Wall clock time and date at job start Tue Mar 31 2020 20:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.47204 * 2 1 4 4 N 1.46497 * 109.47362 * 239.99391 * 2 1 3 5 5 C 1.36933 * 119.99896 * 84.72971 * 4 2 1 6 6 H 1.07996 * 120.00208 * 0.27009 * 5 4 2 7 7 C 1.38814 * 120.00012 * 180.27557 * 5 4 2 8 8 N 1.31621 * 120.00130 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99823 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47418 * 90.00344 * 9 7 5 11 11 H 1.48504 * 109.47165 * 209.99891 * 9 7 5 12 12 H 1.48497 * 109.47213 * 330.00207 * 9 7 5 13 13 C 1.53008 * 109.47073 * 119.99219 * 2 1 3 14 14 C 1.53039 * 109.45762 * 60.06969 * 13 2 1 15 15 C 1.53189 * 109.31178 * 178.61446 * 14 13 2 16 16 N 1.46932 * 108.77500 * 54.63625 * 15 14 13 17 17 C 1.34772 * 120.62912 * 126.37001 * 16 15 14 18 18 O 1.21525 * 120.00293 * 352.35440 * 17 16 15 19 19 C 1.48116 * 119.99779 * 172.35643 * 17 16 15 20 20 C 1.39351 * 119.70646 * 170.56934 * 19 17 16 21 21 C 1.38522 * 119.07577 * 179.97438 * 20 19 17 22 22 C 1.38770 * 118.47562 * 0.02562 * 21 20 19 23 23 Cl 1.73604 * 120.33176 * 179.97438 * 22 21 20 24 24 C 1.38711 * 119.32626 * 359.97438 * 22 21 20 25 25 N 1.31486 * 120.88347 * 359.72129 * 24 22 21 26 26 C 1.46922 * 118.73890 * 306.38972 * 16 15 14 27 27 C 1.53043 * 109.45945 * 300.00439 * 13 2 1 28 28 H 1.08997 * 109.46963 * 300.00862 * 1 2 3 29 29 H 1.09004 * 109.46821 * 60.00500 * 1 2 3 30 30 H 1.08997 * 109.46910 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99650 * 264.99764 * 4 2 1 32 32 H 0.97000 * 119.99846 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.45915 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.49733 * 298.56827 * 14 13 2 35 35 H 1.08998 * 109.49857 * 58.66094 * 14 13 2 36 36 H 1.08994 * 109.58880 * 294.84858 * 15 14 13 37 37 H 1.09002 * 109.70148 * 174.49288 * 15 14 13 38 38 H 1.08002 * 120.45929 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.75853 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.55773 * 180.02562 * 24 22 21 41 41 H 1.08997 * 109.59003 * 293.82620 * 26 16 15 42 42 H 1.09003 * 109.70709 * 173.46363 * 26 16 15 43 43 H 1.09002 * 109.49261 * 301.33535 * 27 13 2 44 44 H 1.08993 * 109.49589 * 61.39810 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1439 -0.0091 -2.3770 6 1 1.8871 1.0388 -2.4257 7 6 2.6013 -0.6649 -3.5117 8 7 2.7215 -0.0099 -4.6470 9 14 3.0461 -2.4772 -3.4275 10 1 1.8475 -3.2963 -3.7401 11 1 4.1168 -2.7705 -4.4138 12 1 3.5276 -2.8057 -2.0617 13 6 2.0400 -0.7211 1.2494 14 6 1.5312 -2.1644 1.2484 15 6 2.0720 -2.8931 2.4826 16 7 1.7085 -2.1260 3.6818 17 6 1.0550 -2.7158 4.7024 18 8 0.6384 -3.8510 4.5820 19 6 0.8447 -1.9803 5.9707 20 6 0.0041 -2.5126 6.9464 21 6 -0.1828 -1.8140 8.1279 22 6 0.4777 -0.6049 8.2932 23 17 0.2776 0.3108 9.7545 24 6 1.2995 -0.1355 7.2791 25 7 1.4631 -0.8229 6.1703 26 6 2.0705 -0.7035 3.7471 27 6 1.5296 0.0006 2.4987 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 2.2491 -1.6318 -1.1523 32 1 3.0414 -0.4681 -5.4398 33 1 3.1300 -0.7206 1.2495 34 1 0.4414 -2.1660 1.2734 35 1 1.8755 -2.6710 0.3468 36 1 3.1569 -2.9719 2.4142 37 1 1.6361 -3.8905 2.5408 38 1 -0.4939 -3.4571 6.7840 39 1 -0.8279 -2.2016 8.9025 40 1 1.8158 0.8049 7.4041 41 1 3.1553 -0.6037 3.7817 42 1 1.6334 -0.2535 4.6386 43 1 1.8731 1.0351 2.4869 44 1 0.4400 -0.0208 2.5116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567633131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:07 Heat of formation + Delta-G solvation = 25.061599 kcal Electronic energy + Delta-G solvation = -26866.437922 eV Core-core repulsion = 23038.635532 eV Total energy + Delta-G solvation = -3827.802390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36325 -39.71133 -38.12157 -37.24323 -35.64270 -33.45534 -32.77440 -32.00850 -31.00505 -30.65825 -28.64049 -26.01942 -24.63814 -24.40429 -23.57474 -22.92482 -21.53739 -20.33281 -18.82600 -17.95243 -17.66637 -17.44321 -16.91408 -16.01164 -15.76071 -15.32136 -14.86452 -14.69980 -14.48173 -14.30036 -14.12896 -13.89823 -13.57277 -13.30335 -13.08011 -12.86953 -12.72748 -12.47421 -12.38181 -12.07312 -11.83746 -11.60875 -11.40931 -11.31272 -10.89775 -10.67558 -10.58045 -10.55161 -10.40390 -10.31755 -10.16823 -9.75404 -9.60169 -9.56701 -9.25145 -8.90851 -8.66241 -7.23500 -5.74557 -3.09146 -0.07149 0.48220 1.35101 2.28613 2.72576 3.23835 3.38077 3.40894 3.46553 3.58709 4.03376 4.10622 4.25119 4.44235 4.60930 4.92158 4.96619 5.05859 5.08228 5.15138 5.20231 5.27119 5.39944 5.51743 5.54729 5.56651 5.67454 5.72706 5.90382 5.95175 6.05570 6.07464 6.17763 6.23594 6.25259 6.39604 6.49044 6.60330 6.67509 6.84991 6.96410 7.10291 7.27224 7.88687 8.03046 8.45012 9.24204 9.96928 10.17149 11.44081 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.002386 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.916462 B =11730.519765 C =12402.833884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.183 3.817 3 H 0.054 0.946 4 N -0.749 5.749 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.095 4.095 14 C -0.128 4.128 15 C 0.108 3.892 16 N -0.581 5.581 17 C 0.566 3.434 18 O -0.536 6.536 19 C 0.089 3.911 20 C -0.099 4.099 21 C -0.069 4.069 22 C -0.072 4.072 23 Cl -0.046 7.046 24 C 0.109 3.891 25 N -0.431 5.431 26 C 0.073 3.927 27 C -0.129 4.129 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.360 0.640 32 H 0.258 0.742 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.175 0.825 41 H 0.066 0.934 42 H 0.142 0.858 43 H 0.076 0.924 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 -1.367 31.126 31.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.072 0.928 4 N -0.393 5.393 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.115 4.115 14 C -0.166 4.166 15 C -0.014 4.014 16 N -0.312 5.312 17 C 0.352 3.648 18 O -0.414 6.414 19 C -0.048 4.048 20 C -0.119 4.119 21 C -0.096 4.096 22 C -0.102 4.102 23 Cl -0.018 7.018 24 C -0.051 4.051 25 N -0.143 5.143 26 C -0.049 4.049 27 C -0.168 4.168 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.194 0.806 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.192 0.808 41 H 0.084 0.916 42 H 0.158 0.842 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.326 -1.421 30.303 30.644 hybrid contribution -0.166 -1.426 0.525 1.528 sum -4.492 -2.846 30.828 31.284 Atomic orbital electron populations 1.22500 0.99163 1.00838 1.00203 1.20169 0.91869 0.95423 0.85120 0.92778 1.42857 1.79721 1.09566 1.07117 1.19083 1.36699 0.95587 0.85517 0.89280 1.24666 1.01676 0.97409 0.95580 1.69700 1.53067 1.35521 1.00099 0.86586 0.78145 0.87015 0.76998 1.21143 1.21800 1.20332 1.21465 1.00447 0.94468 0.95073 1.21981 1.01596 0.96270 0.96792 1.21792 1.00017 0.96031 0.83552 1.47991 1.54784 1.11849 1.16581 1.17778 0.78725 0.85617 0.82641 1.90793 1.50480 1.18270 1.81826 1.21428 0.95584 0.92042 0.95767 1.22149 0.96823 1.01173 0.91792 1.21613 0.97646 0.92409 0.97894 1.22366 1.01277 0.95424 0.91096 1.98413 1.96279 1.73009 1.34049 1.23070 0.94756 1.00017 0.87236 1.67883 1.21029 1.05850 1.19489 1.23016 1.01049 0.79167 1.01649 1.22047 1.01305 0.99498 0.93929 0.94143 0.92679 0.93482 0.80640 0.93144 0.90976 0.91045 0.90497 0.91168 0.89127 0.82334 0.82847 0.80808 0.91579 0.84231 0.90580 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.79 37.16 0.33 -2.58 16 2 C 0.18 3.40 2.72 -67.93 -0.18 3.22 16 3 H 0.05 1.05 8.08 -51.92 -0.42 0.63 16 4 N -0.75 -17.36 4.85 -53.42 -0.26 -17.62 16 5 C -0.24 -6.69 10.41 -15.06 -0.16 -6.84 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 7 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -29.48 13.97 55.49 0.78 -28.70 16 9 Si 0.88 22.18 27.73 -169.99 -4.71 17.47 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 13 C -0.10 -1.41 2.14 -90.57 -0.19 -1.61 16 14 C -0.13 -1.88 4.81 -26.61 -0.13 -2.01 16 15 C 0.11 1.42 6.44 -3.71 -0.02 1.40 16 16 N -0.58 -7.27 2.97 -173.78 -0.52 -7.78 16 17 C 0.57 7.31 7.65 -12.21 -0.09 7.21 16 18 O -0.54 -8.24 15.79 5.34 0.08 -8.16 16 19 C 0.09 0.90 6.58 -83.01 -0.55 0.36 16 20 C -0.10 -0.78 9.63 -39.06 -0.38 -1.16 16 21 C -0.07 -0.41 9.97 -39.28 -0.39 -0.80 16 22 C -0.07 -0.45 6.35 -39.21 -0.25 -0.70 16 23 Cl -0.05 -0.26 28.99 -51.86 -1.50 -1.76 16 24 C 0.11 0.72 10.98 -17.52 -0.19 0.53 16 25 N -0.43 -3.83 6.13 -9.77 -0.06 -3.89 16 26 C 0.07 0.80 5.88 -3.71 -0.02 0.78 16 27 C -0.13 -1.55 4.97 -26.61 -0.13 -1.68 16 28 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.81 6.46 -51.93 -0.34 0.48 16 31 H 0.36 8.20 3.90 -40.82 -0.16 8.04 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.08 6.51 -51.93 -0.34 0.74 16 35 H 0.08 1.24 6.46 -51.93 -0.34 0.90 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 38 H 0.16 1.17 7.67 -52.49 -0.40 0.76 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.14 1.40 4.03 -84.06 -0.34 1.06 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -32.89 360.26 -9.14 -42.03 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.92 Total: 6.91 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.46 Total: -3.92 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.06 Total: -57.99 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.50 Total: -1.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.89 -9.14 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.094 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds