Wall clock time and date at job start Tue Mar 31 2020 21:46:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08996 * 109.47177 * 2 1
4 4 C 1.50697 * 109.46993 * 119.99559 * 2 1 3
5 5 O 1.21286 * 119.99782 * 98.60982 * 4 2 1
6 6 N 1.34777 * 120.00536 * 278.60520 * 4 2 1
7 7 C 1.46496 * 120.00563 * 185.54943 * 6 4 2
8 8 C 1.46504 * 119.99647 * 5.56060 * 6 4 2
9 9 C 1.53503 * 114.17352 * 126.44239 * 8 6 4
10 10 N 1.47481 * 87.93234 * 87.81215 * 9 8 6
11 11 C 1.46902 * 111.00217 * 138.70239 * 10 9 8
12 12 C 1.50695 * 109.47123 * 169.99647 * 11 10 9
13 13 O 1.21290 * 120.00390 * 0.02562 * 12 11 10
14 14 N 1.34783 * 119.99665 * 179.72351 * 12 11 10
15 15 C 1.37101 * 119.99483 * 180.02562 * 14 12 11
16 16 H 1.07996 * 120.00408 * 359.97438 * 15 14 12
17 17 C 1.38955 * 119.99507 * 180.02562 * 15 14 12
18 18 N 1.31409 * 120.00327 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 119.99785 * 179.97438 * 17 15 14
20 20 H 1.48502 * 109.47334 * 359.97438 * 19 17 15
21 21 H 1.48497 * 109.47357 * 120.00017 * 19 17 15
22 22 H 1.48502 * 109.47240 * 240.00286 * 19 17 15
23 23 C 1.47478 * 87.83837 * 27.01126 * 10 9 8
24 24 C 1.53000 * 109.47233 * 239.99821 * 2 1 3
25 25 F 1.39897 * 109.46806 * 299.99726 * 24 2 1
26 26 F 1.39894 * 109.47331 * 59.99731 * 24 2 1
27 27 F 1.39902 * 109.46802 * 180.02562 * 24 2 1
28 28 H 1.09000 * 109.47149 * 58.05347 * 1 2 3
29 29 H 1.08997 * 109.46637 * 178.05211 * 1 2 3
30 30 H 1.09002 * 109.47069 * 298.05162 * 1 2 3
31 31 H 1.08997 * 109.47717 * 264.70691 * 7 6 4
32 32 H 1.09004 * 109.46577 * 24.71275 * 7 6 4
33 33 H 1.09002 * 109.47139 * 144.70328 * 7 6 4
34 34 H 1.09001 * 113.25247 * 353.48795 * 8 6 4
35 35 H 1.08995 * 113.47799 * 333.04328 * 9 8 6
36 36 H 1.09008 * 113.53165 * 202.58580 * 9 8 6
37 37 H 1.09007 * 109.46874 * 49.99742 * 11 10 9
38 38 H 1.08998 * 109.47272 * 289.99971 * 11 10 9
39 39 H 0.96998 * 120.00352 * 0.02562 * 14 12 11
40 40 H 0.97000 * 120.00386 * 180.02562 * 18 17 15
41 41 H 1.09000 * 113.48012 * 87.75206 * 23 10 9
42 42 H 1.08999 * 113.47534 * 218.22885 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7103 1.2305
5 8 2.3827 -1.8694 1.1610
6 7 2.0923 -0.0576 2.4082
7 6 2.6928 -0.7071 3.5759
8 6 1.5567 1.3013 2.5206
9 6 0.5392 1.4841 3.6553
10 7 1.6724 1.7778 4.5522
11 6 1.3545 2.8924 5.4548
12 6 2.4240 3.0047 6.5104
13 8 3.3594 2.2326 6.5107
14 7 2.3443 3.9671 7.4507
15 6 3.3176 4.0696 8.4108
16 1 4.1480 3.3791 8.4139
17 6 3.2351 5.0614 9.3805
18 7 2.2240 5.9007 9.3777
19 14 4.5609 5.2007 10.6890
20 1 5.5815 4.1436 10.4742
21 1 5.2046 6.5360 10.6014
22 1 3.9503 5.0327 12.0322
23 6 2.4141 2.2512 3.3687
24 6 2.0400 -0.7213 -1.2492
25 9 1.5737 -2.0403 -1.2491
26 9 1.5737 -0.0619 -2.3915
27 9 3.4391 -0.7217 -1.2488
28 1 -0.3633 0.5438 -0.8720
29 1 -0.3632 -1.0271 -0.0349
30 1 -0.3633 0.4833 0.9070
31 1 1.9104 -1.1723 4.1755
32 1 3.3985 -1.4692 3.2449
33 1 3.2167 0.0368 4.1761
34 1 1.2397 1.7193 1.5651
35 1 0.0072 0.5685 3.9132
36 1 -0.1292 2.3326 3.5080
37 1 0.3912 2.7104 5.9314
38 1 1.3081 3.8200 4.8843
39 1 1.5983 4.5871 7.4482
40 1 2.1666 6.5933 10.0544
41 1 2.2467 3.3046 3.1440
42 1 3.4711 1.9855 3.3837
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001483875479.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:46:09
Heat of formation + Delta-G solvation = -195.886096 kcal
Electronic energy + Delta-G solvation = -30019.641369 eV
Core-core repulsion = 25199.692063 eV
Total energy + Delta-G solvation = -4819.949306 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 337.140 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-51.13580 -48.65326 -48.57184 -42.06743 -40.53688 -39.50573 -36.07758 -35.75010
-35.02533 -33.25160 -31.23238 -28.56031 -27.51990 -27.28659 -26.85028 -25.24960
-23.93805 -21.99630 -21.06318 -20.21577 -19.92237 -19.66574 -19.33011 -18.26636
-18.16934 -17.74481 -16.90758 -16.83876 -16.62190 -16.26103 -16.17205 -15.77004
-15.49651 -15.49186 -15.25212 -15.02141 -14.82046 -14.77258 -14.70699 -14.48966
-14.30521 -14.06958 -13.67707 -13.50922 -13.41102 -13.16600 -13.02327 -12.94732
-12.88242 -12.61620 -12.41573 -12.37530 -12.21218 -12.08719 -11.89768 -11.48165
-11.05367 -10.33606 -9.97888 -9.79890 -9.63830 -8.45669 -5.93272 1.20623
1.36187 1.41649 1.48933 1.54929 1.87935 2.11069 2.29336 2.62729
2.80873 2.89314 2.98514 3.21649 3.34848 3.45491 3.46511 3.76780
3.81551 3.91901 4.18405 4.29485 4.35343 4.45304 4.51163 4.59873
4.63207 4.66250 4.66809 4.71648 4.86300 4.87716 5.05283 5.14325
5.32892 5.41862 5.44254 5.89999 6.09215 6.24999 6.63867 6.85073
7.16427 7.61370 8.18317 8.71971
Molecular weight = 337.14amu
Principal moments of inertia in cm(-1)
A = 0.030925 B = 0.002164 C = 0.002123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 905.208060 B =12934.562333 C =13188.785635
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.155 4.155
3 H 0.172 0.828
4 C 0.519 3.481
5 O -0.565 6.565
6 N -0.577 5.577
7 C 0.098 3.902
8 C 0.109 3.891
9 C -0.007 4.007
10 N -0.477 5.477
11 C 0.023 3.977
12 C 0.442 3.558
13 O -0.620 6.620
14 N -0.579 5.579
15 C -0.329 4.329
16 H 0.075 0.925
17 C -0.013 4.013
18 N -0.921 5.921
19 Si 0.988 3.012
20 H -0.276 1.276
21 H -0.270 1.270
22 H -0.272 1.272
23 C -0.012 4.012
24 C 0.465 3.535
25 F -0.183 7.183
26 F -0.172 7.172
27 F -0.193 7.193
28 H 0.108 0.892
29 H 0.063 0.937
30 H 0.107 0.893
31 H 0.055 0.945
32 H 0.057 0.943
33 H 0.078 0.922
34 H 0.158 0.842
35 H 0.088 0.912
36 H 0.120 0.880
37 H 0.107 0.893
38 H 0.092 0.908
39 H 0.396 0.604
40 H 0.277 0.723
41 H 0.109 0.891
42 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.613 -4.428 -21.690 24.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.177 4.177
3 H 0.189 0.811
4 C 0.307 3.693
5 O -0.444 6.444
6 N -0.306 5.306
7 C -0.044 4.044
8 C 0.004 3.996
9 C -0.136 4.136
10 N -0.200 5.200
11 C -0.109 4.109
12 C 0.229 3.771
13 O -0.505 6.505
14 N -0.217 5.217
15 C -0.459 4.459
16 H 0.093 0.907
17 C -0.212 4.212
18 N -0.562 5.562
19 Si 0.812 3.188
20 H -0.201 1.201
21 H -0.196 1.196
22 H -0.197 1.197
23 C -0.142 4.142
24 C 0.410 3.590
25 F -0.164 7.164
26 F -0.154 7.154
27 F -0.174 7.174
28 H 0.127 0.873
29 H 0.082 0.918
30 H 0.126 0.874
31 H 0.073 0.927
32 H 0.076 0.924
33 H 0.097 0.903
34 H 0.175 0.825
35 H 0.106 0.894
36 H 0.138 0.862
37 H 0.125 0.875
38 H 0.110 0.890
39 H 0.230 0.770
40 H 0.086 0.914
41 H 0.126 0.874
42 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -8.554 -5.933 -21.127 23.553
hybrid contribution 0.433 0.826 0.626 1.123
sum -8.122 -5.107 -20.502 22.636
Atomic orbital electron populations
1.21980 0.86538 1.04923 1.07180 1.22783 1.03412 1.03466 0.88076
0.81109 1.20306 0.77888 0.86337 0.84789 1.90798 1.49933 1.17998
1.85654 1.47393 1.58193 1.15512 1.09548 1.21529 0.98041 0.98013
0.86863 1.22559 0.94979 0.81156 1.00858 1.24432 0.94473 1.03933
0.90779 1.68865 1.11706 1.30252 1.09133 1.22388 0.97313 0.95870
0.95280 1.20947 0.89086 0.82271 0.84764 1.90497 1.37613 1.45462
1.76954 1.41967 1.24107 1.29555 1.26039 1.19626 1.04321 1.14910
1.07009 0.90744 1.25948 0.99878 0.95174 1.00210 1.69658 1.31189
1.18617 1.36736 0.84944 0.77869 0.78197 0.77790 1.20082 1.19570
1.19735 1.24414 1.00084 0.99783 0.89911 1.20177 0.75162 0.77822
0.85792 1.93198 1.88260 1.38220 1.96746 1.93199 1.88290 1.80494
1.53383 1.93188 1.30945 1.96445 1.96834 0.87331 0.91788 0.87391
0.92677 0.92412 0.90298 0.82477 0.89405 0.86201 0.87458 0.88978
0.76998 0.91391 0.87362 0.91779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.05 8.66 71.98 0.62 -0.43 16
2 C -0.16 -1.99 1.84 -11.54 -0.02 -2.01 16
3 H 0.17 0.95 6.74 -2.39 -0.02 0.93 16
4 C 0.52 11.22 6.56 87.66 0.57 11.80 16
5 O -0.57 -17.52 14.65 -3.05 -0.04 -17.57 16
6 N -0.58 -11.76 3.12 -821.60 -2.56 -14.33 16
7 C 0.10 2.61 9.46 127.77 1.21 3.82 16
8 C 0.11 1.46 3.78 45.45 0.17 1.63 16
9 C -0.01 -0.10 7.20 83.57 0.60 0.50 16
10 N -0.48 -12.13 4.28 -932.52 -4.00 -16.13 16
11 C 0.02 0.66 5.30 85.56 0.45 1.11 16
12 C 0.44 19.75 7.85 87.65 0.69 20.44 16
13 O -0.62 -33.30 16.01 -3.06 -0.05 -33.35 16
14 N -0.58 -28.43 5.29 -306.98 -1.62 -30.06 16
15 C -0.33 -18.34 9.68 84.04 0.81 -17.52 16
16 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16
17 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16
18 N -0.92 -48.57 13.05 21.66 0.28 -48.28 16
19 Si 0.99 42.54 29.55 68.60 2.03 44.57 16
20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16
21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16
22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16
23 C -0.01 -0.25 6.77 83.58 0.57 0.32 16
24 C 0.46 8.63 2.47 71.98 0.18 8.80 16
25 F -0.18 -4.32 15.44 44.97 0.69 -3.63 16
26 F -0.17 -2.65 16.83 44.97 0.76 -1.90 16
27 F -0.19 -4.46 16.90 44.97 0.76 -3.70 16
28 H 0.11 0.31 7.86 -2.39 -0.02 0.29 16
29 H 0.06 0.69 7.75 -2.39 -0.02 0.68 16
30 H 0.11 0.34 6.88 -2.39 -0.02 0.32 16
31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
32 H 0.06 1.66 7.35 -2.38 -0.02 1.64 16
33 H 0.08 2.46 6.00 -2.39 -0.01 2.44 16
34 H 0.16 0.64 5.25 -2.39 -0.01 0.63 16
35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
36 H 0.12 0.90 7.91 -2.38 -0.02 0.88 16
37 H 0.11 2.68 8.08 -2.38 -0.02 2.67 16
38 H 0.09 2.07 7.30 -2.39 -0.02 2.06 16
39 H 0.40 18.27 7.90 -92.71 -0.73 17.54 16
40 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16
41 H 0.11 1.64 7.42 -2.39 -0.02 1.62 16
42 H 0.06 1.71 7.59 -2.39 -0.02 1.69 16
Total: -1.00 -77.86 357.29 2.92 -74.94
By element:
Atomic # 1 Polarization: 20.81 SS G_CDS: 0.35 Total: 21.16 kcal
Atomic # 6 Polarization: 21.94 SS G_CDS: 6.32 Total: 28.27 kcal
Atomic # 7 Polarization: -100.89 SS G_CDS: -7.90 Total: -108.79 kcal
Atomic # 8 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.92 kcal
Atomic # 9 Polarization: -11.44 SS G_CDS: 2.21 Total: -9.23 kcal
Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal
Total: -77.86 2.92 -74.94 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483875479.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -120.948 kcal
(2) G-P(sol) polarization free energy of solvation -77.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) -195.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds