Wall clock time and date at job start Tue Mar 31 2020 20:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.99829 * 2 1 4 4 C 1.54341 * 109.99190 * 238.95973 * 2 1 3 5 5 C 1.55146 * 103.02120 * 218.66742 * 4 2 1 6 6 H 1.09001 * 111.03773 * 277.21636 * 5 4 2 7 7 N 1.46904 * 111.00519 * 153.37998 * 5 4 2 8 8 C 1.46906 * 110.99979 * 161.34897 * 7 5 4 9 9 C 1.50701 * 109.46903 * 180.02562 * 8 7 5 10 10 O 1.21298 * 119.99886 * 0.02562 * 9 8 7 11 11 N 1.34768 * 119.99981 * 179.97438 * 9 8 7 12 12 C 1.37098 * 120.00274 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99836 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00187 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00233 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47172 * 89.99743 * 16 14 12 18 18 H 1.48495 * 109.47117 * 209.99374 * 16 14 12 19 19 H 1.48497 * 109.47484 * 329.99821 * 16 14 12 20 20 C 1.54904 * 101.58424 * 35.30529 * 5 4 2 21 21 N 1.47019 * 109.88214 * 121.09590 * 2 1 3 22 22 C 1.34777 * 125.64846 * 298.39293 * 21 2 1 23 23 O 1.21288 * 119.99593 * 359.71594 * 22 21 2 24 24 C 1.50697 * 120.00369 * 179.71752 * 22 21 2 25 25 C 1.52997 * 109.47466 * 180.02562 * 24 22 21 26 26 F 1.39905 * 109.47157 * 59.99756 * 25 24 22 27 27 F 1.39900 * 109.47010 * 300.00147 * 25 24 22 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 24 22 29 29 H 1.09000 * 109.47225 * 300.36151 * 1 2 3 30 30 H 1.09003 * 109.46964 * 60.35986 * 1 2 3 31 31 H 1.08994 * 109.47794 * 180.35877 * 1 2 3 32 32 H 1.09005 * 110.84583 * 100.19583 * 4 2 1 33 33 H 1.08997 * 110.66352 * 337.05493 * 4 2 1 34 34 H 1.00894 * 110.99643 * 285.30498 * 7 5 4 35 35 H 1.09001 * 109.46923 * 300.00069 * 8 7 5 36 36 H 1.08995 * 109.46881 * 60.00379 * 8 7 5 37 37 H 0.97004 * 119.99979 * 0.02562 * 11 9 8 38 38 H 0.96995 * 120.00662 * 180.02562 * 15 14 12 39 39 H 1.08995 * 110.37229 * 204.14773 * 20 5 4 40 40 H 1.09007 * 110.36559 * 81.82637 * 20 5 4 41 41 H 1.09002 * 109.47120 * 59.99760 * 24 22 21 42 42 H 1.09001 * 109.46613 * 300.00111 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7479 -1.2427 5 6 3.2862 -1.5184 -0.6915 6 1 4.1673 -0.8775 -0.6579 7 7 3.5481 -2.7277 -1.4834 8 6 4.9185 -3.2113 -1.2683 9 6 5.1498 -4.4495 -2.0956 10 8 4.2607 -4.8859 -2.7958 11 7 6.3449 -5.0714 -2.0581 12 6 6.5555 -6.1976 -2.8111 13 1 5.7636 -6.5866 -3.4340 14 6 7.7875 -6.8390 -2.7721 15 7 8.7509 -6.3660 -2.0139 16 14 8.0742 -8.3739 -3.7975 17 1 8.5971 -7.9868 -5.1325 18 1 9.0606 -9.2485 -3.1142 19 1 6.7929 -9.1064 -3.9612 20 6 2.8098 -1.8825 0.7368 21 7 2.0299 -0.7141 1.1839 22 6 1.8073 -0.3620 2.4657 23 8 1.1474 0.6239 2.7179 24 6 2.3783 -1.1933 3.5855 25 6 1.9803 -0.5805 4.9297 26 9 0.5855 -0.5519 5.0345 27 9 2.4811 0.7231 5.0145 28 9 2.5099 -1.3525 5.9693 29 1 -0.3634 0.5194 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3634 -1.0275 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3065 -1.4405 -1.6225 34 1 2.8735 -3.4487 -1.2762 35 1 5.6274 -2.4384 -1.5656 36 1 5.0592 -3.4471 -0.2135 37 1 7.0560 -4.7222 -1.4984 38 1 9.6110 -6.8135 -1.9869 39 1 3.6654 -2.0412 1.3932 40 1 2.1800 -2.7718 0.7115 41 1 3.4650 -1.2159 3.5036 42 1 1.9877 -2.2088 3.5196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486110230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:34 Heat of formation + Delta-G solvation = -245.584491 kcal Electronic energy + Delta-G solvation = -29334.920648 eV Core-core repulsion = 24512.816258 eV Total energy + Delta-G solvation = -4822.104390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.11314 -48.63540 -48.58077 -41.45297 -40.11390 -38.97022 -36.23195 -35.57496 -33.84003 -33.22716 -31.83773 -31.10511 -27.90639 -26.83145 -25.86265 -25.29769 -22.99797 -21.93176 -21.05864 -20.40503 -19.88444 -19.60493 -19.53434 -18.50180 -17.98416 -17.69699 -17.38255 -16.82300 -16.38036 -16.10823 -15.96889 -15.62761 -15.43717 -15.31600 -15.20739 -14.99504 -14.96931 -14.75777 -14.71327 -14.30263 -14.21087 -14.06504 -13.69555 -13.53840 -13.45555 -13.35913 -13.17016 -13.05445 -12.88473 -12.77986 -12.38930 -12.32340 -12.11110 -11.92606 -11.66845 -11.47203 -11.16194 -10.29838 -9.97469 -9.83806 -9.30241 -8.43900 -5.91728 1.35273 1.40028 1.41590 1.44737 1.56234 1.91531 2.10801 2.31303 2.67537 2.78669 3.01457 3.03420 3.24498 3.41618 3.51092 3.71106 3.78758 3.98384 4.08949 4.13526 4.18645 4.24788 4.37623 4.41751 4.50027 4.62654 4.65262 4.69060 4.78872 4.96726 5.06200 5.14536 5.28455 5.35663 5.44640 5.92264 6.12836 6.28543 6.42002 6.64142 6.87348 7.16942 7.61683 8.16999 8.73258 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002264 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.729439 B =12364.389223 C =13708.731186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.077 0.923 4 C -0.110 4.110 5 C 0.082 3.918 6 H 0.107 0.893 7 N -0.665 5.665 8 C 0.064 3.936 9 C 0.437 3.563 10 O -0.625 6.625 11 N -0.574 5.574 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.988 3.012 17 H -0.273 1.273 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.061 3.939 21 N -0.602 5.602 22 C 0.529 3.471 23 O -0.563 6.563 24 C -0.186 4.186 25 C 0.468 3.532 26 F -0.189 7.189 27 F -0.188 7.188 28 F -0.179 7.179 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.350 0.650 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.170 0.830 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 12.131 11.891 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.029 4.029 6 H 0.125 0.875 7 N -0.297 5.297 8 C -0.068 4.068 9 C 0.225 3.775 10 O -0.511 6.511 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.812 3.188 17 H -0.199 1.199 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.063 4.063 21 N -0.335 5.335 22 C 0.317 3.683 23 O -0.442 6.442 24 C -0.226 4.226 25 C 0.413 3.587 26 F -0.170 7.170 27 F -0.169 7.169 28 F -0.161 7.161 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.170 0.830 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.187 0.813 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.718 12.663 11.112 19.967 hybrid contribution 0.433 -0.903 0.888 1.339 sum -10.286 11.759 12.000 19.699 Atomic orbital electron populations 1.22074 0.94544 1.02283 1.02632 1.21689 0.94775 0.96489 0.83833 0.90539 1.22700 0.97100 0.99323 0.95713 1.22811 0.99133 0.92164 0.88828 0.87465 1.60074 1.02854 1.08440 1.58297 1.21614 0.92477 0.94503 0.98235 1.20967 0.82699 0.87523 0.86324 1.90511 1.44862 1.69359 1.46390 1.41933 1.12758 1.25117 1.41323 1.19631 0.98862 1.04163 1.23440 0.90397 1.25956 0.94691 1.01989 0.98484 1.69650 1.04591 1.42088 1.39738 0.84996 0.78077 0.77607 0.78107 1.19889 1.19720 1.19763 1.23474 0.96336 0.88377 0.98122 1.48390 1.52112 1.28603 1.04385 1.19836 0.80386 0.84933 0.83116 1.90805 1.41217 1.28672 1.83507 1.23057 1.08719 1.03532 0.87288 1.20075 0.74648 0.76338 0.87593 1.93194 1.30746 1.96328 1.96743 1.93195 1.87214 1.39673 1.96829 1.93214 1.86232 1.74948 1.61678 0.93412 0.90103 0.92381 0.88656 0.89990 0.82990 0.87575 0.90380 0.76884 0.91381 0.87749 0.89889 0.81281 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.11 71.98 0.66 -2.00 16 2 C 0.14 2.16 3.46 45.35 0.16 2.32 16 3 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.64 6.18 31.78 0.20 -1.45 16 5 C 0.08 1.27 3.32 46.30 0.15 1.42 16 6 H 0.11 1.52 7.92 -2.39 -0.02 1.50 16 7 N -0.66 -15.75 6.00 -488.41 -2.93 -18.68 16 8 C 0.06 1.72 6.04 85.56 0.52 2.23 16 9 C 0.44 18.58 7.82 87.66 0.69 19.26 16 10 O -0.62 -31.89 15.78 -3.08 -0.05 -31.93 16 11 N -0.57 -27.16 5.29 -306.99 -1.62 -28.78 16 12 C -0.33 -17.88 9.68 84.04 0.81 -17.07 16 13 H 0.08 4.52 7.16 -2.91 -0.02 4.50 16 14 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 15 N -0.92 -47.51 13.05 21.66 0.28 -47.22 16 16 Si 0.99 41.36 29.55 68.60 2.03 43.38 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.06 0.73 6.27 86.85 0.54 1.28 16 21 N -0.60 -9.29 3.06 -788.04 -2.41 -11.71 16 22 C 0.53 9.76 7.41 87.66 0.65 10.40 16 23 O -0.56 -15.13 13.88 -3.05 -0.04 -15.17 16 24 C -0.19 -2.10 4.76 29.85 0.14 -1.96 16 25 C 0.47 8.28 2.89 71.98 0.21 8.49 16 26 F -0.19 -4.21 16.40 44.97 0.74 -3.47 16 27 F -0.19 -4.15 16.40 44.97 0.74 -3.42 16 28 F -0.18 -2.97 17.32 44.97 0.78 -2.20 16 29 H 0.05 1.03 6.89 -2.39 -0.02 1.01 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.08 1.33 7.85 -2.39 -0.02 1.31 16 34 H 0.35 8.76 8.01 -89.70 -0.72 8.04 16 35 H 0.11 2.56 8.09 -2.39 -0.02 2.54 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.40 17.68 7.90 -92.70 -0.73 16.94 16 38 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 39 H 0.10 0.79 7.48 -2.39 -0.02 0.77 16 40 H 0.08 0.97 7.80 -2.38 -0.02 0.95 16 41 H 0.17 0.87 7.85 -2.39 -0.02 0.85 16 42 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.77 364.58 2.33 -69.44 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.37 Total: 26.93 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 5.19 Total: 22.82 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -6.68 Total: -106.39 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.09 Total: -47.10 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 2.25 Total: -9.08 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -71.77 2.33 -69.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486110230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.148 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds