Wall clock time and date at job start Tue Mar 31 2020 20:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.87395 * 2 1 4 4 C 1.54326 * 109.88158 * 121.17584 * 2 1 3 5 5 C 1.55156 * 102.94376 * 97.22162 * 4 2 1 6 6 H 1.09009 * 111.03664 * 277.41388 * 5 4 2 7 7 N 1.46895 * 111.00672 * 153.58101 * 5 4 2 8 8 C 1.46893 * 111.00318 * 161.34948 * 7 5 4 9 9 C 1.50708 * 109.47146 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99719 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99349 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00515 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99490 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.54911 * 101.58038 * 35.50104 * 5 4 2 21 21 N 1.47023 * 109.87733 * 238.97948 * 2 1 3 22 22 C 1.34768 * 125.64863 * 59.49586 * 21 2 1 23 23 O 1.21282 * 120.00182 * 0.02562 * 22 21 2 24 24 C 1.50705 * 120.00282 * 180.02562 * 22 21 2 25 25 C 1.52993 * 109.47416 * 179.97438 * 24 22 21 26 26 F 1.39905 * 109.46940 * 59.99981 * 25 24 22 27 27 F 1.39897 * 109.47157 * 179.97438 * 25 24 22 28 28 F 1.39894 * 109.47482 * 300.00286 * 25 24 22 29 29 H 1.08999 * 109.47666 * 179.56798 * 1 2 3 30 30 H 1.09004 * 109.47358 * 299.56756 * 1 2 3 31 31 H 1.09004 * 109.47554 * 59.56241 * 1 2 3 32 32 H 1.09002 * 110.71673 * 338.85858 * 4 2 1 33 33 H 1.08997 * 110.72223 * 215.58864 * 4 2 1 34 34 H 1.00899 * 111.00063 * 37.39124 * 7 5 4 35 35 H 1.09002 * 109.47091 * 59.99845 * 8 7 5 36 36 H 1.09000 * 109.47343 * 299.99463 * 8 7 5 37 37 H 0.96996 * 120.00564 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 39 39 H 1.08996 * 110.36635 * 81.83286 * 20 5 4 40 40 H 1.08996 * 110.36266 * 204.04313 * 20 5 4 41 41 H 1.09000 * 109.46708 * 300.00222 * 24 22 21 42 42 H 1.09003 * 109.47085 * 59.99617 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2417 5 6 2.3518 -2.1705 0.6894 6 1 1.4453 -2.7752 0.6566 7 7 3.3963 -2.8352 1.4799 8 6 3.3754 -4.2881 1.2642 9 6 4.4586 -4.9341 2.0891 10 8 5.1776 -4.2512 2.7876 11 7 4.6290 -6.2705 2.0499 12 6 5.6142 -6.8581 2.8007 13 1 6.2539 -6.2503 3.4233 14 6 5.7895 -8.2360 2.7607 15 7 5.0108 -8.9758 2.0035 16 14 7.1323 -9.0367 3.7832 17 1 8.3855 -9.1036 2.9893 18 1 7.3658 -8.2333 5.0100 19 1 6.7129 -10.4097 4.1630 20 6 2.8567 -1.8489 -0.7393 21 7 2.0299 -0.7125 -1.1849 22 6 1.7742 -0.3820 -2.4661 23 8 1.0771 0.5782 -2.7172 24 6 2.3544 -1.2054 -3.5871 25 6 1.9135 -0.6209 -4.9304 26 9 2.3683 0.6979 -5.0369 27 9 2.4527 -1.3850 -5.9709 28 9 0.5171 -0.6406 -5.0119 29 1 -0.3634 -1.0276 -0.0077 30 1 -0.3634 0.5071 0.8939 31 1 -0.3634 0.5206 -0.8860 32 1 1.2917 -0.7918 2.0190 33 1 2.9656 -0.2855 1.6179 34 1 3.3040 -2.6138 2.4600 35 1 3.5467 -4.5013 0.2091 36 1 2.4053 -4.6858 1.5624 37 1 4.0543 -6.8165 1.4910 38 1 5.1335 -9.9376 1.9753 39 1 3.9090 -1.5659 -0.7150 40 1 2.7104 -2.7069 -1.3954 41 1 3.4424 -1.1904 -3.5233 42 1 1.9998 -2.2329 -3.5043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486110235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:49 Heat of formation + Delta-G solvation = -221.445701 kcal Electronic energy + Delta-G solvation = -29350.088646 eV Core-core repulsion = 24529.030992 eV Total energy + Delta-G solvation = -4821.057654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.31618 -47.85311 -47.73479 -40.67114 -38.60461 -37.90179 -34.96372 -33.88126 -33.12245 -31.32829 -31.16778 -30.07178 -26.48376 -26.19346 -24.78693 -24.07099 -22.30063 -20.88268 -19.78247 -19.31258 -18.82702 -18.78531 -17.96999 -17.63839 -17.20462 -16.41770 -16.06841 -15.81184 -15.29457 -15.12658 -14.67670 -14.60396 -14.51838 -14.21067 -14.15447 -13.92064 -13.90172 -13.83917 -13.71532 -13.55396 -13.47879 -13.14343 -12.91085 -12.62444 -12.39452 -12.25723 -12.12350 -11.80600 -11.60287 -11.31684 -11.24635 -11.10200 -10.87891 -10.44823 -10.30212 -10.28552 -9.58226 -9.04883 -8.61169 -8.27912 -8.04337 -6.48926 -3.90031 2.12107 2.13304 2.64595 3.12922 3.22415 3.27673 3.39866 3.56928 3.73002 3.81090 3.97111 4.12471 4.20227 4.28197 4.44254 4.62729 4.71368 4.72262 4.90207 5.00009 5.07873 5.13561 5.20633 5.29299 5.33007 5.54157 5.59053 5.62484 5.72909 5.80733 5.82725 5.92337 6.09418 6.16531 6.99755 7.05474 7.42977 7.48581 7.64320 7.98319 8.52660 9.10427 9.45791 9.96506 10.68599 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.002264 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.810539 B =12362.086659 C =13641.046989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.075 3.925 6 H 0.061 0.939 7 N -0.656 5.656 8 C 0.049 3.951 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.269 1.269 19 H -0.283 1.283 20 C 0.100 3.900 21 N -0.608 5.608 22 C 0.536 3.464 23 O -0.522 6.522 24 C -0.195 4.195 25 C 0.473 3.527 26 F -0.174 7.174 27 F -0.182 7.182 28 F -0.174 7.174 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.357 0.643 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 14.043 -10.059 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.168 4.168 5 C -0.036 4.036 6 H 0.079 0.921 7 N -0.290 5.290 8 C -0.084 4.084 9 C 0.224 3.776 10 O -0.467 6.467 11 N -0.198 5.198 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.194 1.194 19 H -0.209 1.209 20 C -0.023 4.023 21 N -0.342 5.342 22 C 0.323 3.677 23 O -0.399 6.399 24 C -0.236 4.236 25 C 0.419 3.581 26 F -0.155 7.155 27 F -0.163 7.163 28 F -0.155 7.155 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.179 0.821 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.158 0.842 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.935 14.948 -10.303 20.234 hybrid contribution -0.452 -1.277 0.364 1.403 sum -9.387 13.671 -9.939 19.334 Atomic orbital electron populations 1.22178 0.94429 1.02488 1.03206 1.21557 0.94811 0.96418 0.83525 0.90144 1.22909 1.02653 0.94776 0.96456 1.22598 0.93216 0.94643 0.93185 0.92082 1.59972 1.46839 1.07947 1.14274 1.21755 0.97747 0.87859 1.01005 1.19743 0.87843 0.83088 0.86909 1.90533 1.48794 1.62559 1.44855 1.41863 1.31657 1.05162 1.41146 1.19702 1.10534 0.90521 1.22268 0.87875 1.25270 0.98572 0.96294 0.97717 1.69606 1.38762 1.06581 1.39250 0.85857 0.80317 0.78208 0.79921 1.20337 1.19393 1.20907 1.22534 0.95999 0.88036 0.95712 1.48397 1.50552 1.30695 1.04558 1.19320 0.81160 0.84928 0.82311 1.90809 1.37997 1.28113 1.82933 1.22986 1.06782 1.03589 0.90213 1.19692 0.75578 0.76483 0.86382 1.93225 1.88680 1.37010 1.96584 1.93211 1.86003 1.75653 1.61446 1.93221 1.29354 1.96239 1.96704 0.92427 0.91471 0.90968 0.89580 0.89003 0.82143 0.89592 0.93589 0.77459 0.91798 0.89171 0.90502 0.84180 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.06 37.16 0.34 -1.10 16 2 C 0.14 1.25 3.50 -66.95 -0.23 1.01 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.06 5.96 -24.90 -0.15 -1.21 16 5 C 0.07 0.72 3.32 -65.57 -0.22 0.50 16 6 H 0.06 0.57 7.92 -51.92 -0.41 0.16 16 7 N -0.66 -8.65 6.00 -105.72 -0.63 -9.28 16 8 C 0.05 0.74 6.04 -4.98 -0.03 0.71 16 9 C 0.44 9.53 7.82 -10.98 -0.09 9.45 16 10 O -0.58 -14.83 15.78 5.55 0.09 -14.74 16 11 N -0.56 -13.41 5.29 -10.96 -0.06 -13.47 16 12 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 13 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -23.65 13.05 55.50 0.72 -22.92 16 16 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.10 0.88 6.34 -2.53 -0.02 0.86 16 21 N -0.61 -5.66 3.08 -163.02 -0.50 -6.16 16 22 C 0.54 5.56 7.40 -10.99 -0.08 5.48 16 23 O -0.52 -7.17 13.73 5.56 0.08 -7.09 16 24 C -0.19 -1.44 4.76 -27.88 -0.13 -1.57 16 25 C 0.47 4.60 2.89 37.15 0.11 4.71 16 26 F -0.17 -2.01 16.40 2.25 0.04 -1.97 16 27 F -0.18 -1.70 17.32 2.25 0.04 -1.66 16 28 F -0.17 -2.00 16.40 2.25 0.04 -1.96 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.77 6.74 -51.93 -0.35 0.42 16 32 H 0.09 0.61 7.83 -51.93 -0.41 0.20 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.36 4.94 8.23 -39.29 -0.32 4.62 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.55 7.48 -51.93 -0.39 0.17 16 41 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.14 0.69 7.85 -51.93 -0.41 0.29 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -32.20 364.67 -5.96 -38.16 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.50 Total: 9.10 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -0.74 Total: 11.15 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.47 Total: -51.83 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.16 Total: -21.83 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.20 -5.96 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486110235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.282 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds