Wall clock time and date at job start Tue Mar 31 2020 21:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46906 * 2 1 4 4 C 1.50695 * 109.47180 * 239.99822 * 2 1 3 5 5 O 1.21283 * 120.00333 * 240.00328 * 4 2 1 6 6 N 1.34777 * 120.00084 * 60.00327 * 4 2 1 7 7 C 1.46500 * 119.99723 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00159 * 180.02562 * 6 4 2 9 9 C 1.53514 * 114.16894 * 239.99852 * 8 6 4 10 10 N 1.47482 * 87.93039 * 220.32940 * 9 8 6 11 11 C 1.46901 * 110.99764 * 138.70591 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99672 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47117 * 59.99412 * 19 17 15 21 21 H 1.48498 * 109.47600 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00019 * 19 17 15 23 23 C 1.47480 * 87.83699 * 27.01095 * 10 9 8 24 24 C 1.53005 * 109.46620 * 120.00069 * 2 1 3 25 25 F 1.39896 * 109.46553 * 180.02562 * 24 2 1 26 26 F 1.39895 * 109.47055 * 299.99530 * 24 2 1 27 27 F 1.39898 * 109.47377 * 60.00149 * 24 2 1 28 28 H 1.08999 * 109.47032 * 59.99881 * 1 2 3 29 29 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47276 * 300.00329 * 1 2 3 31 31 H 1.09005 * 109.47136 * 269.99642 * 7 6 4 32 32 H 1.09000 * 109.47308 * 30.00169 * 7 6 4 33 33 H 1.09001 * 109.47074 * 150.00738 * 7 6 4 34 34 H 1.08999 * 113.38392 * 13.08055 * 8 6 4 35 35 H 1.08994 * 113.47382 * 105.55784 * 9 8 6 36 36 H 1.09003 * 113.47448 * 335.09691 * 9 8 6 37 37 H 1.09002 * 109.47401 * 49.99700 * 11 10 9 38 38 H 1.09001 * 109.46874 * 289.99713 * 11 10 9 39 39 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 40 40 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.47664 * 87.75895 * 23 10 9 42 42 H 1.08994 * 113.47488 * 218.22090 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8642 0.9409 -2.5889 8 6 2.1947 -0.9409 -3.6507 9 6 3.0647 -0.0706 -4.5684 10 7 2.3801 -0.6918 -5.7175 11 6 2.0747 0.3065 -6.7510 12 6 1.6046 -0.3920 -8.0008 13 8 1.5307 -1.6024 -8.0278 14 7 1.2652 0.3284 -9.0882 15 6 0.8370 -0.3071 -10.2251 16 1 0.7720 -1.3849 -10.2494 17 6 0.4876 0.4354 -11.3463 18 7 0.5671 1.7469 -11.3169 19 14 -0.0965 -0.4302 -12.8951 20 1 -1.3183 -1.2176 -12.5912 21 1 -0.4057 0.5789 -13.9397 22 1 0.9696 -1.3403 -13.3854 23 6 1.2189 -0.9117 -4.8354 24 6 2.0399 -0.7213 1.2493 25 9 3.4389 -0.7208 1.2496 26 9 1.5736 -0.0618 2.3915 27 9 1.5736 -2.0403 1.2493 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.1837 0.6426 -2.6226 32 1 1.0273 1.5996 -1.7360 33 1 1.1218 1.4664 -3.5085 34 1 2.6130 -1.9254 -3.4412 35 1 4.1268 -0.3096 -4.5145 36 1 2.8667 0.9968 -4.4702 37 1 2.9712 0.8852 -6.9735 38 1 1.2915 0.9739 -6.3912 39 1 1.3239 1.2963 -9.0665 40 1 0.3228 2.2652 -12.0995 41 1 0.5282 -0.0689 -4.8085 42 1 0.7167 -1.8636 -5.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483875478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:04 Heat of formation + Delta-G solvation = -169.044790 kcal Electronic energy + Delta-G solvation = -29653.381557 eV Core-core repulsion = 24834.596177 eV Total energy + Delta-G solvation = -4818.785380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.39174 -47.91372 -47.78793 -41.16052 -39.54709 -37.79247 -35.72550 -34.22897 -33.85782 -31.30697 -30.08889 -27.79650 -26.70664 -26.08547 -25.78159 -24.38912 -23.02868 -20.67042 -19.54796 -19.25963 -18.99688 -18.66404 -17.97823 -17.77877 -17.19986 -16.67148 -16.13872 -16.03998 -15.28120 -14.99781 -14.78968 -14.62437 -14.52695 -14.34321 -14.21903 -14.19881 -13.95068 -13.94565 -13.85873 -13.53216 -13.20671 -13.02419 -12.85265 -12.75064 -12.53041 -12.39534 -12.32351 -11.81239 -11.72409 -11.52460 -11.09862 -10.99435 -10.79255 -10.45945 -10.29692 -10.22728 -9.51448 -9.04045 -8.91887 -8.26437 -7.98664 -6.43951 -3.84772 2.01669 2.08422 2.53745 3.18587 3.24278 3.28626 3.29035 3.50841 3.61418 3.86491 3.97052 4.09431 4.21582 4.28002 4.33475 4.41506 4.55267 4.65356 4.85076 4.88114 4.93298 5.01411 5.09679 5.17098 5.21450 5.27445 5.45932 5.52694 5.57325 5.65138 5.77481 5.91668 6.04432 6.22030 6.41837 6.82720 7.04710 7.53040 7.58719 8.03409 8.59551 9.16209 9.51678 10.04094 10.73815 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.035774 B = 0.001977 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.512581 B =14159.538561 C =14320.468143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.162 4.162 3 H 0.139 0.861 4 C 0.524 3.476 5 O -0.514 6.514 6 N -0.596 5.596 7 C 0.064 3.936 8 C 0.117 3.883 9 C -0.018 4.018 10 N -0.432 5.432 11 C 0.012 3.988 12 C 0.445 3.555 13 O -0.573 6.573 14 N -0.566 5.566 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.004 4.004 24 C 0.473 3.527 25 F -0.173 7.173 26 F -0.182 7.182 27 F -0.171 7.171 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.073 0.927 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 4.996 24.854 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.185 4.185 3 H 0.157 0.843 4 C 0.310 3.690 5 O -0.389 6.389 6 N -0.328 5.328 7 C -0.079 4.079 8 C 0.014 3.986 9 C -0.148 4.148 10 N -0.155 5.155 11 C -0.120 4.120 12 C 0.230 3.770 13 O -0.456 6.456 14 N -0.204 5.204 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.545 5.545 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.134 4.134 24 C 0.418 3.582 25 F -0.154 7.154 26 F -0.163 7.163 27 F -0.152 7.152 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.224 0.776 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.081 3.218 24.348 24.560 hybrid contribution -0.587 1.207 -0.388 1.397 sum -0.669 4.425 23.960 24.374 Atomic orbital electron populations 1.22136 0.89150 1.05270 1.05598 1.22632 1.01596 1.02926 0.91315 0.84303 1.19773 0.80606 0.84649 0.84004 1.90834 1.36775 1.25347 1.85957 1.47670 1.50942 1.28984 1.05220 1.22111 0.95003 0.87053 1.03698 1.22901 0.96099 0.98014 0.81590 1.24403 1.01363 0.97979 0.91097 1.68798 1.11318 1.32045 1.03301 1.22499 1.01169 0.94016 0.94362 1.19625 0.84605 0.88146 0.84606 1.90538 1.57813 1.13766 1.83521 1.41859 1.58282 1.09094 1.11126 1.19648 1.40267 0.93816 0.89072 0.87991 1.25249 0.97699 0.95468 0.99524 1.69601 1.48825 1.04753 1.31331 0.85918 0.79334 0.78570 0.80415 1.19917 1.20982 1.19861 1.24359 0.94698 1.03744 0.90593 1.19739 0.75993 0.77950 0.84470 1.93226 1.29201 1.96347 1.96651 1.93185 1.88578 1.80845 1.53713 1.93217 1.88256 1.37079 1.96644 0.88671 0.90389 0.89833 0.91190 0.90451 0.90225 0.84652 0.88893 0.91121 0.89201 0.92316 0.77580 0.91843 0.90877 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 8.58 37.16 0.32 -0.44 16 2 C -0.16 -1.10 1.90 -91.77 -0.17 -1.28 16 3 H 0.14 0.54 7.40 -51.93 -0.38 0.15 16 4 C 0.52 5.34 6.85 -10.99 -0.08 5.26 16 5 O -0.51 -7.43 14.35 5.55 0.08 -7.35 16 6 N -0.60 -5.26 3.11 -173.62 -0.54 -5.80 16 7 C 0.06 0.33 7.47 59.85 0.45 0.77 16 8 C 0.12 1.34 4.54 -67.72 -0.31 1.04 16 9 C -0.02 -0.21 7.24 -7.54 -0.05 -0.27 16 10 N -0.43 -6.82 5.82 -246.09 -1.43 -8.25 16 11 C 0.01 0.20 5.30 -4.97 -0.03 0.17 16 12 C 0.45 10.37 7.85 -10.98 -0.09 10.28 16 13 O -0.57 -15.69 16.01 5.55 0.09 -15.60 16 14 N -0.57 -14.11 5.29 -10.96 -0.06 -14.16 16 15 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 16 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 19 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.00 -0.05 7.13 -7.54 -0.05 -0.11 16 24 C 0.47 4.43 2.42 37.16 0.09 4.52 16 25 F -0.17 -1.97 16.40 2.25 0.04 -1.93 16 26 F -0.18 -1.51 16.80 2.25 0.04 -1.48 16 27 F -0.17 -1.95 15.88 2.25 0.04 -1.91 16 28 H 0.09 0.29 4.53 -51.93 -0.24 0.05 16 29 H 0.08 0.46 7.80 -51.93 -0.41 0.05 16 30 H 0.08 0.28 7.80 -51.93 -0.41 -0.13 16 31 H 0.07 0.29 6.95 -51.93 -0.36 -0.07 16 32 H 0.08 0.20 6.01 -51.93 -0.31 -0.11 16 33 H 0.08 0.41 6.19 -51.93 -0.32 0.09 16 34 H 0.14 1.82 7.29 -51.93 -0.38 1.44 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.67 6.74 -51.93 -0.35 0.32 16 37 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 38 H 0.06 0.83 7.30 -51.93 -0.38 0.45 16 39 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.07 0.81 5.85 -51.93 -0.30 0.51 16 42 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -34.73 353.63 -5.82 -40.55 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.93 Total: 6.17 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -0.16 Total: 12.04 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -1.31 Total: -51.70 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.17 Total: -22.94 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.11 Total: -5.31 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.73 -5.82 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483875478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.496 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds