Wall clock time and date at job start Tue Mar 31 2020 21:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47177 * 2 1 4 4 C 1.50697 * 109.46993 * 119.99559 * 2 1 3 5 5 O 1.21286 * 119.99782 * 98.60982 * 4 2 1 6 6 N 1.34777 * 120.00536 * 278.60520 * 4 2 1 7 7 C 1.46496 * 120.00563 * 185.54943 * 6 4 2 8 8 C 1.46504 * 119.99647 * 5.56060 * 6 4 2 9 9 C 1.53503 * 114.17352 * 126.44239 * 8 6 4 10 10 N 1.47481 * 87.93234 * 87.81215 * 9 8 6 11 11 C 1.46902 * 111.00217 * 138.70239 * 10 9 8 12 12 C 1.50695 * 109.47123 * 169.99647 * 11 10 9 13 13 O 1.21290 * 120.00390 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99665 * 179.72351 * 12 11 10 15 15 C 1.37101 * 119.99483 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00408 * 359.97438 * 15 14 12 17 17 C 1.38955 * 119.99507 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99785 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47334 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47357 * 120.00017 * 19 17 15 22 22 H 1.48502 * 109.47240 * 240.00286 * 19 17 15 23 23 C 1.47478 * 87.83837 * 27.01126 * 10 9 8 24 24 C 1.53000 * 109.47233 * 239.99821 * 2 1 3 25 25 F 1.39897 * 109.46806 * 299.99726 * 24 2 1 26 26 F 1.39894 * 109.47331 * 59.99731 * 24 2 1 27 27 F 1.39902 * 109.46802 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47149 * 58.05347 * 1 2 3 29 29 H 1.08997 * 109.46637 * 178.05211 * 1 2 3 30 30 H 1.09002 * 109.47069 * 298.05162 * 1 2 3 31 31 H 1.08997 * 109.47717 * 264.70691 * 7 6 4 32 32 H 1.09004 * 109.46577 * 24.71275 * 7 6 4 33 33 H 1.09002 * 109.47139 * 144.70328 * 7 6 4 34 34 H 1.09001 * 113.25247 * 353.48795 * 8 6 4 35 35 H 1.08995 * 113.47799 * 333.04328 * 9 8 6 36 36 H 1.09008 * 113.53165 * 202.58580 * 9 8 6 37 37 H 1.09007 * 109.46874 * 49.99742 * 11 10 9 38 38 H 1.08998 * 109.47272 * 289.99971 * 11 10 9 39 39 H 0.96998 * 120.00352 * 0.02562 * 14 12 11 40 40 H 0.97000 * 120.00386 * 180.02562 * 18 17 15 41 41 H 1.09000 * 113.48012 * 87.75206 * 23 10 9 42 42 H 1.08999 * 113.47534 * 218.22885 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3827 -1.8694 1.1610 6 7 2.0923 -0.0576 2.4082 7 6 2.6928 -0.7071 3.5759 8 6 1.5567 1.3013 2.5206 9 6 0.5392 1.4841 3.6553 10 7 1.6724 1.7778 4.5522 11 6 1.3545 2.8924 5.4548 12 6 2.4240 3.0047 6.5104 13 8 3.3594 2.2326 6.5107 14 7 2.3443 3.9671 7.4507 15 6 3.3176 4.0696 8.4108 16 1 4.1480 3.3791 8.4139 17 6 3.2351 5.0614 9.3805 18 7 2.2240 5.9007 9.3777 19 14 4.5609 5.2007 10.6890 20 1 5.5815 4.1436 10.4742 21 1 5.2046 6.5360 10.6014 22 1 3.9503 5.0327 12.0322 23 6 2.4141 2.2512 3.3687 24 6 2.0400 -0.7213 -1.2492 25 9 1.5737 -2.0403 -1.2491 26 9 1.5737 -0.0619 -2.3915 27 9 3.4391 -0.7217 -1.2488 28 1 -0.3633 0.5438 -0.8720 29 1 -0.3632 -1.0271 -0.0349 30 1 -0.3633 0.4833 0.9070 31 1 1.9104 -1.1723 4.1755 32 1 3.3985 -1.4692 3.2449 33 1 3.2167 0.0368 4.1761 34 1 1.2397 1.7193 1.5651 35 1 0.0072 0.5685 3.9132 36 1 -0.1292 2.3326 3.5080 37 1 0.3912 2.7104 5.9314 38 1 1.3081 3.8200 4.8843 39 1 1.5983 4.5871 7.4482 40 1 2.1666 6.5933 10.0544 41 1 2.2467 3.3046 3.1440 42 1 3.4711 1.9855 3.3837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483875479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:09 Heat of formation + Delta-G solvation = -195.886096 kcal Electronic energy + Delta-G solvation = -30019.641369 eV Core-core repulsion = 25199.692063 eV Total energy + Delta-G solvation = -4819.949306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.13580 -48.65326 -48.57184 -42.06743 -40.53688 -39.50573 -36.07758 -35.75010 -35.02533 -33.25160 -31.23238 -28.56031 -27.51990 -27.28659 -26.85028 -25.24960 -23.93805 -21.99630 -21.06318 -20.21577 -19.92237 -19.66574 -19.33011 -18.26636 -18.16934 -17.74481 -16.90758 -16.83876 -16.62190 -16.26103 -16.17205 -15.77004 -15.49651 -15.49186 -15.25212 -15.02141 -14.82046 -14.77258 -14.70699 -14.48966 -14.30521 -14.06958 -13.67707 -13.50922 -13.41102 -13.16600 -13.02327 -12.94732 -12.88242 -12.61620 -12.41573 -12.37530 -12.21218 -12.08719 -11.89768 -11.48165 -11.05367 -10.33606 -9.97888 -9.79890 -9.63830 -8.45669 -5.93272 1.20623 1.36187 1.41649 1.48933 1.54929 1.87935 2.11069 2.29336 2.62729 2.80873 2.89314 2.98514 3.21649 3.34848 3.45491 3.46511 3.76780 3.81551 3.91901 4.18405 4.29485 4.35343 4.45304 4.51163 4.59873 4.63207 4.66250 4.66809 4.71648 4.86300 4.87716 5.05283 5.14325 5.32892 5.41862 5.44254 5.89999 6.09215 6.24999 6.63867 6.85073 7.16427 7.61370 8.18317 8.71971 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.002164 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.208060 B =12934.562333 C =13188.785635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 H 0.172 0.828 4 C 0.519 3.481 5 O -0.565 6.565 6 N -0.577 5.577 7 C 0.098 3.902 8 C 0.109 3.891 9 C -0.007 4.007 10 N -0.477 5.477 11 C 0.023 3.977 12 C 0.442 3.558 13 O -0.620 6.620 14 N -0.579 5.579 15 C -0.329 4.329 16 H 0.075 0.925 17 C -0.013 4.013 18 N -0.921 5.921 19 Si 0.988 3.012 20 H -0.276 1.276 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.012 4.012 24 C 0.465 3.535 25 F -0.183 7.183 26 F -0.172 7.172 27 F -0.193 7.193 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.109 0.891 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -4.428 -21.690 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 H 0.189 0.811 4 C 0.307 3.693 5 O -0.444 6.444 6 N -0.306 5.306 7 C -0.044 4.044 8 C 0.004 3.996 9 C -0.136 4.136 10 N -0.200 5.200 11 C -0.109 4.109 12 C 0.229 3.771 13 O -0.505 6.505 14 N -0.217 5.217 15 C -0.459 4.459 16 H 0.093 0.907 17 C -0.212 4.212 18 N -0.562 5.562 19 Si 0.812 3.188 20 H -0.201 1.201 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.142 4.142 24 C 0.410 3.590 25 F -0.164 7.164 26 F -0.154 7.154 27 F -0.174 7.174 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.175 0.825 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.554 -5.933 -21.127 23.553 hybrid contribution 0.433 0.826 0.626 1.123 sum -8.122 -5.107 -20.502 22.636 Atomic orbital electron populations 1.21980 0.86538 1.04923 1.07180 1.22783 1.03412 1.03466 0.88076 0.81109 1.20306 0.77888 0.86337 0.84789 1.90798 1.49933 1.17998 1.85654 1.47393 1.58193 1.15512 1.09548 1.21529 0.98041 0.98013 0.86863 1.22559 0.94979 0.81156 1.00858 1.24432 0.94473 1.03933 0.90779 1.68865 1.11706 1.30252 1.09133 1.22388 0.97313 0.95870 0.95280 1.20947 0.89086 0.82271 0.84764 1.90497 1.37613 1.45462 1.76954 1.41967 1.24107 1.29555 1.26039 1.19626 1.04321 1.14910 1.07009 0.90744 1.25948 0.99878 0.95174 1.00210 1.69658 1.31189 1.18617 1.36736 0.84944 0.77869 0.78197 0.77790 1.20082 1.19570 1.19735 1.24414 1.00084 0.99783 0.89911 1.20177 0.75162 0.77822 0.85792 1.93198 1.88260 1.38220 1.96746 1.93199 1.88290 1.80494 1.53383 1.93188 1.30945 1.96445 1.96834 0.87331 0.91788 0.87391 0.92677 0.92412 0.90298 0.82477 0.89405 0.86201 0.87458 0.88978 0.76998 0.91391 0.87362 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.66 71.98 0.62 -0.43 16 2 C -0.16 -1.99 1.84 -11.54 -0.02 -2.01 16 3 H 0.17 0.95 6.74 -2.39 -0.02 0.93 16 4 C 0.52 11.22 6.56 87.66 0.57 11.80 16 5 O -0.57 -17.52 14.65 -3.05 -0.04 -17.57 16 6 N -0.58 -11.76 3.12 -821.60 -2.56 -14.33 16 7 C 0.10 2.61 9.46 127.77 1.21 3.82 16 8 C 0.11 1.46 3.78 45.45 0.17 1.63 16 9 C -0.01 -0.10 7.20 83.57 0.60 0.50 16 10 N -0.48 -12.13 4.28 -932.52 -4.00 -16.13 16 11 C 0.02 0.66 5.30 85.56 0.45 1.11 16 12 C 0.44 19.75 7.85 87.65 0.69 20.44 16 13 O -0.62 -33.30 16.01 -3.06 -0.05 -33.35 16 14 N -0.58 -28.43 5.29 -306.98 -1.62 -30.06 16 15 C -0.33 -18.34 9.68 84.04 0.81 -17.52 16 16 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 17 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 18 N -0.92 -48.57 13.05 21.66 0.28 -48.28 16 19 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 C -0.01 -0.25 6.77 83.58 0.57 0.32 16 24 C 0.46 8.63 2.47 71.98 0.18 8.80 16 25 F -0.18 -4.32 15.44 44.97 0.69 -3.63 16 26 F -0.17 -2.65 16.83 44.97 0.76 -1.90 16 27 F -0.19 -4.46 16.90 44.97 0.76 -3.70 16 28 H 0.11 0.31 7.86 -2.39 -0.02 0.29 16 29 H 0.06 0.69 7.75 -2.39 -0.02 0.68 16 30 H 0.11 0.34 6.88 -2.39 -0.02 0.32 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.66 7.35 -2.38 -0.02 1.64 16 33 H 0.08 2.46 6.00 -2.39 -0.01 2.44 16 34 H 0.16 0.64 5.25 -2.39 -0.01 0.63 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 0.90 7.91 -2.38 -0.02 0.88 16 37 H 0.11 2.68 8.08 -2.38 -0.02 2.67 16 38 H 0.09 2.07 7.30 -2.39 -0.02 2.06 16 39 H 0.40 18.27 7.90 -92.71 -0.73 17.54 16 40 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.11 1.64 7.42 -2.39 -0.02 1.62 16 42 H 0.06 1.71 7.59 -2.39 -0.02 1.69 16 Total: -1.00 -77.86 357.29 2.92 -74.94 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.35 Total: 21.16 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 6.32 Total: 28.27 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -7.90 Total: -108.79 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.92 kcal Atomic # 9 Polarization: -11.44 SS G_CDS: 2.21 Total: -9.23 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -77.86 2.92 -74.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483875479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.948 kcal (2) G-P(sol) polarization free energy of solvation -77.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds