Wall clock time and date at job start Tue Mar 31 2020 20:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.99829 * 2 1 4 4 C 1.54341 * 109.99190 * 238.95973 * 2 1 3 5 5 C 1.55146 * 103.02120 * 218.66742 * 4 2 1 6 6 H 1.09001 * 111.03773 * 277.21636 * 5 4 2 7 7 N 1.46904 * 111.00519 * 153.37998 * 5 4 2 8 8 C 1.46906 * 110.99979 * 161.34897 * 7 5 4 9 9 C 1.50701 * 109.46903 * 180.02562 * 8 7 5 10 10 O 1.21298 * 119.99886 * 0.02562 * 9 8 7 11 11 N 1.34768 * 119.99981 * 179.97438 * 9 8 7 12 12 C 1.37098 * 120.00274 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99836 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00187 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00233 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47172 * 89.99743 * 16 14 12 18 18 H 1.48495 * 109.47117 * 209.99374 * 16 14 12 19 19 H 1.48497 * 109.47484 * 329.99821 * 16 14 12 20 20 C 1.54904 * 101.58424 * 35.30529 * 5 4 2 21 21 N 1.47019 * 109.88214 * 121.09590 * 2 1 3 22 22 C 1.34777 * 125.64846 * 298.39293 * 21 2 1 23 23 O 1.21288 * 119.99593 * 359.71594 * 22 21 2 24 24 C 1.50697 * 120.00369 * 179.71752 * 22 21 2 25 25 C 1.52997 * 109.47466 * 180.02562 * 24 22 21 26 26 F 1.39905 * 109.47157 * 59.99756 * 25 24 22 27 27 F 1.39900 * 109.47010 * 300.00147 * 25 24 22 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 24 22 29 29 H 1.09000 * 109.47225 * 300.36151 * 1 2 3 30 30 H 1.09003 * 109.46964 * 60.35986 * 1 2 3 31 31 H 1.08994 * 109.47794 * 180.35877 * 1 2 3 32 32 H 1.09005 * 110.84583 * 100.19583 * 4 2 1 33 33 H 1.08997 * 110.66352 * 337.05493 * 4 2 1 34 34 H 1.00894 * 110.99643 * 285.30498 * 7 5 4 35 35 H 1.09001 * 109.46923 * 300.00069 * 8 7 5 36 36 H 1.08995 * 109.46881 * 60.00379 * 8 7 5 37 37 H 0.97004 * 119.99979 * 0.02562 * 11 9 8 38 38 H 0.96995 * 120.00662 * 180.02562 * 15 14 12 39 39 H 1.08995 * 110.37229 * 204.14773 * 20 5 4 40 40 H 1.09007 * 110.36559 * 81.82637 * 20 5 4 41 41 H 1.09002 * 109.47120 * 59.99760 * 24 22 21 42 42 H 1.09001 * 109.46613 * 300.00111 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7479 -1.2427 5 6 3.2862 -1.5184 -0.6915 6 1 4.1673 -0.8775 -0.6579 7 7 3.5481 -2.7277 -1.4834 8 6 4.9185 -3.2113 -1.2683 9 6 5.1498 -4.4495 -2.0956 10 8 4.2607 -4.8859 -2.7958 11 7 6.3449 -5.0714 -2.0581 12 6 6.5555 -6.1976 -2.8111 13 1 5.7636 -6.5866 -3.4340 14 6 7.7875 -6.8390 -2.7721 15 7 8.7509 -6.3660 -2.0139 16 14 8.0742 -8.3739 -3.7975 17 1 8.5971 -7.9868 -5.1325 18 1 9.0606 -9.2485 -3.1142 19 1 6.7929 -9.1064 -3.9612 20 6 2.8098 -1.8825 0.7368 21 7 2.0299 -0.7141 1.1839 22 6 1.8073 -0.3620 2.4657 23 8 1.1474 0.6239 2.7179 24 6 2.3783 -1.1933 3.5855 25 6 1.9803 -0.5805 4.9297 26 9 0.5855 -0.5519 5.0345 27 9 2.4811 0.7231 5.0145 28 9 2.5099 -1.3525 5.9693 29 1 -0.3634 0.5194 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3634 -1.0275 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3065 -1.4405 -1.6225 34 1 2.8735 -3.4487 -1.2762 35 1 5.6274 -2.4384 -1.5656 36 1 5.0592 -3.4471 -0.2135 37 1 7.0560 -4.7222 -1.4984 38 1 9.6110 -6.8135 -1.9869 39 1 3.6654 -2.0412 1.3932 40 1 2.1800 -2.7718 0.7115 41 1 3.4650 -1.2159 3.5036 42 1 1.9877 -2.2088 3.5196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486110230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:35 Heat of formation + Delta-G solvation = -222.053223 kcal Electronic energy + Delta-G solvation = -29333.900255 eV Core-core repulsion = 24512.816258 eV Total energy + Delta-G solvation = -4821.083998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.35562 -47.89333 -47.77328 -40.70801 -38.64348 -37.91231 -34.99624 -33.89150 -33.14591 -31.33380 -31.18123 -30.15075 -26.48039 -26.12616 -24.78370 -24.05383 -22.23555 -21.17458 -19.71707 -19.38231 -18.85965 -18.80206 -18.02372 -17.72759 -17.20744 -16.66254 -16.24122 -15.71783 -15.16899 -14.93696 -14.67293 -14.62621 -14.54498 -14.35499 -14.21176 -13.96207 -13.94516 -13.88870 -13.79384 -13.53183 -13.33824 -13.05025 -12.82460 -12.58765 -12.47551 -12.30627 -12.18609 -11.83890 -11.59147 -11.53671 -11.18987 -11.09807 -10.94041 -10.45020 -10.36972 -10.28851 -9.58580 -9.11418 -8.61168 -8.25466 -8.04682 -6.49233 -3.90368 2.06786 2.09426 2.60184 3.12757 3.22329 3.27505 3.35238 3.52962 3.68045 3.80679 3.91801 4.12988 4.19462 4.32441 4.44711 4.58282 4.64750 4.74856 4.79125 4.94892 5.03413 5.07434 5.16702 5.22516 5.34750 5.40736 5.61488 5.67183 5.74650 5.83022 5.85751 5.98313 6.07339 6.15669 6.96287 7.01680 7.41599 7.48282 7.59854 7.97900 8.52215 9.10097 9.45323 9.96035 10.68286 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002264 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.729439 B =12364.389223 C =13708.731186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.080 0.920 4 C -0.117 4.117 5 C 0.080 3.920 6 H 0.097 0.903 7 N -0.651 5.651 8 C 0.048 3.952 9 C 0.438 3.562 10 O -0.583 6.583 11 N -0.561 5.561 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.024 3.976 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.059 3.941 21 N -0.605 5.605 22 C 0.535 3.465 23 O -0.520 6.520 24 C -0.195 4.195 25 C 0.473 3.527 26 F -0.174 7.174 27 F -0.173 7.173 28 F -0.182 7.182 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.353 0.647 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 12.353 11.480 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.032 4.032 6 H 0.115 0.885 7 N -0.282 5.282 8 C -0.084 4.084 9 C 0.223 3.777 10 O -0.468 6.468 11 N -0.198 5.198 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.178 4.178 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.066 4.066 21 N -0.339 5.339 22 C 0.321 3.679 23 O -0.396 6.396 24 C -0.236 4.236 25 C 0.419 3.581 26 F -0.155 7.155 27 F -0.154 7.154 28 F -0.163 7.163 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.157 0.843 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.503 12.876 10.692 20.308 hybrid contribution 0.752 -1.032 1.022 1.636 sum -10.751 11.843 11.714 19.826 Atomic orbital electron populations 1.22139 0.94350 1.02516 1.03099 1.21694 0.94925 0.96500 0.83606 0.90186 1.22769 0.97495 0.99478 0.95825 1.22807 0.98469 0.93709 0.88264 0.88460 1.60121 1.03957 1.07582 1.56579 1.21754 0.90941 0.97711 0.98023 1.19747 0.84252 0.86521 0.87137 1.90538 1.43762 1.67805 1.44676 1.41861 1.11674 1.25244 1.41004 1.19702 0.98833 1.02299 1.22204 0.87876 1.25266 0.95240 0.99657 0.97673 1.69599 1.04332 1.41137 1.39118 0.85857 0.78341 0.80742 0.79361 1.20335 1.20906 1.19389 1.23436 0.95521 0.88875 0.98784 1.48367 1.52474 1.28472 1.04633 1.19353 0.80945 0.85212 0.82367 1.90817 1.39248 1.26687 1.82878 1.22984 1.06958 1.03304 0.90346 1.19681 0.75360 0.76728 0.86355 1.93226 1.29387 1.96287 1.96591 1.93226 1.87127 1.38411 1.96684 1.93212 1.86390 1.75198 1.61508 0.91271 0.91304 0.92347 0.89216 0.89540 0.82579 0.89324 0.93668 0.77450 0.91788 0.90239 0.90486 0.84330 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.11 37.15 0.34 -1.10 16 2 C 0.14 1.19 3.46 -66.95 -0.23 0.96 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -1.00 6.18 -24.89 -0.15 -1.15 16 5 C 0.08 0.74 3.32 -65.57 -0.22 0.52 16 6 H 0.10 0.88 7.92 -51.93 -0.41 0.46 16 7 N -0.65 -8.52 6.00 -105.73 -0.63 -9.15 16 8 C 0.05 0.72 6.04 -4.97 -0.03 0.69 16 9 C 0.44 9.49 7.82 -10.99 -0.09 9.40 16 10 O -0.58 -14.83 15.78 5.54 0.09 -14.75 16 11 N -0.56 -13.36 5.29 -10.96 -0.06 -13.42 16 12 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 13 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 16 Si 0.93 20.35 29.55 -169.99 -5.02 15.32 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.06 0.46 6.27 -2.53 -0.02 0.44 16 21 N -0.60 -5.39 3.06 -163.01 -0.50 -5.89 16 22 C 0.53 5.41 7.41 -10.99 -0.08 5.32 16 23 O -0.52 -7.07 13.88 5.55 0.08 -7.00 16 24 C -0.20 -1.38 4.76 -27.89 -0.13 -1.51 16 25 C 0.47 4.51 2.89 37.16 0.11 4.62 16 26 F -0.17 -1.97 16.40 2.25 0.04 -1.93 16 27 F -0.17 -1.97 16.40 2.25 0.04 -1.93 16 28 F -0.18 -1.66 17.32 2.25 0.04 -1.62 16 29 H 0.07 0.74 6.89 -51.93 -0.36 0.38 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 34 H 0.35 4.78 8.01 -39.29 -0.31 4.46 16 35 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.39 8.87 7.90 -40.82 -0.32 8.55 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.08 0.50 7.48 -51.93 -0.39 0.11 16 40 H 0.08 0.58 7.80 -51.92 -0.41 0.18 16 41 H 0.14 0.65 7.85 -51.93 -0.41 0.24 16 42 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -32.37 364.58 -5.94 -38.32 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.48 Total: 8.91 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -0.74 Total: 10.52 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.47 Total: -51.33 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.16 Total: -21.74 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.11 Total: -5.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.37 -5.94 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486110230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.738 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds