Wall clock time and date at job start Tue Mar 31 2020 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46625 * 2 1 4 4 N 1.46497 * 109.47007 * 119.99900 * 2 1 3 5 5 C 1.36937 * 120.00420 * 274.99832 * 4 2 1 6 6 H 1.08006 * 119.99314 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00141 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00128 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 89.99484 * 9 7 5 11 11 H 1.48504 * 109.46932 * 209.99817 * 9 7 5 12 12 H 1.48506 * 109.46787 * 329.99672 * 9 7 5 13 13 C 1.52999 * 109.46913 * 240.00010 * 2 1 3 14 14 C 1.53036 * 109.46207 * 180.02562 * 13 2 1 15 15 C 1.53183 * 109.31640 * 178.60128 * 14 13 2 16 16 N 1.46930 * 108.76633 * 54.65213 * 15 14 13 17 17 C 1.34780 * 120.62827 * 126.36055 * 16 15 14 18 18 O 1.21520 * 120.00159 * 352.35685 * 17 16 15 19 19 C 1.48111 * 119.99566 * 172.35873 * 17 16 15 20 20 C 1.39351 * 119.70442 * 170.57329 * 19 17 16 21 21 C 1.38527 * 119.07164 * 180.02562 * 20 19 17 22 22 C 1.38759 * 118.48430 * 0.02562 * 21 20 19 23 23 Cl 1.73606 * 120.34028 * 179.97438 * 22 21 20 24 24 C 1.38722 * 119.32408 * 359.97438 * 22 21 20 25 25 N 1.31495 * 120.87674 * 359.72864 * 24 22 21 26 26 C 1.46926 * 118.74067 * 306.38848 * 16 15 14 27 27 C 1.53044 * 109.45840 * 59.97260 * 13 2 1 28 28 H 1.09001 * 109.46945 * 300.00031 * 1 2 3 29 29 H 1.08993 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47254 * 59.99804 * 1 2 3 31 31 H 0.97002 * 120.00053 * 95.00238 * 4 2 1 32 32 H 0.96994 * 120.00019 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.45948 * 300.00180 * 13 2 1 34 34 H 1.09004 * 109.49372 * 298.56966 * 14 13 2 35 35 H 1.09002 * 109.49726 * 58.65732 * 14 13 2 36 36 H 1.09003 * 109.60030 * 294.86803 * 15 14 13 37 37 H 1.09001 * 109.70704 * 174.50570 * 15 14 13 38 38 H 1.07999 * 120.46145 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.75662 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.56107 * 180.02562 * 24 22 21 41 41 H 1.09003 * 109.58709 * 293.82087 * 26 16 15 42 42 H 1.09003 * 109.70441 * 173.46035 * 26 16 15 43 43 H 1.08996 * 109.49729 * 301.33237 * 27 13 2 44 44 H 1.08994 * 109.49635 * 61.40340 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6124 -0.6618 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.5225 0.1778 5.8863 11 1 3.8952 -0.3227 5.9139 12 1 3.0941 1.6955 4.8339 13 6 2.0400 -0.7213 -1.2493 14 6 3.5704 -0.7217 -1.2488 15 6 4.0772 -1.4748 -2.4826 16 7 3.4746 -0.8770 -3.6819 17 6 4.2482 -0.4574 -4.7027 18 8 5.4573 -0.4425 -4.5825 19 6 3.6245 -0.0145 -5.9710 20 6 4.4061 0.6006 -6.9470 21 6 3.8091 1.0101 -8.1281 22 6 2.4489 0.7907 -8.2928 23 17 1.6514 1.2851 -9.7534 24 6 1.7327 0.1723 -7.2784 25 7 2.3270 -0.2113 -6.1698 26 6 2.0128 -0.7447 -3.7470 27 6 1.5291 0.0000 -2.4986 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1526 32 1 3.2486 -2.3961 4.2418 33 1 1.6765 -1.7489 -1.2491 34 1 3.9344 0.3054 -1.2741 35 1 3.9337 -1.2147 -0.3471 36 1 3.7903 -2.5242 -2.4140 37 1 5.1628 -1.3960 -2.5411 38 1 5.4625 0.7558 -6.7849 39 1 4.3891 1.4892 -8.9029 40 1 0.6740 -0.0007 -7.4027 41 1 1.5574 -1.7345 -3.7813 42 1 1.7339 -0.1830 -4.6385 43 1 0.4394 0.0206 -2.4868 44 1 1.9122 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567633130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:02 Heat of formation + Delta-G solvation = 0.286667 kcal Electronic energy + Delta-G solvation = -26708.274914 eV Core-core repulsion = 22879.398203 eV Total energy + Delta-G solvation = -3828.876712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.08041 -40.52243 -39.14775 -37.72223 -36.94169 -34.71233 -33.83999 -32.84758 -32.24000 -31.69279 -29.88882 -27.14325 -25.90500 -24.97744 -24.92609 -23.83512 -22.51979 -21.28840 -20.64956 -19.22374 -18.55207 -18.27371 -17.54255 -16.92989 -16.78386 -16.59445 -15.94230 -15.69205 -15.50477 -15.27529 -15.12174 -15.02633 -14.57696 -14.55030 -14.16216 -14.01153 -13.58402 -13.55769 -13.29298 -13.12022 -12.93216 -12.83754 -12.76046 -12.33597 -12.29189 -12.17451 -12.08504 -11.86872 -11.49884 -11.46667 -11.35586 -11.25924 -11.03885 -10.87196 -10.17323 -10.04472 -9.64229 -8.94560 -7.91115 -5.17395 -0.68798 -0.01827 0.87105 1.46422 1.47388 1.50149 1.55507 1.85299 2.56108 2.57567 2.90647 3.42342 3.47240 3.59886 3.72677 3.81506 3.84739 3.87407 3.94882 4.18575 4.29476 4.37939 4.49281 4.57638 4.59240 4.66538 4.69362 4.79031 4.82394 4.86324 4.96028 5.05275 5.07585 5.10855 5.17378 5.25745 5.28213 5.42917 5.50806 5.56840 5.69951 5.71268 6.26484 6.31939 6.45966 6.96245 7.37830 8.16712 8.39263 9.32278 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002262 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.989598 B =12376.835085 C =13014.065299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.172 3.828 3 H 0.032 0.968 4 N -0.733 5.733 5 C -0.230 4.230 6 H 0.070 0.930 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.273 1.273 13 C -0.081 4.081 14 C -0.111 4.111 15 C 0.115 3.885 16 N -0.585 5.585 17 C 0.560 3.440 18 O -0.573 6.573 19 C 0.068 3.932 20 C -0.100 4.100 21 C -0.060 4.060 22 C -0.068 4.068 23 Cl -0.034 7.034 24 C 0.111 3.889 25 N -0.442 5.442 26 C 0.077 3.923 27 C -0.121 4.121 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.372 0.628 32 H 0.249 0.751 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.201 0.799 41 H 0.075 0.925 42 H 0.158 0.842 43 H 0.099 0.901 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 5.745 -30.840 31.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.064 3.936 3 H 0.050 0.950 4 N -0.373 5.373 5 C -0.362 4.362 6 H 0.088 0.912 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.796 3.204 10 H -0.216 1.216 11 H -0.224 1.224 12 H -0.198 1.198 13 C -0.100 4.100 14 C -0.149 4.149 15 C -0.007 4.007 16 N -0.315 5.315 17 C 0.348 3.652 18 O -0.453 6.453 19 C -0.068 4.068 20 C -0.121 4.121 21 C -0.086 4.086 22 C -0.097 4.097 23 Cl -0.006 7.006 24 C -0.049 4.049 25 N -0.154 5.154 26 C -0.044 4.044 27 C -0.159 4.159 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.204 0.796 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.176 0.824 39 H 0.198 0.802 40 H 0.218 0.782 41 H 0.093 0.907 42 H 0.173 0.827 43 H 0.117 0.883 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.015 5.528 -30.097 30.863 hybrid contribution 0.862 0.261 0.970 1.324 sum -3.153 5.789 -29.127 29.863 Atomic orbital electron populations 1.22335 0.97566 1.00905 1.00671 1.20464 0.92818 0.94537 0.85801 0.95034 1.42595 1.78348 1.10238 1.06124 1.19550 1.34267 0.93917 0.88493 0.91229 1.25455 1.03439 0.96900 1.01158 1.69800 1.52976 1.10043 1.29158 0.85244 0.76807 0.78000 0.80375 1.21572 1.22421 1.19796 1.21293 0.94198 0.99878 0.94619 1.21695 0.96612 0.99850 0.96777 1.21630 0.98707 0.96966 0.83418 1.48122 1.08966 1.58217 1.16173 1.18277 0.85874 0.77489 0.83580 1.90760 1.15004 1.56826 1.82689 1.21059 0.90832 0.99906 0.95032 1.22200 1.02501 0.95325 0.92084 1.21869 0.92947 0.96286 0.97485 1.22450 0.94559 1.01377 0.91290 1.98426 1.79333 1.89449 1.33345 1.23488 1.02254 0.92680 0.86489 1.67667 1.09262 1.17592 1.20832 1.23165 0.76758 1.02910 1.01557 1.22020 1.02201 0.98795 0.92880 0.95158 0.93736 0.90417 0.79566 0.94247 0.91403 0.93537 0.92255 0.90255 0.90498 0.82384 0.80180 0.78186 0.90713 0.82652 0.88288 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 9.14 71.98 0.66 -4.59 16 2 C 0.17 6.62 2.47 44.99 0.11 6.73 16 3 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 4 N -0.73 -36.52 4.41 -322.94 -1.42 -37.95 16 5 C -0.23 -12.83 9.93 84.03 0.83 -12.00 16 6 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 7 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 8 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 9 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 C -0.08 -2.52 1.79 -10.77 -0.02 -2.54 16 14 C -0.11 -3.79 5.22 30.67 0.16 -3.63 16 15 C 0.12 3.44 6.44 86.36 0.56 3.99 16 16 N -0.58 -15.61 2.97 -821.99 -2.44 -18.06 16 17 C 0.56 15.49 7.65 86.86 0.66 16.15 16 18 O -0.57 -19.34 15.79 -3.78 -0.06 -19.40 16 19 C 0.07 1.38 6.58 41.90 0.28 1.66 16 20 C -0.10 -1.57 9.63 22.61 0.22 -1.35 16 21 C -0.06 -0.60 9.97 22.46 0.22 -0.38 16 22 C -0.07 -0.68 6.35 22.51 0.14 -0.53 16 23 Cl -0.03 -0.29 28.99 -2.72 -0.08 -0.37 16 24 C 0.11 1.21 10.98 84.86 0.93 2.15 16 25 N -0.44 -7.32 6.13 -184.82 -1.13 -8.45 16 26 C 0.08 1.66 5.88 86.36 0.51 2.17 16 27 C -0.12 -2.86 5.04 30.67 0.15 -2.70 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 2.01 6.40 -2.39 -0.02 1.99 16 31 H 0.37 19.95 7.58 -92.71 -0.70 19.25 16 32 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.06 2.41 7.41 -2.39 -0.02 2.39 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.49 7.00 -2.39 -0.02 2.47 16 38 H 0.16 2.44 7.67 -2.91 -0.02 2.42 16 39 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 40 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.16 2.92 4.02 -66.09 -0.27 2.65 16 43 H 0.10 1.95 6.36 -2.39 -0.02 1.94 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.05 368.57 3.13 -66.92 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.07 Total: 26.57 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.89 Total: 1.11 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -4.72 Total: -123.84 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.06 Total: -19.40 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -70.05 3.13 -66.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.206 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds