Wall clock time and date at job start Tue Mar 31 2020 21:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 H 1.09001 * 112.84905 * 23.81116 * 7 6 4 9 9 C 1.53781 * 113.61433 * 155.00089 * 7 6 4 10 10 C 1.53781 * 87.07867 * 89.12078 * 9 7 6 11 11 H 1.08992 * 113.61266 * 270.79724 * 10 9 7 12 12 N 1.46907 * 113.61499 * 139.97958 * 10 9 7 13 13 C 1.46891 * 110.99882 * 154.99642 * 12 10 9 14 14 C 1.50706 * 109.47265 * 180.02562 * 13 12 10 15 15 O 1.21288 * 119.99428 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00337 * 180.02562 * 14 13 12 17 17 C 1.37091 * 119.99777 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00467 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99661 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99789 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99937 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47611 * 89.99814 * 21 19 17 23 23 H 1.48503 * 109.46715 * 209.99984 * 21 19 17 24 24 H 1.48504 * 109.47108 * 329.99593 * 21 19 17 25 25 C 1.53779 * 87.08432 * 25.43214 * 10 9 7 26 26 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 27 27 F 1.39907 * 109.47109 * 179.97438 * 26 2 1 28 28 F 1.39894 * 109.47338 * 300.00062 * 26 2 1 29 29 F 1.39898 * 109.46956 * 60.00039 * 26 2 1 30 30 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 32 32 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 34 34 H 1.09007 * 113.61281 * 203.66562 * 9 7 6 35 35 H 1.08998 * 113.61888 * 334.48577 * 9 7 6 36 36 H 1.00907 * 110.99523 * 31.04747 * 12 10 9 37 37 H 1.09001 * 109.47765 * 299.99913 * 13 12 10 38 38 H 1.09006 * 109.47314 * 60.00147 * 13 12 10 39 39 H 0.96998 * 119.99526 * 359.97438 * 16 14 13 40 40 H 0.96997 * 119.99328 * 179.97438 * 20 19 17 41 41 H 1.09000 * 113.61513 * 220.01986 * 25 10 9 42 42 H 1.08999 * 113.61644 * 89.11386 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1855 -0.9472 -3.6507 8 1 2.4290 -1.9931 -3.4639 9 6 1.2979 -0.7331 -4.8881 10 6 2.1581 0.5045 -5.1937 11 1 1.7902 1.4180 -4.7267 12 7 2.4582 0.6746 -6.6217 13 6 2.7332 2.0825 -6.9377 14 6 3.0354 2.2176 -8.4079 15 8 3.0234 1.2373 -9.1220 16 7 3.3201 3.4276 -8.9290 17 6 3.5945 3.5504 -10.2666 18 1 3.5830 2.6777 -10.9026 19 6 3.8875 4.7980 -10.8039 20 7 4.1510 4.9157 -12.0860 21 14 3.9081 6.3073 -9.7036 22 1 5.2736 6.4997 -9.1526 23 1 3.5210 7.5024 -10.4955 24 1 2.9460 6.1199 -8.5880 25 6 3.2857 -0.1818 -4.4048 26 6 2.0400 -0.7212 1.2492 27 9 3.4391 -0.7217 1.2489 28 9 1.5737 -0.0618 2.3915 29 9 1.5737 -2.0402 1.2492 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1446 0.5355 -2.5436 34 1 1.3896 -1.5234 -5.6333 35 1 0.2615 -0.4973 -4.6466 36 1 1.7088 0.3153 -7.1939 37 1 1.8614 2.6877 -6.6893 38 1 3.5902 2.4245 -6.3573 39 1 3.3301 4.2114 -8.3578 40 1 4.3551 5.7866 -12.4610 41 1 3.8544 0.5005 -3.7730 42 1 3.9208 -0.8214 -5.0178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490918857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:14 Heat of formation + Delta-G solvation = -228.260669 kcal Electronic energy + Delta-G solvation = -28791.931341 eV Core-core repulsion = 23970.578169 eV Total energy + Delta-G solvation = -4821.353173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -51.12564 -48.63024 -48.58485 -41.46542 -40.32818 -39.49354 -36.17080 -35.58769 -35.11482 -33.75009 -33.15072 -28.64562 -27.42012 -26.67341 -26.15526 -24.96807 -23.59428 -21.81504 -21.28948 -20.51477 -20.14670 -19.81492 -19.46752 -18.56562 -18.01310 -17.67200 -17.07398 -16.93325 -16.50218 -16.36012 -15.94162 -15.70194 -15.60330 -15.35682 -15.19507 -14.99431 -14.95474 -14.80612 -14.73294 -14.69284 -14.41446 -14.10816 -14.03095 -13.53629 -13.38449 -13.29678 -13.11913 -12.96040 -12.89484 -12.57004 -12.40198 -12.39055 -11.96942 -11.53360 -11.48313 -11.45820 -11.10519 -10.41200 -10.24106 -10.15140 -9.27701 -8.40543 -6.01628 1.30443 1.35930 1.37220 1.45795 1.49258 1.96833 1.97310 2.24157 2.65808 2.77551 2.99664 3.08088 3.15948 3.43798 3.57060 3.60481 3.64220 3.81936 3.95995 4.02282 4.15767 4.18198 4.45836 4.57513 4.58604 4.64828 4.69445 4.83967 4.89819 4.99872 5.09422 5.13928 5.15857 5.49063 5.55939 5.93600 6.15922 6.35223 6.44713 6.60885 6.89243 7.05360 7.41005 7.98115 8.77170 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.001864 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.623395 B =15014.438686 C =15640.899018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 H 0.175 0.825 4 C 0.521 3.479 5 O -0.568 6.568 6 N -0.685 5.685 7 C 0.124 3.876 8 H 0.088 0.912 9 C -0.133 4.133 10 C 0.062 3.938 11 H 0.101 0.899 12 N -0.678 5.678 13 C 0.063 3.937 14 C 0.446 3.554 15 O -0.616 6.616 16 N -0.591 5.591 17 C -0.329 4.329 18 H 0.053 0.947 19 C -0.018 4.018 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.227 1.227 25 C -0.140 4.140 26 C 0.463 3.537 27 F -0.190 7.190 28 F -0.177 7.177 29 F -0.187 7.187 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.421 0.579 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.348 0.652 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.069 0.931 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 -3.225 31.856 34.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 H 0.193 0.807 4 C 0.306 3.694 5 O -0.446 6.446 6 N -0.337 5.337 7 C 0.018 3.982 8 H 0.107 0.893 9 C -0.171 4.171 10 C -0.048 4.048 11 H 0.118 0.882 12 N -0.311 5.311 13 C -0.069 4.069 14 C 0.234 3.766 15 O -0.501 6.501 16 N -0.233 5.233 17 C -0.458 4.458 18 H 0.072 0.928 19 C -0.217 4.217 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.184 1.184 23 H -0.201 1.201 24 H -0.150 1.150 25 C -0.180 4.180 26 C 0.408 3.592 27 F -0.172 7.172 28 F -0.158 7.158 29 F -0.169 7.169 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.260 0.740 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.619 -4.646 31.357 33.430 hybrid contribution -0.347 1.194 -0.156 1.253 sum -10.965 -3.452 31.201 33.251 Atomic orbital electron populations 1.21959 0.86922 1.04737 1.07086 1.22722 1.02968 1.03705 0.87995 0.80720 1.20235 0.79724 0.84058 0.85344 1.90830 1.39015 1.27725 1.87034 1.45344 1.52767 1.31970 1.03585 1.21618 0.95925 0.96869 0.83787 0.89344 1.23509 0.99371 0.98147 0.96104 1.23268 0.96344 0.98030 0.87137 0.88172 1.60157 1.49089 1.16553 1.05307 1.21695 1.03224 0.91458 0.90574 1.21112 0.81388 0.82561 0.91508 1.90548 1.57039 1.38904 1.63573 1.42038 1.64296 1.08746 1.08228 1.19001 1.46590 0.95703 0.84531 0.92835 1.26173 0.95955 1.01783 0.97759 1.69815 1.47397 1.26489 1.13918 0.85333 0.80320 0.76706 0.78939 1.18367 1.20120 1.15017 1.23532 0.97101 0.99619 0.97726 1.20272 0.75324 0.77662 0.85928 1.93197 1.30775 1.96392 1.96801 1.93194 1.88357 1.80536 1.53719 1.93178 1.88340 1.38559 1.96797 0.91721 0.88401 0.86848 0.74017 0.88556 0.88229 0.83218 0.89914 0.87258 0.77416 0.91182 0.91271 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 8.84 71.98 0.64 0.26 16 2 C -0.15 -1.21 2.71 -11.54 -0.03 -1.25 16 3 H 0.18 0.19 8.14 -2.38 -0.02 0.17 16 4 C 0.52 7.65 6.93 87.66 0.61 8.26 16 5 O -0.57 -14.46 14.43 -3.04 -0.04 -14.51 16 6 N -0.68 -6.49 5.15 -440.03 -2.27 -8.76 16 7 C 0.12 1.80 4.32 45.52 0.20 2.00 16 8 H 0.09 1.71 7.46 -2.39 -0.02 1.69 16 9 C -0.13 -1.65 7.40 31.12 0.23 -1.42 16 10 C 0.06 0.97 4.02 45.44 0.18 1.15 16 11 H 0.10 1.02 7.86 -2.39 -0.02 1.00 16 12 N -0.68 -17.38 6.18 -492.85 -3.05 -20.43 16 13 C 0.06 1.71 6.01 85.56 0.51 2.23 16 14 C 0.45 19.35 7.82 87.66 0.69 20.03 16 15 O -0.62 -33.46 15.78 -3.06 -0.05 -33.51 16 16 N -0.59 -27.01 5.09 -306.98 -1.56 -28.58 16 17 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16 18 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 19 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 20 N -0.94 -56.03 13.96 21.67 0.30 -55.73 16 21 Si 0.97 37.72 27.74 68.60 1.90 39.62 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.23 -7.21 6.52 99.48 0.65 -6.57 16 25 C -0.14 -2.50 7.68 31.12 0.24 -2.26 16 26 C 0.46 7.19 2.42 71.98 0.17 7.37 16 27 F -0.19 -3.98 16.40 44.97 0.74 -3.24 16 28 F -0.18 -2.38 16.80 44.97 0.76 -1.62 16 29 F -0.19 -3.79 15.88 44.97 0.71 -3.08 16 30 H 0.06 0.38 7.80 -2.39 -0.02 0.36 16 31 H 0.10 0.05 7.80 -2.39 -0.02 0.03 16 32 H 0.11 -0.33 7.55 -2.39 -0.02 -0.35 16 33 H 0.42 0.80 8.11 -92.71 -0.75 0.04 16 34 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.35 9.52 8.25 -89.69 -0.74 8.78 16 37 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 38 H 0.11 2.56 8.14 -2.38 -0.02 2.55 16 39 H 0.39 14.48 5.76 -92.71 -0.53 13.95 16 40 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -85.72 365.23 1.22 -84.51 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.98 Total: 27.68 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 4.76 Total: 17.65 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -6.57 Total: -113.49 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.09 Total: -48.02 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 2.21 Total: -7.94 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.90 Total: 39.62 kcal Total: -85.72 1.22 -84.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490918857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.754 kcal (2) G-P(sol) polarization free energy of solvation -85.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds