Wall clock time and date at job start Tue Mar 31 2020 20:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.87395 * 2 1 4 4 C 1.54326 * 109.88158 * 121.17584 * 2 1 3 5 5 C 1.55156 * 102.94376 * 97.22162 * 4 2 1 6 6 H 1.09009 * 111.03664 * 277.41388 * 5 4 2 7 7 N 1.46895 * 111.00672 * 153.58101 * 5 4 2 8 8 C 1.46893 * 111.00318 * 161.34948 * 7 5 4 9 9 C 1.50708 * 109.47146 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99719 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99349 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00515 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99490 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.54911 * 101.58038 * 35.50104 * 5 4 2 21 21 N 1.47023 * 109.87733 * 238.97948 * 2 1 3 22 22 C 1.34768 * 125.64863 * 59.49586 * 21 2 1 23 23 O 1.21282 * 120.00182 * 0.02562 * 22 21 2 24 24 C 1.50705 * 120.00282 * 180.02562 * 22 21 2 25 25 C 1.52993 * 109.47416 * 179.97438 * 24 22 21 26 26 F 1.39905 * 109.46940 * 59.99981 * 25 24 22 27 27 F 1.39897 * 109.47157 * 179.97438 * 25 24 22 28 28 F 1.39894 * 109.47482 * 300.00286 * 25 24 22 29 29 H 1.08999 * 109.47666 * 179.56798 * 1 2 3 30 30 H 1.09004 * 109.47358 * 299.56756 * 1 2 3 31 31 H 1.09004 * 109.47554 * 59.56241 * 1 2 3 32 32 H 1.09002 * 110.71673 * 338.85858 * 4 2 1 33 33 H 1.08997 * 110.72223 * 215.58864 * 4 2 1 34 34 H 1.00899 * 111.00063 * 37.39124 * 7 5 4 35 35 H 1.09002 * 109.47091 * 59.99845 * 8 7 5 36 36 H 1.09000 * 109.47343 * 299.99463 * 8 7 5 37 37 H 0.96996 * 120.00564 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 39 39 H 1.08996 * 110.36635 * 81.83286 * 20 5 4 40 40 H 1.08996 * 110.36266 * 204.04313 * 20 5 4 41 41 H 1.09000 * 109.46708 * 300.00222 * 24 22 21 42 42 H 1.09003 * 109.47085 * 59.99617 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2417 5 6 2.3518 -2.1705 0.6894 6 1 1.4453 -2.7752 0.6566 7 7 3.3963 -2.8352 1.4799 8 6 3.3754 -4.2881 1.2642 9 6 4.4586 -4.9341 2.0891 10 8 5.1776 -4.2512 2.7876 11 7 4.6290 -6.2705 2.0499 12 6 5.6142 -6.8581 2.8007 13 1 6.2539 -6.2503 3.4233 14 6 5.7895 -8.2360 2.7607 15 7 5.0108 -8.9758 2.0035 16 14 7.1323 -9.0367 3.7832 17 1 8.3855 -9.1036 2.9893 18 1 7.3658 -8.2333 5.0100 19 1 6.7129 -10.4097 4.1630 20 6 2.8567 -1.8489 -0.7393 21 7 2.0299 -0.7125 -1.1849 22 6 1.7742 -0.3820 -2.4661 23 8 1.0771 0.5782 -2.7172 24 6 2.3544 -1.2054 -3.5871 25 6 1.9135 -0.6209 -4.9304 26 9 2.3683 0.6979 -5.0369 27 9 2.4527 -1.3850 -5.9709 28 9 0.5171 -0.6406 -5.0119 29 1 -0.3634 -1.0276 -0.0077 30 1 -0.3634 0.5071 0.8939 31 1 -0.3634 0.5206 -0.8860 32 1 1.2917 -0.7918 2.0190 33 1 2.9656 -0.2855 1.6179 34 1 3.3040 -2.6138 2.4600 35 1 3.5467 -4.5013 0.2091 36 1 2.4053 -4.6858 1.5624 37 1 4.0543 -6.8165 1.4910 38 1 5.1335 -9.9376 1.9753 39 1 3.9090 -1.5659 -0.7150 40 1 2.7104 -2.7069 -1.3954 41 1 3.4424 -1.1904 -3.5233 42 1 1.9998 -2.2329 -3.5043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486110235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:48 Heat of formation + Delta-G solvation = -244.772011 kcal Electronic energy + Delta-G solvation = -29351.100150 eV Core-core repulsion = 24529.030992 eV Total energy + Delta-G solvation = -4822.069158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.09637 -48.61762 -48.56362 -41.43771 -40.11038 -38.95143 -36.22948 -35.56298 -33.83982 -33.22530 -31.84810 -31.02576 -27.92374 -26.89472 -25.91160 -25.30194 -23.09015 -21.64334 -21.07321 -20.43800 -19.86645 -19.59456 -19.55560 -18.38586 -18.09420 -17.50998 -17.17378 -16.69564 -16.64402 -16.22685 -16.01742 -15.70067 -15.45128 -15.32017 -15.08070 -14.98013 -14.76786 -14.73626 -14.70660 -14.61918 -14.25224 -13.94784 -13.85783 -13.63057 -13.46738 -13.29903 -13.09811 -13.03409 -12.88978 -12.79475 -12.38656 -12.12044 -12.04926 -11.97205 -11.63334 -11.47167 -11.11400 -10.29829 -9.97622 -9.81005 -9.36535 -8.44037 -5.91893 1.37310 1.40054 1.42999 1.44638 1.56166 1.93131 2.10514 2.31226 2.69527 2.78639 3.03687 3.06113 3.24383 3.37891 3.52685 3.62779 3.75416 4.00700 4.10625 4.21022 4.25867 4.31616 4.37128 4.39643 4.55361 4.61168 4.66532 4.69672 4.88206 4.95333 5.02188 5.09209 5.23982 5.38460 5.44529 5.91792 6.12646 6.30515 6.39642 6.63907 6.88961 7.16710 7.61403 8.16625 8.73142 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.002264 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.810539 B =12362.086659 C =13641.046989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.120 4.120 5 C 0.077 3.923 6 H 0.075 0.925 7 N -0.667 5.667 8 C 0.064 3.936 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.574 5.574 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.988 3.012 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.100 3.900 21 N -0.604 5.604 22 C 0.531 3.469 23 O -0.563 6.563 24 C -0.187 4.187 25 C 0.468 3.532 26 F -0.189 7.189 27 F -0.179 7.179 28 F -0.187 7.187 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.353 0.647 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.166 0.834 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 13.262 -10.260 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.034 4.034 6 H 0.092 0.908 7 N -0.301 5.301 8 C -0.068 4.068 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.212 5.212 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.812 3.188 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.022 4.022 21 N -0.337 5.337 22 C 0.319 3.681 23 O -0.442 6.442 24 C -0.227 4.227 25 C 0.414 3.586 26 F -0.170 7.170 27 F -0.161 7.161 28 F -0.169 7.169 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.184 0.816 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.216 14.158 -10.518 19.900 hybrid contribution -0.387 -0.938 0.421 1.099 sum -9.604 13.219 -10.097 19.208 Atomic orbital electron populations 1.22104 0.94159 1.02508 1.02800 1.21603 0.94996 0.96270 0.83789 0.90916 1.22850 1.02875 0.93739 0.96363 1.22642 0.92663 0.94970 0.93118 0.90764 1.59944 1.48856 1.06830 1.14422 1.21622 0.95821 0.88590 1.00758 1.20934 0.88178 0.82241 0.86063 1.90507 1.50656 1.63315 1.46521 1.41936 1.31595 1.06174 1.41463 1.19634 1.11840 0.91121 1.23494 0.90367 1.25966 1.00361 0.96300 0.98518 1.69659 1.39631 1.06927 1.39873 0.84992 0.77985 0.77474 0.78311 1.19772 1.19809 1.19766 1.22586 0.95482 0.88493 0.95683 1.48428 1.50172 1.30704 1.04437 1.19795 0.80613 0.84664 0.83044 1.90797 1.39892 1.29988 1.83528 1.23062 1.08178 1.04118 0.87295 1.20061 0.74953 0.76031 0.87554 1.93194 1.88764 1.38317 1.96732 1.93213 1.85852 1.75405 1.61596 1.93192 1.30599 1.96261 1.96840 0.92072 0.89969 0.93318 0.88079 0.89500 0.82720 0.87133 0.91262 0.76913 0.91385 0.89714 0.88152 0.81594 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.06 71.98 0.65 -1.86 16 2 C 0.14 2.21 3.50 45.34 0.16 2.37 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.12 -1.70 5.96 31.78 0.19 -1.51 16 5 C 0.08 1.23 3.32 46.31 0.15 1.38 16 6 H 0.07 1.07 7.92 -2.38 -0.02 1.05 16 7 N -0.67 -15.97 6.00 -488.40 -2.93 -18.90 16 8 C 0.06 1.76 6.04 85.56 0.52 2.28 16 9 C 0.44 18.71 7.82 87.66 0.69 19.39 16 10 O -0.62 -31.85 15.78 -3.05 -0.05 -31.90 16 11 N -0.57 -27.28 5.29 -306.98 -1.62 -28.91 16 12 C -0.33 -17.91 9.68 84.04 0.81 -17.10 16 13 H 0.08 4.54 7.16 -2.92 -0.02 4.52 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 15 N -0.92 -47.62 13.05 21.66 0.28 -47.34 16 16 Si 0.99 41.40 29.55 68.60 2.03 43.43 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 C 0.10 1.43 6.34 86.86 0.55 1.98 16 21 N -0.60 -9.97 3.08 -788.07 -2.43 -12.40 16 22 C 0.53 10.20 7.40 87.66 0.65 10.84 16 23 O -0.56 -15.34 13.73 -3.04 -0.04 -15.38 16 24 C -0.19 -2.29 4.76 29.85 0.14 -2.14 16 25 C 0.47 8.56 2.89 71.98 0.21 8.77 16 26 F -0.19 -4.31 16.40 44.97 0.74 -3.57 16 27 F -0.18 -3.07 17.32 44.97 0.78 -2.30 16 28 F -0.19 -4.21 16.40 44.97 0.74 -3.47 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.03 6.74 -2.39 -0.02 1.01 16 32 H 0.10 1.15 7.83 -2.39 -0.02 1.13 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.35 9.14 8.23 -89.69 -0.74 8.41 16 35 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 37 H 0.40 17.77 7.90 -92.71 -0.73 17.04 16 38 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 0.99 7.48 -2.39 -0.02 0.97 16 41 H 0.17 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.17 1.04 7.85 -2.39 -0.02 1.02 16 Total: -1.00 -71.12 364.67 2.29 -68.83 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.39 Total: 27.62 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 5.19 Total: 24.28 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -6.70 Total: -107.54 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.09 Total: -47.28 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 2.25 Total: -9.34 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -71.12 2.29 -68.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486110235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.942 kcal (2) G-P(sol) polarization free energy of solvation -71.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds