Wall clock time and date at job start Tue Mar 31 2020 20:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.99830 * 2 1 4 4 C 1.54340 * 109.98864 * 238.96586 * 2 1 3 5 5 H 1.09001 * 110.51418 * 336.97732 * 4 2 1 6 6 N 1.46498 * 111.00065 * 100.12592 * 4 2 1 7 7 C 1.36941 * 120.00047 * 200.23680 * 6 4 2 8 8 H 1.08003 * 119.99780 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00294 * 180.02562 * 7 6 4 10 10 N 1.31628 * 119.99698 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00199 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47564 * 89.99688 * 11 9 7 13 13 H 1.48494 * 109.47311 * 209.99912 * 11 9 7 14 14 H 1.48497 * 109.47244 * 329.99549 * 11 9 7 15 15 C 1.55155 * 103.01841 * 218.66547 * 4 2 1 16 16 C 1.54904 * 101.58212 * 35.30628 * 15 4 2 17 17 N 1.47017 * 109.88524 * 121.09806 * 2 1 3 18 18 C 1.34778 * 125.65243 * 298.39766 * 17 2 1 19 19 O 1.21283 * 119.99532 * 359.71012 * 18 17 2 20 20 C 1.50698 * 120.00411 * 179.71299 * 18 17 2 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 O 1.21283 * 120.00472 * 0.02562 * 21 20 18 23 23 N 1.34777 * 119.99538 * 179.97438 * 21 20 18 24 24 C 1.46499 * 119.99665 * 179.72653 * 23 21 20 25 25 C 1.53004 * 109.47198 * 180.27868 * 24 23 21 26 26 F 1.39906 * 109.47024 * 60.00093 * 25 24 23 27 27 F 1.39898 * 109.47292 * 179.97438 * 25 24 23 28 28 F 1.39897 * 109.46821 * 299.99881 * 25 24 23 29 29 H 1.09000 * 109.46908 * 300.35263 * 1 2 3 30 30 H 1.08998 * 109.46990 * 60.35259 * 1 2 3 31 31 H 1.09003 * 109.47209 * 180.35464 * 1 2 3 32 32 H 0.97000 * 120.00239 * 20.23169 * 6 4 2 33 33 H 0.96996 * 119.99453 * 180.02562 * 10 9 7 34 34 H 1.09001 * 111.00106 * 277.23292 * 15 4 2 35 35 H 1.09000 * 111.00111 * 153.38773 * 15 4 2 36 36 H 1.09003 * 110.36580 * 204.14726 * 16 15 4 37 37 H 1.09004 * 110.46163 * 81.88093 * 16 15 4 38 38 H 1.09003 * 109.46601 * 59.99956 * 20 18 17 39 39 H 1.08993 * 109.46922 * 300.00256 * 20 18 17 40 40 H 0.97001 * 120.00485 * 0.02562 * 23 21 20 41 41 H 1.09009 * 109.47454 * 300.27637 * 24 23 21 42 42 H 1.08998 * 109.47492 * 60.27932 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1939 -2.2893 7 6 2.5623 -0.2274 -3.5885 8 1 2.3420 -1.2540 -3.8416 9 6 2.9469 0.6647 -4.5800 10 7 3.2159 1.9157 -4.2714 11 14 3.0830 0.0898 -6.3520 12 1 1.7780 0.2783 -7.0352 13 1 4.1265 0.8822 -7.0508 14 1 3.4526 -1.3481 -6.3790 15 6 3.2863 -1.5183 -0.6916 16 6 2.8099 -1.8825 0.7366 17 7 2.0301 -0.7141 1.1838 18 6 1.8075 -0.3622 2.4657 19 8 1.1476 0.6236 2.7180 20 6 2.3785 -1.1936 3.5854 21 6 1.9875 -0.5894 4.9094 22 8 1.3113 0.4170 4.9408 23 7 2.3884 -1.1680 6.0587 24 6 2.0134 -0.5773 7.3458 25 6 2.5973 -1.4186 8.4826 26 9 3.9917 -1.4485 8.3719 27 9 2.2397 -0.8542 9.7117 28 9 2.0951 -2.7219 8.4036 29 1 -0.3633 0.5193 0.8868 30 1 -0.3633 0.5083 -0.8931 31 1 -0.3634 -1.0277 0.0064 32 1 2.6612 1.1158 -2.0619 33 1 3.4843 2.5391 -4.9643 34 1 4.1669 -0.8768 -0.6581 35 1 3.4807 -2.4155 -1.2794 36 1 3.6656 -2.0413 1.3930 37 1 2.1806 -2.7723 0.7132 38 1 3.4652 -1.2161 3.5034 39 1 1.9880 -2.2090 3.5194 40 1 2.9289 -1.9731 6.0337 41 1 2.4047 0.4383 7.4074 42 1 0.9271 -0.5539 7.4322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507292804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:18 Heat of formation + Delta-G solvation = -229.489500 kcal Electronic energy + Delta-G solvation = -29124.664830 eV Core-core repulsion = 24303.258371 eV Total energy + Delta-G solvation = -4821.406459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -51.20101 -48.71933 -48.67446 -41.55590 -40.41439 -38.52892 -36.12719 -35.82948 -33.59187 -32.52777 -31.90801 -30.70303 -29.37201 -26.81856 -24.95020 -24.52519 -23.73025 -22.20283 -21.48634 -20.17643 -19.66439 -19.49011 -19.10058 -19.00679 -18.30882 -17.43488 -17.04314 -16.87973 -16.59887 -16.31260 -15.87021 -15.59762 -15.46631 -15.34795 -15.25573 -15.10529 -14.84158 -14.82524 -14.70698 -14.56933 -14.52634 -14.17395 -13.85758 -13.55337 -13.30469 -13.09578 -12.98117 -12.91985 -12.82519 -12.61191 -12.47775 -12.15161 -12.04007 -11.68698 -11.48946 -11.24394 -10.88896 -10.51091 -10.42084 -9.57047 -9.00384 -7.92548 -5.22388 1.33801 1.50170 1.51826 1.53771 1.59938 1.72408 1.73670 2.19256 2.59054 2.63917 2.95537 3.16134 3.35731 3.42837 3.67431 3.83094 3.88777 4.09054 4.11306 4.22987 4.31401 4.35469 4.40812 4.45147 4.49251 4.57481 4.70212 4.82721 4.99127 5.03857 5.09161 5.25099 5.30310 5.40187 5.52571 5.58094 6.27527 6.28330 6.66012 7.09725 7.31877 7.34066 8.07255 8.30282 9.31129 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.033726 B = 0.001915 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.020398 B =14614.648096 C =14856.586618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.135 3.865 3 H 0.038 0.962 4 C 0.168 3.832 5 H 0.069 0.931 6 N -0.732 5.732 7 C -0.232 4.232 8 H 0.085 0.915 9 C -0.080 4.080 10 N -0.973 5.973 11 Si 0.974 3.026 12 H -0.291 1.291 13 H -0.301 1.301 14 H -0.263 1.263 15 C -0.149 4.149 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.515 3.485 19 O -0.558 6.558 20 C -0.146 4.146 21 C 0.520 3.480 22 O -0.542 6.542 23 N -0.719 5.719 24 C 0.079 3.921 25 C 0.460 3.540 26 F -0.180 7.180 27 F -0.178 7.178 28 F -0.179 7.179 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.369 0.631 33 H 0.249 0.751 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.423 0.577 41 H 0.114 0.886 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 -15.764 26.228 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.056 0.944 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.371 5.371 7 C -0.364 4.364 8 H 0.103 0.897 9 C -0.272 4.272 10 N -0.624 5.624 11 Si 0.803 3.197 12 H -0.218 1.218 13 H -0.228 1.228 14 H -0.187 1.187 15 C -0.189 4.189 16 C -0.018 4.018 17 N -0.346 5.346 18 C 0.304 3.696 19 O -0.435 6.435 20 C -0.187 4.187 21 C 0.306 3.694 22 O -0.417 6.417 23 N -0.377 5.377 24 C -0.046 4.046 25 C 0.405 3.595 26 F -0.161 7.161 27 F -0.160 7.160 28 F -0.160 7.160 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.201 0.799 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.181 0.819 39 H 0.187 0.813 40 H 0.261 0.739 41 H 0.132 0.868 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.368 -14.627 26.347 30.137 hybrid contribution 0.452 0.439 -0.930 1.123 sum 0.820 -14.188 25.418 29.121 Atomic orbital electron populations 1.21920 0.94653 1.02380 1.01215 1.21526 0.94508 0.95329 0.85670 0.94405 1.21460 0.95245 0.91062 0.86343 0.91336 1.42548 1.81146 1.09598 1.03782 1.19621 1.36484 0.95481 0.84823 0.89727 1.25605 1.03379 0.95929 1.02262 1.69846 1.54777 1.04492 1.33257 0.85127 0.76673 0.77801 0.80075 1.21816 1.22776 1.18747 1.23368 0.98646 1.01097 0.95838 1.22621 0.96244 0.87715 0.95201 1.48619 1.52841 1.29161 1.04015 1.20443 0.80781 0.85559 0.82824 1.90840 1.40721 1.28790 1.83106 1.21607 1.06783 1.02415 0.87910 1.20445 0.79287 0.83799 0.85822 1.90912 1.37892 1.25681 1.87210 1.45482 1.56980 1.31745 1.03502 1.22429 1.03693 0.97849 0.80675 1.20383 0.76254 0.79064 0.83761 1.93236 1.30441 1.96455 1.96002 1.93227 1.91662 1.84880 1.46221 1.93233 1.87107 1.39419 1.96263 0.93399 0.92810 0.90957 0.79898 0.94209 0.92720 0.89248 0.87005 0.88346 0.81943 0.81341 0.73854 0.86759 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 9.11 71.98 0.66 -4.19 16 2 C 0.13 4.69 3.21 45.35 0.15 4.83 16 3 H 0.04 1.61 7.70 -2.39 -0.02 1.59 16 4 C 0.17 6.08 3.11 46.18 0.14 6.23 16 5 H 0.07 2.42 7.82 -2.39 -0.02 2.40 16 6 N -0.73 -35.53 5.25 -317.30 -1.67 -37.20 16 7 C -0.23 -12.26 9.98 84.03 0.84 -11.42 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 10 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 11 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 14 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 15 C -0.15 -4.12 6.77 31.98 0.22 -3.90 16 16 C 0.10 1.84 6.69 86.85 0.58 2.42 16 17 N -0.61 -16.09 3.06 -788.04 -2.41 -18.50 16 18 C 0.52 14.01 7.63 87.66 0.67 14.68 16 19 O -0.56 -21.93 13.23 20.40 0.27 -21.66 16 20 C -0.15 -1.89 5.19 29.10 0.15 -1.74 16 21 C 0.52 9.63 7.82 87.66 0.69 10.32 16 22 O -0.54 -17.11 14.18 20.40 0.29 -16.82 16 23 N -0.72 -7.25 5.42 -463.05 -2.51 -9.76 16 24 C 0.08 0.82 5.64 86.38 0.49 1.30 16 25 C 0.46 4.37 3.11 71.98 0.22 4.60 16 26 F -0.18 -1.91 17.18 44.97 0.77 -1.13 16 27 F -0.18 -2.14 17.32 44.97 0.78 -1.36 16 28 F -0.18 -1.82 17.18 44.97 0.77 -1.04 16 29 H 0.05 1.75 6.89 -2.39 -0.02 1.73 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.37 20.11 7.53 -92.71 -0.70 19.41 16 33 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 1.11 7.48 -2.39 -0.02 1.09 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.16 0.90 7.85 -2.39 -0.02 0.88 16 39 H 0.17 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.42 1.44 8.36 -92.71 -0.78 0.67 16 41 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -82.33 365.41 3.48 -78.85 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.39 Total: 21.63 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 5.26 Total: 19.10 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -6.31 Total: -124.60 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: 0.56 Total: -38.48 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 2.32 Total: -3.53 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -82.33 3.48 -78.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507292804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.635 kcal (2) G-P(sol) polarization free energy of solvation -82.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds