Wall clock time and date at job start Tue Mar 31 2020 20:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.99830 * 2 1 4 4 C 1.54340 * 109.98864 * 238.96586 * 2 1 3 5 5 H 1.09001 * 110.51418 * 336.97732 * 4 2 1 6 6 N 1.46498 * 111.00065 * 100.12592 * 4 2 1 7 7 C 1.36941 * 120.00047 * 200.23680 * 6 4 2 8 8 H 1.08003 * 119.99780 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00294 * 180.02562 * 7 6 4 10 10 N 1.31628 * 119.99698 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00199 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47564 * 89.99688 * 11 9 7 13 13 H 1.48494 * 109.47311 * 209.99912 * 11 9 7 14 14 H 1.48497 * 109.47244 * 329.99549 * 11 9 7 15 15 C 1.55155 * 103.01841 * 218.66547 * 4 2 1 16 16 C 1.54904 * 101.58212 * 35.30628 * 15 4 2 17 17 N 1.47017 * 109.88524 * 121.09806 * 2 1 3 18 18 C 1.34778 * 125.65243 * 298.39766 * 17 2 1 19 19 O 1.21283 * 119.99532 * 359.71012 * 18 17 2 20 20 C 1.50698 * 120.00411 * 179.71299 * 18 17 2 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 O 1.21283 * 120.00472 * 0.02562 * 21 20 18 23 23 N 1.34777 * 119.99538 * 179.97438 * 21 20 18 24 24 C 1.46499 * 119.99665 * 179.72653 * 23 21 20 25 25 C 1.53004 * 109.47198 * 180.27868 * 24 23 21 26 26 F 1.39906 * 109.47024 * 60.00093 * 25 24 23 27 27 F 1.39898 * 109.47292 * 179.97438 * 25 24 23 28 28 F 1.39897 * 109.46821 * 299.99881 * 25 24 23 29 29 H 1.09000 * 109.46908 * 300.35263 * 1 2 3 30 30 H 1.08998 * 109.46990 * 60.35259 * 1 2 3 31 31 H 1.09003 * 109.47209 * 180.35464 * 1 2 3 32 32 H 0.97000 * 120.00239 * 20.23169 * 6 4 2 33 33 H 0.96996 * 119.99453 * 180.02562 * 10 9 7 34 34 H 1.09001 * 111.00106 * 277.23292 * 15 4 2 35 35 H 1.09000 * 111.00111 * 153.38773 * 15 4 2 36 36 H 1.09003 * 110.36580 * 204.14726 * 16 15 4 37 37 H 1.09004 * 110.46163 * 81.88093 * 16 15 4 38 38 H 1.09003 * 109.46601 * 59.99956 * 20 18 17 39 39 H 1.08993 * 109.46922 * 300.00256 * 20 18 17 40 40 H 0.97001 * 120.00485 * 0.02562 * 23 21 20 41 41 H 1.09009 * 109.47454 * 300.27637 * 24 23 21 42 42 H 1.08998 * 109.47492 * 60.27932 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1939 -2.2893 7 6 2.5623 -0.2274 -3.5885 8 1 2.3420 -1.2540 -3.8416 9 6 2.9469 0.6647 -4.5800 10 7 3.2159 1.9157 -4.2714 11 14 3.0830 0.0898 -6.3520 12 1 1.7780 0.2783 -7.0352 13 1 4.1265 0.8822 -7.0508 14 1 3.4526 -1.3481 -6.3790 15 6 3.2863 -1.5183 -0.6916 16 6 2.8099 -1.8825 0.7366 17 7 2.0301 -0.7141 1.1838 18 6 1.8075 -0.3622 2.4657 19 8 1.1476 0.6236 2.7180 20 6 2.3785 -1.1936 3.5854 21 6 1.9875 -0.5894 4.9094 22 8 1.3113 0.4170 4.9408 23 7 2.3884 -1.1680 6.0587 24 6 2.0134 -0.5773 7.3458 25 6 2.5973 -1.4186 8.4826 26 9 3.9917 -1.4485 8.3719 27 9 2.2397 -0.8542 9.7117 28 9 2.0951 -2.7219 8.4036 29 1 -0.3633 0.5193 0.8868 30 1 -0.3633 0.5083 -0.8931 31 1 -0.3634 -1.0277 0.0064 32 1 2.6612 1.1158 -2.0619 33 1 3.4843 2.5391 -4.9643 34 1 4.1669 -0.8768 -0.6581 35 1 3.4807 -2.4155 -1.2794 36 1 3.6656 -2.0413 1.3930 37 1 2.1806 -2.7723 0.7132 38 1 3.4652 -1.2161 3.5034 39 1 1.9880 -2.2090 3.5194 40 1 2.9289 -1.9731 6.0337 41 1 2.4047 0.4383 7.4074 42 1 0.9271 -0.5539 7.4322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507292804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:23 Heat of formation + Delta-G solvation = -204.322883 kcal Electronic energy + Delta-G solvation = -29123.573524 eV Core-core repulsion = 24303.258371 eV Total energy + Delta-G solvation = -4820.315153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.70783 -48.21646 -48.18750 -40.57414 -39.39171 -37.27607 -35.36577 -34.13701 -32.22697 -31.14862 -30.82431 -29.46467 -28.44976 -25.23067 -24.04362 -23.12972 -22.67636 -21.35281 -20.17900 -19.18004 -19.09726 -18.95225 -18.31171 -17.47900 -17.16962 -16.41827 -16.15036 -15.98376 -15.65107 -15.16516 -15.00782 -14.73235 -14.66331 -14.60827 -14.33426 -14.32489 -14.08097 -13.78211 -13.56437 -13.48619 -13.37324 -12.90708 -12.64711 -12.47612 -12.33020 -12.10208 -11.79962 -11.62253 -11.17227 -11.05261 -10.85812 -10.62070 -10.33904 -10.27066 -10.02164 -9.77923 -9.77547 -9.36387 -8.96930 -8.39414 -7.05433 -5.83542 -3.14203 1.92063 2.27438 2.33306 2.79104 3.10781 3.16241 3.39526 3.42812 3.44665 3.46568 3.66928 4.19263 4.49654 4.52759 4.58802 4.79339 4.89014 4.93073 5.02137 5.22784 5.32722 5.45785 5.54370 5.61904 5.65092 5.77438 5.92306 6.07918 6.11144 6.27716 6.44338 6.56468 6.61108 6.71426 6.83106 6.90395 7.63353 7.73275 7.79292 8.33452 8.37842 9.45180 9.99830 10.34309 11.38577 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.033726 B = 0.001915 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.020398 B =14614.648096 C =14856.586618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.077 0.923 4 C 0.176 3.824 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.612 5.612 18 C 0.525 3.475 19 O -0.500 6.500 20 C -0.159 4.159 21 C 0.521 3.479 22 O -0.479 6.479 23 N -0.738 5.738 24 C 0.080 3.920 25 C 0.449 3.551 26 F -0.178 7.178 27 F -0.173 7.173 28 F -0.178 7.178 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.406 0.594 41 H 0.115 0.885 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 -11.891 25.000 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.064 3.936 5 H 0.082 0.918 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.027 4.027 17 N -0.348 5.348 18 C 0.311 3.689 19 O -0.373 6.373 20 C -0.201 4.201 21 C 0.306 3.694 22 O -0.349 6.349 23 N -0.397 5.397 24 C -0.045 4.045 25 C 0.394 3.606 26 F -0.160 7.160 27 F -0.155 7.155 28 F -0.160 7.160 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.241 0.759 41 H 0.133 0.867 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.562 -10.617 25.062 27.224 hybrid contribution 0.756 -0.721 -0.660 1.236 sum 0.194 -11.337 24.402 26.908 Atomic orbital electron populations 1.22044 0.94889 1.01541 1.02781 1.21872 0.94379 0.96915 0.84220 0.90484 1.21236 0.93493 0.91637 0.87197 0.91812 1.42344 1.80724 1.09373 1.03104 1.19188 1.39172 0.95251 0.83828 0.90994 1.24779 1.02076 0.95683 0.98190 1.69670 1.52284 1.03194 1.32537 0.86173 0.77357 0.77593 0.84916 1.21648 1.21772 1.20713 1.23557 1.01443 1.01732 0.92948 1.22401 0.94555 0.88320 0.97389 1.48559 1.52768 1.28672 1.04757 1.19389 0.81726 0.85785 0.82031 1.90849 1.38148 1.26049 1.82278 1.21545 1.04771 1.02032 0.91786 1.20104 0.80229 0.84594 0.84493 1.90914 1.34812 1.22803 1.86339 1.45714 1.57946 1.31755 1.04247 1.22405 1.03452 0.97779 0.80891 1.20567 0.76519 0.79326 0.84173 1.93236 1.30249 1.96457 1.96019 1.93233 1.91611 1.84762 1.45874 1.93231 1.87101 1.39374 1.96285 0.91924 0.91179 0.93148 0.77975 0.93355 0.90605 0.90575 0.91436 0.91684 0.85865 0.85916 0.75852 0.86712 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.11 37.16 0.34 -2.23 16 2 C 0.13 2.24 3.21 -66.95 -0.22 2.02 16 3 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 4 C 0.18 3.25 3.11 -66.09 -0.21 3.04 16 5 H 0.06 1.18 7.82 -51.93 -0.41 0.77 16 6 N -0.72 -17.02 5.25 -51.64 -0.27 -17.30 16 7 C -0.24 -6.42 9.98 -15.06 -0.15 -6.57 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 11 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C -0.16 -2.36 6.77 -24.59 -0.17 -2.53 16 16 C 0.10 1.09 6.69 -2.53 -0.02 1.08 16 17 N -0.61 -8.74 3.06 -163.01 -0.50 -9.24 16 18 C 0.53 7.62 7.63 -10.99 -0.08 7.54 16 19 O -0.50 -9.64 13.23 -18.96 -0.25 -9.89 16 20 C -0.16 -1.38 5.19 -29.04 -0.15 -1.53 16 21 C 0.52 5.42 7.82 -10.99 -0.09 5.33 16 22 O -0.48 -7.54 14.18 -18.96 -0.27 -7.81 16 23 N -0.74 -4.79 5.42 -60.29 -0.33 -5.12 16 24 C 0.08 0.48 5.64 -4.04 -0.02 0.46 16 25 C 0.45 2.58 3.11 37.16 0.12 2.70 16 26 F -0.18 -1.15 17.18 2.25 0.04 -1.11 16 27 F -0.17 -1.16 17.32 2.25 0.04 -1.12 16 28 F -0.18 -1.13 17.18 2.25 0.04 -1.09 16 29 H 0.06 1.10 6.89 -51.93 -0.36 0.74 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.39 10.00 7.53 -40.82 -0.31 9.69 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.57 7.48 -51.93 -0.39 0.18 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.12 0.73 7.85 -51.93 -0.41 0.32 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.41 1.55 8.36 -40.82 -0.34 1.20 16 41 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -34.90 365.41 -6.57 -41.47 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.54 Total: 6.81 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.74 Total: 8.92 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.37 Total: -58.36 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.52 Total: -17.70 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.12 Total: -3.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.90 -6.57 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507292804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.856 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds