Wall clock time and date at job start Tue Mar 31 2020 21:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47177 * 2 1 4 4 C 1.50697 * 109.46993 * 119.99559 * 2 1 3 5 5 O 1.21286 * 119.99782 * 98.60982 * 4 2 1 6 6 N 1.34777 * 120.00536 * 278.60520 * 4 2 1 7 7 C 1.46496 * 120.00563 * 185.54943 * 6 4 2 8 8 C 1.46504 * 119.99647 * 5.56060 * 6 4 2 9 9 C 1.53503 * 114.17352 * 126.44239 * 8 6 4 10 10 N 1.47481 * 87.93234 * 87.81215 * 9 8 6 11 11 C 1.46902 * 111.00217 * 138.70239 * 10 9 8 12 12 C 1.50695 * 109.47123 * 169.99647 * 11 10 9 13 13 O 1.21290 * 120.00390 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99665 * 179.72351 * 12 11 10 15 15 C 1.37101 * 119.99483 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00408 * 359.97438 * 15 14 12 17 17 C 1.38955 * 119.99507 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99785 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47334 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47357 * 120.00017 * 19 17 15 22 22 H 1.48502 * 109.47240 * 240.00286 * 19 17 15 23 23 C 1.47478 * 87.83837 * 27.01126 * 10 9 8 24 24 C 1.53000 * 109.47233 * 239.99821 * 2 1 3 25 25 F 1.39897 * 109.46806 * 299.99726 * 24 2 1 26 26 F 1.39894 * 109.47331 * 59.99731 * 24 2 1 27 27 F 1.39902 * 109.46802 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47149 * 58.05347 * 1 2 3 29 29 H 1.08997 * 109.46637 * 178.05211 * 1 2 3 30 30 H 1.09002 * 109.47069 * 298.05162 * 1 2 3 31 31 H 1.08997 * 109.47717 * 264.70691 * 7 6 4 32 32 H 1.09004 * 109.46577 * 24.71275 * 7 6 4 33 33 H 1.09002 * 109.47139 * 144.70328 * 7 6 4 34 34 H 1.09001 * 113.25247 * 353.48795 * 8 6 4 35 35 H 1.08995 * 113.47799 * 333.04328 * 9 8 6 36 36 H 1.09008 * 113.53165 * 202.58580 * 9 8 6 37 37 H 1.09007 * 109.46874 * 49.99742 * 11 10 9 38 38 H 1.08998 * 109.47272 * 289.99971 * 11 10 9 39 39 H 0.96998 * 120.00352 * 0.02562 * 14 12 11 40 40 H 0.97000 * 120.00386 * 180.02562 * 18 17 15 41 41 H 1.09000 * 113.48012 * 87.75206 * 23 10 9 42 42 H 1.08999 * 113.47534 * 218.22885 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3827 -1.8694 1.1610 6 7 2.0923 -0.0576 2.4082 7 6 2.6928 -0.7071 3.5759 8 6 1.5567 1.3013 2.5206 9 6 0.5392 1.4841 3.6553 10 7 1.6724 1.7778 4.5522 11 6 1.3545 2.8924 5.4548 12 6 2.4240 3.0047 6.5104 13 8 3.3594 2.2326 6.5107 14 7 2.3443 3.9671 7.4507 15 6 3.3176 4.0696 8.4108 16 1 4.1480 3.3791 8.4139 17 6 3.2351 5.0614 9.3805 18 7 2.2240 5.9007 9.3777 19 14 4.5609 5.2007 10.6890 20 1 5.5815 4.1436 10.4742 21 1 5.2046 6.5360 10.6014 22 1 3.9503 5.0327 12.0322 23 6 2.4141 2.2512 3.3687 24 6 2.0400 -0.7213 -1.2492 25 9 1.5737 -2.0403 -1.2491 26 9 1.5737 -0.0619 -2.3915 27 9 3.4391 -0.7217 -1.2488 28 1 -0.3633 0.5438 -0.8720 29 1 -0.3632 -1.0271 -0.0349 30 1 -0.3633 0.4833 0.9070 31 1 1.9104 -1.1723 4.1755 32 1 3.3985 -1.4692 3.2449 33 1 3.2167 0.0368 4.1761 34 1 1.2397 1.7193 1.5651 35 1 0.0072 0.5685 3.9132 36 1 -0.1292 2.3326 3.5080 37 1 0.3912 2.7104 5.9314 38 1 1.3081 3.8200 4.8843 39 1 1.5983 4.5871 7.4482 40 1 2.1666 6.5933 10.0544 41 1 2.2467 3.3046 3.1440 42 1 3.4711 1.9855 3.3837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483875479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:10 Heat of formation + Delta-G solvation = -170.713544 kcal Electronic energy + Delta-G solvation = -30018.549805 eV Core-core repulsion = 25199.692063 eV Total energy + Delta-G solvation = -4818.857742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.34385 -47.87499 -47.73186 -41.17997 -39.49117 -37.83842 -34.97355 -34.35446 -33.90918 -31.31990 -30.05051 -27.55546 -26.90193 -26.14388 -25.61549 -23.89215 -23.10663 -21.13575 -19.43337 -19.40126 -18.89695 -18.53885 -17.97514 -17.43942 -17.32411 -16.23591 -15.93524 -15.86452 -15.32342 -15.10437 -14.92147 -14.66822 -14.58495 -14.29234 -14.21224 -13.97034 -13.89151 -13.78860 -13.68161 -13.47204 -13.32961 -13.16541 -12.68795 -12.49147 -12.27407 -12.12628 -11.95186 -11.77589 -11.67979 -11.54125 -11.27429 -11.14504 -10.89490 -10.37795 -10.26982 -10.15318 -9.55517 -8.95856 -8.86495 -8.28857 -8.00944 -6.46253 -3.87029 2.04166 2.27784 2.67600 3.13054 3.24136 3.31112 3.35636 3.56800 3.67775 3.79210 3.85436 4.11197 4.16083 4.18363 4.39256 4.47340 4.59217 4.76328 4.98088 5.02184 5.06546 5.15951 5.20195 5.29755 5.48504 5.50712 5.54777 5.58126 5.63357 5.77212 5.83808 6.09983 6.17025 6.30016 6.36346 6.93498 7.09771 7.51259 7.72846 8.01524 8.56818 9.14116 9.49620 10.01314 10.71599 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.002164 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.208060 B =12934.562333 C =13188.785635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.166 4.166 3 H 0.136 0.864 4 C 0.522 3.478 5 O -0.518 6.518 6 N -0.576 5.576 7 C 0.087 3.913 8 C 0.097 3.903 9 C -0.017 4.017 10 N -0.435 5.435 11 C 0.008 3.992 12 C 0.446 3.554 13 O -0.575 6.575 14 N -0.566 5.566 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.007 4.007 24 C 0.472 3.528 25 F -0.167 7.167 26 F -0.181 7.181 27 F -0.177 7.177 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.083 0.917 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -6.211 -20.296 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 H 0.154 0.846 4 C 0.308 3.692 5 O -0.394 6.394 6 N -0.307 5.307 7 C -0.054 4.054 8 C -0.009 4.009 9 C -0.147 4.147 10 N -0.157 5.157 11 C -0.124 4.124 12 C 0.231 3.769 13 O -0.459 6.459 14 N -0.204 5.204 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.137 4.137 24 C 0.417 3.583 25 F -0.148 7.148 26 F -0.163 7.163 27 F -0.159 7.159 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.490 -7.749 -19.718 22.157 hybrid contribution -0.220 1.443 0.241 1.479 sum -6.710 -6.306 -19.477 21.544 Atomic orbital electron populations 1.21869 0.88873 1.05074 1.04969 1.22688 1.01751 1.02881 0.91526 0.84640 1.19686 0.78871 0.86742 0.83922 1.90816 1.47927 1.15724 1.84924 1.47327 1.58596 1.14534 1.10293 1.21837 0.98473 0.98892 0.86218 1.22375 0.96399 0.83207 0.98870 1.24345 0.95208 1.02673 0.92506 1.68901 1.08731 1.30495 1.07595 1.22521 0.99820 0.93504 0.96601 1.19627 0.88426 0.84282 0.84605 1.90524 1.35281 1.44210 1.75855 1.41885 1.24322 1.28498 1.25647 1.19737 1.03667 1.14361 1.04947 0.87894 1.25255 0.97986 0.95842 0.98882 1.69611 1.30314 1.18423 1.36074 0.85812 0.80394 0.78229 0.79997 1.19206 1.20759 1.20737 1.24321 1.01577 0.97764 0.90019 1.19794 0.75800 0.78138 0.84562 1.93229 1.88173 1.36796 1.96607 1.93184 1.88528 1.80876 1.53681 1.93218 1.29545 1.96409 1.96697 0.89757 0.90288 0.89501 0.92343 0.91078 0.88200 0.87320 0.89101 0.90029 0.89287 0.92069 0.77583 0.91923 0.89899 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.66 37.16 0.32 -0.52 16 2 C -0.17 -1.32 1.84 -91.77 -0.17 -1.49 16 3 H 0.14 0.72 6.74 -51.93 -0.35 0.37 16 4 C 0.52 6.00 6.56 -10.99 -0.07 5.93 16 5 O -0.52 -7.94 14.65 5.55 0.08 -7.86 16 6 N -0.58 -6.30 3.12 -173.62 -0.54 -6.85 16 7 C 0.09 1.12 9.46 59.84 0.57 1.69 16 8 C 0.10 0.83 3.78 -67.72 -0.26 0.58 16 9 C -0.02 -0.16 7.20 -7.55 -0.05 -0.21 16 10 N -0.44 -5.96 4.28 -246.10 -1.05 -7.01 16 11 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 12 C 0.45 9.91 7.85 -10.99 -0.09 9.82 16 13 O -0.58 -14.95 16.01 5.55 0.09 -14.86 16 14 N -0.57 -13.76 5.29 -10.96 -0.06 -13.82 16 15 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 16 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 19 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.01 -0.08 6.77 -7.54 -0.05 -0.13 16 24 C 0.47 4.76 2.47 37.16 0.09 4.85 16 25 F -0.17 -2.01 15.44 2.25 0.03 -1.97 16 26 F -0.18 -1.62 16.83 2.25 0.04 -1.58 16 27 F -0.18 -2.11 16.90 2.25 0.04 -2.07 16 28 H 0.08 0.34 7.86 -51.93 -0.41 -0.07 16 29 H 0.08 0.53 7.75 -51.93 -0.40 0.13 16 30 H 0.09 0.38 6.88 -51.93 -0.36 0.02 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.95 7.35 -51.93 -0.38 0.57 16 33 H 0.10 1.47 6.00 -51.93 -0.31 1.16 16 34 H 0.11 0.57 5.25 -51.93 -0.27 0.30 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.57 7.91 -51.92 -0.41 0.16 16 37 H 0.09 1.25 8.08 -51.92 -0.42 0.83 16 38 H 0.06 0.81 7.30 -51.93 -0.38 0.43 16 39 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.08 0.80 7.42 -51.93 -0.39 0.41 16 42 H 0.10 1.27 7.59 -51.93 -0.39 0.88 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -33.38 357.29 -5.41 -38.80 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.15 Total: 6.61 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 0.02 Total: 12.85 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.93 Total: -50.96 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.17 Total: -22.72 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.11 Total: -5.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.38 -5.41 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483875479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.915 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds