 3.009 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.275 1.275 24 C 0.115 3.885 25 C 0.462 3.538 26 F -0.172 7.172 27 F -0.192 7.192 28 F -0.182 7.182 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.350 0.650 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.064 0.936 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.147 5.127 -25.421 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 H 0.186 0.814 4 C 0.317 3.683 5 O -0.447 6.447 6 N -0.341 5.341 7 C -0.027 4.027 8 C -0.196 4.196 9 C -0.028 4.028 10 H 0.123 0.877 11 N -0.308 5.308 12 C -0.062 4.062 13 C 0.223 3.777 14 O -0.512 6.512 15 N -0.210 5.210 16 C -0.463 4.463 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.815 3.185 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.200 1.200 24 C -0.008 4.008 25 C 0.408 3.592 26 F -0.153 7.153 27 F -0.174 7.174 28 F -0.164 7.164 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.232 0.768 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.536 3.581 -25.333 27.304 hybrid contribution 0.510 0.532 0.656 0.986 sum -9.026 4.113 -24.677 26.596 Atomic orbital electron populations 1.21870 0.86891 1.04585 1.06858 1.22663 1.03100 1.03262 0.87878 0.81392 1.19948 0.77576 0.86683 0.84112 1.90811 1.54871 1.15580 1.83477 1.48399 1.60994 1.10796 1.13898 1.22420 1.03827 0.78389 0.98092 1.23400 1.03751 0.97857 0.94627 1.22694 0.96671 0.94203 0.89230 0.87691 1.59790 1.08313 1.61540 1.01173 1.21541 0.95422 1.01362 0.87912 1.20957 0.89764 0.82312 0.84623 1.90506 1.23738 1.52973 1.84001 1.41924 1.13733 1.58549 1.06810 1.19640 0.94859 1.43508 0.88261 0.90458 1.26004 0.98797 0.96133 1.00310 1.69658 1.18407 1.44411 1.23490 0.84957 0.77733 0.78737 0.77102 1.19524 1.19638 1.20012 1.22082 0.98035 0.97789 0.82896 1.20245 0.75169 0.77899 0.85911 1.93202 1.88290 1.80485 1.53336 1.93191 1.30865 1.96456 1.96850 1.93216 1.88266 1.38157 1.96734 0.92059 0.87691 0.87584 0.88600 0.87668 0.87400 0.90108 0.82935 0.90351 0.87799 0.76847 0.91308 0.91783 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.93 71.98 0.64 -0.44 16 2 C -0.15 -1.78 2.34 -11.54 -0.03 -1.80 16 3 H 0.17 0.74 6.97 -2.39 -0.02 0.72 16 4 C 0.53 10.80 6.58 87.66 0.58 11.37 16 5 O -0.57 -17.46 15.60 -3.01 -0.05 -17.51 16 6 N -0.61 -10.27 3.33 -811.75 -2.70 -12.97 16 7 C 0.09 0.75 6.15 86.73 0.53 1.29 16 8 C -0.16 -1.75 6.55 31.79 0.21 -1.54 16 9 C 0.08 1.54 3.38 46.31 0.16 1.70 16 10 H 0.11 1.77 7.83 -2.39 -0.02 1.75 16 11 N -0.68 -18.63 6.04 -488.39 -2.95 -21.58 16 12 C 0.07 2.10 6.03 85.56 0.52 2.61 16 13 C 0.44 19.70 7.82 87.66 0.69 20.38 16 14 O -0.63 -33.71 15.78 -3.06 -0.05 -33.76 16 15 N -0.57 -28.28 5.29 -306.99 -1.62 -29.91 16 16 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 17 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 18 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 19 N -0.92 -48.41 13.05 21.67 0.28 -48.12 16 20 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.12 2.53 6.63 86.86 0.58 3.11 16 25 C 0.46 8.26 2.57 71.98 0.18 8.45 16 26 F -0.17 -2.56 16.83 44.97 0.76 -1.80 16 27 F -0.19 -4.15 17.02 44.97 0.77 -3.39 16 28 F -0.18 -4.31 15.36 44.97 0.69 -3.62 16 29 H 0.06 0.73 7.75 -2.39 -0.02 0.71 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.11 0.36 7.85 -2.38 -0.02 0.35 16 32 H 0.10 0.40 7.73 -2.39 -0.02 0.38 16 33 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.00 7.75 -2.38 -0.02 0.98 16 36 H 0.35 10.08 7.89 -89.69 -0.71 9.37 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.83 8.09 -2.39 -0.02 2.81 16 39 H 0.40 18.42 7.90 -92.70 -0.73 17.69 16 40 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 41 H 0.06 1.69 7.99 -2.39 -0.02 1.67 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -76.34 365.25 2.14 -74.20 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.36 Total: 26.90 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 5.33 Total: 27.20 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -6.99 Total: -112.57 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.10 Total: -51.27 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 2.21 Total: -8.81 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -76.34 2.14 -74.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480115381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.837 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds