Wall clock time and date at job start Tue Mar 31 2020 22:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 N 1.46496 * 109.47045 * 119.99399 * 2 1 3 5 5 C 1.34777 * 120.00258 * 300.00664 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 F 1.39900 * 109.46715 * 179.97438 * 7 5 4 9 9 F 1.39897 * 109.47068 * 299.99527 * 7 5 4 10 10 F 1.39895 * 109.47042 * 59.99836 * 7 5 4 11 11 C 1.50699 * 109.47389 * 239.99750 * 2 1 3 12 12 O 1.21287 * 119.99871 * 25.00105 * 11 2 1 13 13 N 1.34774 * 120.00195 * 204.99839 * 11 2 1 14 14 C 1.46500 * 120.00083 * 180.02562 * 13 11 2 15 15 H 1.08991 * 112.84814 * 23.80654 * 14 13 11 16 16 C 1.53774 * 113.61178 * 155.00176 * 14 13 11 17 17 C 1.53784 * 87.08116 * 139.97865 * 16 14 13 18 18 H 1.08994 * 113.61468 * 219.93145 * 17 16 14 19 19 N 1.46501 * 113.61082 * 89.11317 * 17 16 14 20 20 C 1.36943 * 119.99618 * 155.00183 * 19 17 16 21 21 H 1.07993 * 120.00444 * 359.97438 * 20 19 17 22 22 C 1.38810 * 119.99681 * 179.97438 * 20 19 17 23 23 N 1.31622 * 120.00414 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46608 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47292 * 119.99792 * 24 22 20 27 27 H 1.48501 * 109.47217 * 240.00141 * 24 22 20 28 28 C 1.53777 * 87.08199 * 334.56724 * 17 16 14 29 29 H 1.09001 * 109.47142 * 300.00234 * 1 2 3 30 30 H 1.09002 * 109.47097 * 60.00199 * 1 2 3 31 31 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47045 * 299.99833 * 3 2 1 34 34 H 1.08998 * 109.47624 * 59.99457 * 3 2 1 35 35 H 0.96999 * 119.99694 * 120.00054 * 4 2 1 36 36 H 0.97004 * 119.99693 * 0.02562 * 13 11 2 37 37 H 1.09005 * 113.61779 * 254.52758 * 16 14 13 38 38 H 1.09005 * 113.62163 * 25.43452 * 16 14 13 39 39 H 0.96996 * 120.00030 * 335.00628 * 19 17 16 40 40 H 0.97003 * 120.00496 * 179.97438 * 23 22 20 41 41 H 1.08999 * 113.61161 * 270.88812 * 28 17 16 42 42 H 1.08994 * 113.61817 * 139.97733 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6926 -0.2300 2.4203 6 8 0.9957 0.7563 2.5315 7 6 2.1946 -0.9407 3.6508 8 9 1.7287 -0.2808 4.7930 9 9 1.7277 -2.2595 3.6506 10 9 3.5935 -0.9412 3.6510 11 6 2.0324 -0.7104 -1.2304 12 8 1.3371 -0.7706 -2.2223 13 7 3.2544 -1.2789 -1.2286 14 6 3.7430 -1.9691 -2.4249 15 1 3.2606 -1.6240 -3.3393 16 6 5.2767 -2.0246 -2.5208 17 6 5.1138 -3.4634 -3.0385 18 1 5.8579 -4.1559 -2.6450 19 7 4.9690 -3.5505 -4.4938 20 6 5.3209 -4.7002 -5.1492 21 1 5.7056 -5.5425 -4.5935 22 6 5.1832 -4.7829 -6.5280 23 7 4.7148 -3.7562 -7.2054 24 14 5.6625 -6.3515 -7.4222 25 1 6.1579 -7.3492 -6.4402 26 1 4.4779 -6.8993 -8.1304 27 1 6.7334 -6.0526 -8.4066 28 6 3.7750 -3.5001 -2.2830 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.5760 -1.4791 1.1072 36 1 3.8103 -1.2311 -0.4351 37 1 5.6932 -1.3393 -3.2591 38 1 5.7773 -1.9624 -1.5544 39 1 4.6239 -2.7938 -4.9929 40 1 4.6189 -3.8139 -8.1690 41 1 3.8649 -3.8411 -1.2516 42 1 2.9790 -4.0059 -2.8293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480172762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:32 Heat of formation + Delta-G solvation = -180.356450 kcal Electronic energy + Delta-G solvation = -29994.805215 eV Core-core repulsion = 25175.529325 eV Total energy + Delta-G solvation = -4819.275890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.82186 -48.34786 -48.30543 -41.33737 -39.83492 -38.31215 -36.19557 -34.23311 -32.71305 -32.55670 -29.79957 -28.11161 -27.67471 -25.37880 -25.23495 -23.81528 -22.61064 -21.86641 -20.22068 -20.11529 -19.26696 -19.16447 -18.70477 -17.73725 -17.42869 -16.64796 -16.15830 -15.72476 -15.44924 -15.04228 -15.03101 -14.94651 -14.76217 -14.70628 -14.46567 -14.40985 -14.40843 -14.09102 -13.89895 -13.49591 -13.23969 -12.86555 -12.75188 -12.47982 -12.34765 -12.16831 -12.10577 -11.78411 -11.75627 -10.94573 -10.93092 -10.82436 -10.39806 -10.21049 -10.11642 -10.03392 -9.80250 -9.68573 -9.01984 -8.92364 -7.07649 -5.85033 -3.15636 1.16695 1.24625 2.27582 2.59147 2.85697 3.09915 3.39135 3.44685 3.47210 3.50713 3.58775 4.16695 4.47752 4.50881 4.53753 4.92713 4.97231 5.10960 5.26177 5.27582 5.32587 5.38608 5.46741 5.68187 5.72076 5.77903 5.87904 5.91049 5.95814 6.03188 6.23186 6.31777 6.45719 6.59311 6.64569 6.87322 6.90781 7.33369 7.64441 7.98600 8.32846 9.43973 9.99113 10.32820 11.37035 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002436 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.427423 B =11493.790355 C =12230.028215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 C -0.163 4.163 4 N -0.696 5.696 5 C 0.491 3.509 6 O -0.466 6.466 7 C 0.450 3.550 8 F -0.152 7.152 9 F -0.165 7.165 10 F -0.166 7.166 11 C 0.513 3.487 12 O -0.512 6.512 13 N -0.714 5.714 14 C 0.123 3.877 15 H 0.117 0.883 16 C -0.165 4.165 17 C 0.172 3.828 18 H 0.070 0.930 19 N -0.705 5.705 20 C -0.247 4.247 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.909 3.091 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.184 4.184 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.411 0.589 36 H 0.393 0.607 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.069 0.931 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 8.976 23.335 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 C -0.221 4.221 4 N -0.352 5.352 5 C 0.268 3.732 6 O -0.338 6.338 7 C 0.392 3.608 8 F -0.133 7.133 9 F -0.146 7.146 10 F -0.147 7.147 11 C 0.297 3.703 12 O -0.386 6.386 13 N -0.365 5.365 14 C 0.019 3.981 15 H 0.135 0.865 16 C -0.205 4.205 17 C 0.059 3.941 18 H 0.088 0.912 19 N -0.344 5.344 20 C -0.378 4.378 21 H 0.092 0.908 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.227 4.227 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.248 0.752 36 H 0.228 0.772 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.195 9.466 22.552 25.003 hybrid contribution 0.766 -1.131 -0.039 1.366 sum -4.429 8.335 22.513 24.412 Atomic orbital electron populations 1.22099 0.90613 1.03818 1.04663 1.20946 0.97266 0.93896 0.80834 1.22221 1.01867 0.92792 1.05203 1.46115 1.52637 1.31879 1.04567 1.20228 0.82839 0.85903 0.84193 1.90838 1.34600 1.23518 1.84805 1.20256 0.76441 0.78025 0.86062 1.93282 1.88260 1.80447 1.51330 1.93293 1.88264 1.36359 1.96729 1.93283 1.28457 1.96233 1.96743 1.20224 0.82250 0.78893 0.88969 1.90802 1.56068 1.57758 1.33959 1.46274 1.17024 1.55973 1.17245 1.22781 0.94839 0.92594 0.87846 0.86547 1.23921 0.94076 1.01065 1.01394 1.20897 0.93975 0.93257 0.85978 0.91219 1.42209 1.76193 1.16382 0.99575 1.19303 1.36093 0.92441 0.89930 0.90839 1.24793 1.01619 0.97811 0.96479 1.69673 1.51190 1.29845 1.06961 0.86095 0.77687 0.82532 0.79701 1.20454 1.21765 1.21781 1.24338 1.03263 0.94538 1.00524 0.89811 0.89562 0.91635 0.91482 0.89916 0.89203 0.75219 0.77233 0.90680 0.90254 0.77969 0.93357 0.91204 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 7.93 37.16 0.29 -1.23 16 2 C 0.16 1.47 0.98 -132.97 -0.13 1.34 16 3 C -0.16 -1.37 8.38 37.16 0.31 -1.06 16 4 N -0.70 -5.09 4.86 -48.68 -0.24 -5.33 16 5 C 0.49 4.03 6.78 -10.98 -0.07 3.95 16 6 O -0.47 -4.87 12.82 5.56 0.07 -4.79 16 7 C 0.45 3.38 3.43 36.01 0.12 3.50 16 8 F -0.15 -1.33 16.92 2.25 0.04 -1.30 16 9 F -0.17 -1.24 17.30 2.25 0.04 -1.20 16 10 F -0.17 -1.15 17.30 2.25 0.04 -1.11 16 11 C 0.51 6.27 6.65 -10.99 -0.07 6.20 16 12 O -0.51 -8.58 15.70 5.55 0.09 -8.50 16 13 N -0.71 -7.75 5.05 -53.02 -0.27 -8.02 16 14 C 0.12 1.79 4.12 -67.12 -0.28 1.51 16 15 H 0.12 2.11 7.46 -51.93 -0.39 1.72 16 16 C -0.16 -2.33 7.58 -25.92 -0.20 -2.52 16 17 C 0.17 3.11 4.56 -67.12 -0.31 2.81 16 18 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 19 N -0.71 -16.88 5.31 -52.64 -0.28 -17.16 16 20 C -0.25 -6.62 9.97 -15.06 -0.15 -6.77 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 24 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 28 C -0.18 -2.91 7.68 -25.92 -0.20 -3.10 16 29 H 0.08 0.81 6.17 -51.93 -0.32 0.49 16 30 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.78 6.17 -51.93 -0.32 0.46 16 35 H 0.41 2.30 7.24 -40.82 -0.30 2.00 16 36 H 0.39 2.97 7.47 -40.82 -0.30 2.67 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 39 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -31.70 364.23 -5.38 -37.07 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.28 Total: 10.58 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.77 Total: 4.25 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.06 Total: -57.38 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.16 Total: -13.29 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.12 Total: -3.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.70 -5.38 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480172762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.284 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds