Wall clock time and date at job start Tue Mar 31 2020 20:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46625 * 2 1 4 4 N 1.46497 * 109.47007 * 119.99900 * 2 1 3 5 5 C 1.36937 * 120.00420 * 274.99832 * 4 2 1 6 6 H 1.08006 * 119.99314 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00141 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00128 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 89.99484 * 9 7 5 11 11 H 1.48504 * 109.46932 * 209.99817 * 9 7 5 12 12 H 1.48506 * 109.46787 * 329.99672 * 9 7 5 13 13 C 1.52999 * 109.46913 * 240.00010 * 2 1 3 14 14 C 1.53036 * 109.46207 * 180.02562 * 13 2 1 15 15 C 1.53183 * 109.31640 * 178.60128 * 14 13 2 16 16 N 1.46930 * 108.76633 * 54.65213 * 15 14 13 17 17 C 1.34780 * 120.62827 * 126.36055 * 16 15 14 18 18 O 1.21520 * 120.00159 * 352.35685 * 17 16 15 19 19 C 1.48111 * 119.99566 * 172.35873 * 17 16 15 20 20 C 1.39351 * 119.70442 * 170.57329 * 19 17 16 21 21 C 1.38527 * 119.07164 * 180.02562 * 20 19 17 22 22 C 1.38759 * 118.48430 * 0.02562 * 21 20 19 23 23 Cl 1.73606 * 120.34028 * 179.97438 * 22 21 20 24 24 C 1.38722 * 119.32408 * 359.97438 * 22 21 20 25 25 N 1.31495 * 120.87674 * 359.72864 * 24 22 21 26 26 C 1.46926 * 118.74067 * 306.38848 * 16 15 14 27 27 C 1.53044 * 109.45840 * 59.97260 * 13 2 1 28 28 H 1.09001 * 109.46945 * 300.00031 * 1 2 3 29 29 H 1.08993 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47254 * 59.99804 * 1 2 3 31 31 H 0.97002 * 120.00053 * 95.00238 * 4 2 1 32 32 H 0.96994 * 120.00019 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.45948 * 300.00180 * 13 2 1 34 34 H 1.09004 * 109.49372 * 298.56966 * 14 13 2 35 35 H 1.09002 * 109.49726 * 58.65732 * 14 13 2 36 36 H 1.09003 * 109.60030 * 294.86803 * 15 14 13 37 37 H 1.09001 * 109.70704 * 174.50570 * 15 14 13 38 38 H 1.07999 * 120.46145 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.75662 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.56107 * 180.02562 * 24 22 21 41 41 H 1.09003 * 109.58709 * 293.82087 * 26 16 15 42 42 H 1.09003 * 109.70441 * 173.46035 * 26 16 15 43 43 H 1.08996 * 109.49729 * 301.33237 * 27 13 2 44 44 H 1.08994 * 109.49635 * 61.40340 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6124 -0.6618 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.5225 0.1778 5.8863 11 1 3.8952 -0.3227 5.9139 12 1 3.0941 1.6955 4.8339 13 6 2.0400 -0.7213 -1.2493 14 6 3.5704 -0.7217 -1.2488 15 6 4.0772 -1.4748 -2.4826 16 7 3.4746 -0.8770 -3.6819 17 6 4.2482 -0.4574 -4.7027 18 8 5.4573 -0.4425 -4.5825 19 6 3.6245 -0.0145 -5.9710 20 6 4.4061 0.6006 -6.9470 21 6 3.8091 1.0101 -8.1281 22 6 2.4489 0.7907 -8.2928 23 17 1.6514 1.2851 -9.7534 24 6 1.7327 0.1723 -7.2784 25 7 2.3270 -0.2113 -6.1698 26 6 2.0128 -0.7447 -3.7470 27 6 1.5291 0.0000 -2.4986 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1526 32 1 3.2486 -2.3961 4.2418 33 1 1.6765 -1.7489 -1.2491 34 1 3.9344 0.3054 -1.2741 35 1 3.9337 -1.2147 -0.3471 36 1 3.7903 -2.5242 -2.4140 37 1 5.1628 -1.3960 -2.5411 38 1 5.4625 0.7558 -6.7849 39 1 4.3891 1.4892 -8.9029 40 1 0.6740 -0.0007 -7.4027 41 1 1.5574 -1.7345 -3.7813 42 1 1.7339 -0.1830 -4.6385 43 1 0.4394 0.0206 -2.4868 44 1 1.9122 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567633130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:04 Heat of formation + Delta-G solvation = 18.528584 kcal Electronic energy + Delta-G solvation = -26707.483885 eV Core-core repulsion = 22879.398203 eV Total energy + Delta-G solvation = -3828.085683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28367 -39.56829 -37.89000 -37.19775 -35.46570 -33.39154 -32.71695 -31.96851 -30.73648 -30.60289 -28.20408 -26.03227 -24.52971 -24.20184 -23.63318 -22.64777 -21.34557 -19.94718 -19.40067 -17.84391 -17.60360 -17.05501 -16.81053 -15.91287 -15.68513 -15.23216 -14.93259 -14.45970 -14.27478 -14.12409 -13.85886 -13.72310 -13.59049 -13.38916 -12.95597 -12.66382 -12.58206 -12.43775 -12.10616 -12.00183 -11.81295 -11.56324 -11.09743 -10.95297 -10.85946 -10.71246 -10.52874 -10.46952 -10.31759 -10.15153 -10.06632 -9.79284 -9.62705 -9.53519 -9.15216 -8.86939 -8.53229 -6.90684 -5.73222 -3.00839 -0.01022 0.53663 1.39424 2.36726 2.83684 3.31211 3.45232 3.50686 3.52047 3.65677 4.08452 4.17532 4.31004 4.50653 4.61824 5.05280 5.09926 5.16721 5.21816 5.25315 5.28599 5.40987 5.53523 5.58474 5.68188 5.76244 5.81971 5.95656 6.01044 6.14039 6.16594 6.24708 6.27946 6.40083 6.48333 6.53088 6.63632 6.73308 6.88117 6.99574 7.03792 7.17465 7.38494 7.73677 7.99354 8.45914 9.56954 10.15795 10.50521 11.49536 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002262 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.989598 B =12376.835085 C =13014.065299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.178 3.822 3 H 0.043 0.957 4 N -0.723 5.723 5 C -0.233 4.233 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.091 4.091 14 C -0.120 4.120 15 C 0.107 3.893 16 N -0.581 5.581 17 C 0.565 3.435 18 O -0.537 6.537 19 C 0.090 3.910 20 C -0.099 4.099 21 C -0.069 4.069 22 C -0.073 4.073 23 Cl -0.048 7.048 24 C 0.108 3.892 25 N -0.431 5.431 26 C 0.074 3.926 27 C -0.130 4.130 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.383 0.617 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.065 0.935 42 H 0.140 0.860 43 H 0.077 0.923 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 4.531 -28.062 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 H 0.061 0.939 4 N -0.364 5.364 5 C -0.364 4.364 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.110 4.110 14 C -0.158 4.158 15 C -0.014 4.014 16 N -0.312 5.312 17 C 0.351 3.649 18 O -0.414 6.414 19 C -0.047 4.047 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.102 4.102 23 Cl -0.019 7.019 24 C -0.051 4.051 25 N -0.142 5.142 26 C -0.048 4.048 27 C -0.168 4.168 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.177 0.823 39 H 0.171 0.829 40 H 0.191 0.809 41 H 0.083 0.917 42 H 0.156 0.844 43 H 0.095 0.905 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.231 4.275 -27.281 27.704 hybrid contribution 0.364 0.573 0.288 0.738 sum -1.867 4.848 -26.993 27.488 Atomic orbital electron populations 1.22489 0.99581 1.00713 0.99758 1.20221 0.91537 0.95295 0.86163 0.93851 1.42417 1.78071 1.10631 1.05287 1.19219 1.36050 0.93771 0.87402 0.91389 1.24708 1.02437 0.95983 0.97955 1.69650 1.51219 1.08622 1.28758 0.86234 0.77232 0.78815 0.84186 1.21868 1.21852 1.20870 1.21404 0.95036 0.99887 0.94701 1.21866 0.95843 1.00978 0.97132 1.21852 0.99352 0.96682 0.83523 1.48043 1.08126 1.58321 1.16681 1.17778 0.86186 0.78337 0.82645 1.90792 1.13424 1.55341 1.81820 1.21472 0.89814 0.97597 0.95816 1.22157 1.02532 0.95495 0.91787 1.21605 0.92752 0.97317 0.97905 1.22359 0.94463 1.02356 0.91068 1.98410 1.79588 1.89700 1.34185 1.23069 1.01188 0.93610 0.87264 1.67901 1.09912 1.16992 1.19440 1.22999 0.78043 1.02202 1.01580 1.22062 1.01051 0.99462 0.94242 0.93115 0.93611 0.94328 0.78340 0.93615 0.91452 0.92054 0.88974 0.91226 0.89226 0.82319 0.82883 0.80868 0.91669 0.84387 0.90453 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.14 37.16 0.34 -2.58 16 2 C 0.18 3.43 2.47 -67.93 -0.17 3.26 16 3 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.61 4.41 -53.42 -0.24 -17.84 16 5 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 9 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C -0.09 -1.44 1.79 -90.58 -0.16 -1.60 16 14 C -0.12 -1.97 5.22 -26.62 -0.14 -2.11 16 15 C 0.11 1.56 6.44 -3.71 -0.02 1.53 16 16 N -0.58 -7.86 2.97 -173.78 -0.52 -8.37 16 17 C 0.56 7.81 7.65 -12.21 -0.09 7.71 16 18 O -0.54 -8.79 15.79 5.35 0.08 -8.70 16 19 C 0.09 0.98 6.58 -83.01 -0.55 0.43 16 20 C -0.10 -0.85 9.63 -39.06 -0.38 -1.22 16 21 C -0.07 -0.45 9.97 -39.28 -0.39 -0.84 16 22 C -0.07 -0.49 6.35 -39.21 -0.25 -0.74 16 23 Cl -0.05 -0.28 28.99 -51.86 -1.50 -1.78 16 24 C 0.11 0.77 10.98 -17.52 -0.19 0.58 16 25 N -0.43 -4.08 6.13 -9.77 -0.06 -4.14 16 26 C 0.07 0.87 5.88 -3.71 -0.02 0.85 16 27 C -0.13 -1.67 5.04 -26.61 -0.13 -1.80 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 31 H 0.38 9.91 7.58 -40.82 -0.31 9.60 16 32 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.75 7.41 -51.93 -0.38 1.37 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 38 H 0.16 1.27 7.67 -52.49 -0.40 0.87 16 39 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 1.48 4.02 -84.19 -0.34 1.14 16 43 H 0.08 0.91 6.36 -51.93 -0.33 0.58 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -31.53 368.57 -9.61 -41.14 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.23 Total: 7.55 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.40 Total: -3.60 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.09 Total: -57.63 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.50 Total: -1.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.53 -9.61 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.670 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds