Wall clock time and date at job start Tue Mar 31 2020 21:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46906 * 2 1 4 4 C 1.50695 * 109.47180 * 239.99822 * 2 1 3 5 5 O 1.21283 * 120.00333 * 240.00328 * 4 2 1 6 6 N 1.34777 * 120.00084 * 60.00327 * 4 2 1 7 7 C 1.46500 * 119.99723 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00159 * 180.02562 * 6 4 2 9 9 C 1.53514 * 114.16894 * 239.99852 * 8 6 4 10 10 N 1.47482 * 87.93039 * 220.32940 * 9 8 6 11 11 C 1.46901 * 110.99764 * 138.70591 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99672 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47117 * 59.99412 * 19 17 15 21 21 H 1.48498 * 109.47600 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00019 * 19 17 15 23 23 C 1.47480 * 87.83699 * 27.01095 * 10 9 8 24 24 C 1.53005 * 109.46620 * 120.00069 * 2 1 3 25 25 F 1.39896 * 109.46553 * 180.02562 * 24 2 1 26 26 F 1.39895 * 109.47055 * 299.99530 * 24 2 1 27 27 F 1.39898 * 109.47377 * 60.00149 * 24 2 1 28 28 H 1.08999 * 109.47032 * 59.99881 * 1 2 3 29 29 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47276 * 300.00329 * 1 2 3 31 31 H 1.09005 * 109.47136 * 269.99642 * 7 6 4 32 32 H 1.09000 * 109.47308 * 30.00169 * 7 6 4 33 33 H 1.09001 * 109.47074 * 150.00738 * 7 6 4 34 34 H 1.08999 * 113.38392 * 13.08055 * 8 6 4 35 35 H 1.08994 * 113.47382 * 105.55784 * 9 8 6 36 36 H 1.09003 * 113.47448 * 335.09691 * 9 8 6 37 37 H 1.09002 * 109.47401 * 49.99700 * 11 10 9 38 38 H 1.09001 * 109.46874 * 289.99713 * 11 10 9 39 39 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 40 40 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.47664 * 87.75895 * 23 10 9 42 42 H 1.08994 * 113.47488 * 218.22090 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8642 0.9409 -2.5889 8 6 2.1947 -0.9409 -3.6507 9 6 3.0647 -0.0706 -4.5684 10 7 2.3801 -0.6918 -5.7175 11 6 2.0747 0.3065 -6.7510 12 6 1.6046 -0.3920 -8.0008 13 8 1.5307 -1.6024 -8.0278 14 7 1.2652 0.3284 -9.0882 15 6 0.8370 -0.3071 -10.2251 16 1 0.7720 -1.3849 -10.2494 17 6 0.4876 0.4354 -11.3463 18 7 0.5671 1.7469 -11.3169 19 14 -0.0965 -0.4302 -12.8951 20 1 -1.3183 -1.2176 -12.5912 21 1 -0.4057 0.5789 -13.9397 22 1 0.9696 -1.3403 -13.3854 23 6 1.2189 -0.9117 -4.8354 24 6 2.0399 -0.7213 1.2493 25 9 3.4389 -0.7208 1.2496 26 9 1.5736 -0.0618 2.3915 27 9 1.5736 -2.0403 1.2493 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.1837 0.6426 -2.6226 32 1 1.0273 1.5996 -1.7360 33 1 1.1218 1.4664 -3.5085 34 1 2.6130 -1.9254 -3.4412 35 1 4.1268 -0.3096 -4.5145 36 1 2.8667 0.9968 -4.4702 37 1 2.9712 0.8852 -6.9735 38 1 1.2915 0.9739 -6.3912 39 1 1.3239 1.2963 -9.0665 40 1 0.3228 2.2652 -12.0995 41 1 0.5282 -0.0689 -4.8085 42 1 0.7167 -1.8636 -5.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483875478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:03 Heat of formation + Delta-G solvation = -196.621984 kcal Electronic energy + Delta-G solvation = -29654.577394 eV Core-core repulsion = 24834.596177 eV Total energy + Delta-G solvation = -4819.981216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.13051 -48.62761 -48.59184 -42.06570 -40.59114 -39.52073 -36.51458 -35.92066 -34.79535 -33.28109 -31.32733 -28.37289 -27.48064 -27.22428 -26.90660 -25.73505 -23.98965 -21.57927 -20.99626 -20.27224 -19.92037 -19.72080 -19.40205 -18.54770 -18.03074 -17.75372 -17.46559 -16.98798 -16.53171 -16.29688 -15.97122 -15.70124 -15.54037 -15.50201 -15.12843 -15.02085 -14.92178 -14.79246 -14.71460 -14.59453 -14.23223 -13.97293 -13.72592 -13.61812 -13.52482 -13.45920 -13.04246 -13.02431 -12.87166 -12.77924 -12.43428 -12.31957 -12.13543 -11.98005 -11.90710 -11.49206 -11.06371 -10.39087 -10.00267 -9.79025 -9.77606 -8.46164 -5.94479 1.28961 1.39400 1.39790 1.42005 1.52283 1.85053 2.07084 2.29344 2.63252 2.78248 2.97602 2.98753 3.20079 3.33029 3.42117 3.51728 3.69707 3.81233 3.92608 4.07510 4.14009 4.24943 4.27797 4.38056 4.52443 4.54916 4.60083 4.66704 4.73058 4.76587 4.90436 4.92731 5.16671 5.28530 5.31676 5.41572 5.86923 6.06472 6.15573 6.62121 6.86112 7.14372 7.57952 8.15144 8.70892 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.035774 B = 0.001977 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.512581 B =14159.538561 C =14320.468143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.149 4.149 3 H 0.178 0.822 4 C 0.518 3.482 5 O -0.568 6.568 6 N -0.588 5.588 7 C 0.048 3.952 8 C 0.128 3.872 9 C -0.004 4.004 10 N -0.476 5.476 11 C 0.027 3.973 12 C 0.440 3.560 13 O -0.622 6.622 14 N -0.574 5.574 15 C -0.334 4.334 16 H 0.075 0.925 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.990 3.010 20 H -0.272 1.272 21 H -0.269 1.269 22 H -0.275 1.275 23 C -0.001 4.001 24 C 0.464 3.536 25 F -0.189 7.189 26 F -0.175 7.175 27 F -0.188 7.188 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.101 0.899 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 7.858 25.573 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.171 4.171 3 H 0.196 0.804 4 C 0.305 3.695 5 O -0.447 6.447 6 N -0.319 5.319 7 C -0.092 4.092 8 C 0.023 3.977 9 C -0.134 4.134 10 N -0.199 5.199 11 C -0.105 4.105 12 C 0.228 3.772 13 O -0.508 6.508 14 N -0.212 5.212 15 C -0.463 4.463 16 H 0.093 0.907 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.813 3.187 20 H -0.197 1.197 21 H -0.193 1.193 22 H -0.200 1.200 23 C -0.131 4.131 24 C 0.410 3.590 25 F -0.170 7.170 26 F -0.156 7.156 27 F -0.170 7.170 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.042 6.141 25.082 25.844 hybrid contribution -0.290 0.293 -0.547 0.685 sum -1.332 6.435 24.534 25.399 Atomic orbital electron populations 1.22225 0.87174 1.04852 1.07674 1.22701 1.02915 1.03665 0.87838 0.80441 1.20379 0.79798 0.84118 0.85161 1.90816 1.39286 1.27815 1.86762 1.47672 1.50795 1.29606 1.03854 1.22541 0.95079 0.85895 1.05719 1.22425 0.95514 0.97346 0.82432 1.24392 1.00773 0.99567 0.88652 1.68714 1.13209 1.33146 1.04791 1.22373 1.02854 0.93856 0.91423 1.20845 0.82616 0.87830 0.85951 1.90506 1.59351 1.16248 1.84661 1.41919 1.58777 1.09364 1.11166 1.19578 1.42614 0.93032 0.91094 0.90701 1.25972 0.97174 0.96195 1.01740 1.69650 1.48614 1.05436 1.32271 0.85040 0.78655 0.77828 0.77135 1.19738 1.19342 1.20000 1.24370 0.94674 1.03397 0.90630 1.20213 0.75346 0.77605 0.85843 1.93192 1.30654 1.96382 1.96797 1.93194 1.88359 1.80478 1.53574 1.93180 1.88363 1.38658 1.96796 0.86402 0.92135 0.87903 0.89720 0.87059 0.89491 0.87604 0.89269 0.87748 0.87172 0.88805 0.76866 0.91279 0.88117 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.58 71.98 0.62 -0.34 16 2 C -0.15 -1.63 1.90 -11.54 -0.02 -1.65 16 3 H 0.18 0.53 7.40 -2.39 -0.02 0.51 16 4 C 0.52 9.85 6.85 87.66 0.60 10.45 16 5 O -0.57 -16.79 14.35 -3.04 -0.04 -16.83 16 6 N -0.59 -8.99 3.11 -821.59 -2.56 -11.54 16 7 C 0.05 0.27 7.47 127.77 0.95 1.22 16 8 C 0.13 2.82 4.54 45.45 0.21 3.03 16 9 C 0.00 -0.09 7.24 83.58 0.61 0.51 16 10 N -0.48 -14.53 5.82 -932.48 -5.43 -19.96 16 11 C 0.03 0.83 5.30 85.56 0.45 1.29 16 12 C 0.44 20.59 7.85 87.66 0.69 21.27 16 13 O -0.62 -35.09 16.01 -3.07 -0.05 -35.14 16 14 N -0.57 -28.78 5.29 -306.98 -1.62 -30.40 16 15 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 16 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 17 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 18 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 19 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C 0.00 -0.03 7.13 83.58 0.60 0.57 16 24 C 0.46 8.21 2.42 71.98 0.17 8.39 16 25 F -0.19 -4.24 16.40 44.97 0.74 -3.50 16 26 F -0.17 -2.59 16.80 44.97 0.76 -1.84 16 27 F -0.19 -4.36 15.88 44.97 0.71 -3.64 16 28 H 0.12 0.16 4.53 -2.39 -0.01 0.15 16 29 H 0.06 0.61 7.80 -2.39 -0.02 0.59 16 30 H 0.10 0.27 7.80 -2.39 -0.02 0.25 16 31 H 0.08 0.29 6.95 -2.38 -0.02 0.27 16 32 H 0.11 -0.09 6.01 -2.39 -0.01 -0.11 16 33 H 0.09 0.43 6.19 -2.39 -0.01 0.41 16 34 H 0.11 3.00 7.29 -2.39 -0.02 2.98 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 1.50 6.74 -2.39 -0.02 1.49 16 37 H 0.11 3.02 8.08 -2.39 -0.02 3.00 16 38 H 0.09 2.28 7.30 -2.39 -0.02 2.26 16 39 H 0.40 18.53 7.90 -92.71 -0.73 17.80 16 40 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.10 1.93 5.85 -2.39 -0.01 1.92 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -80.22 353.63 1.33 -78.89 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.36 Total: 20.94 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 6.15 Total: 26.63 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -9.32 Total: -110.08 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.09 Total: -51.98 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 2.21 Total: -8.98 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -80.22 1.33 -78.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483875478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.735 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds