Wall clock time and date at job start Tue Mar 31 2020 20:51:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09009 * 109.47204 * 2 1
4 4 N 1.46497 * 109.47362 * 239.99391 * 2 1 3
5 5 C 1.36933 * 119.99896 * 84.72971 * 4 2 1
6 6 H 1.07996 * 120.00208 * 0.27009 * 5 4 2
7 7 C 1.38814 * 120.00012 * 180.27557 * 5 4 2
8 8 N 1.31621 * 120.00130 * 179.97438 * 7 5 4
9 9 Si 1.86798 * 119.99823 * 359.97438 * 7 5 4
10 10 H 1.48502 * 109.47418 * 90.00344 * 9 7 5
11 11 H 1.48504 * 109.47165 * 209.99891 * 9 7 5
12 12 H 1.48497 * 109.47213 * 330.00207 * 9 7 5
13 13 C 1.53008 * 109.47073 * 119.99219 * 2 1 3
14 14 C 1.53039 * 109.45762 * 60.06969 * 13 2 1
15 15 C 1.53189 * 109.31178 * 178.61446 * 14 13 2
16 16 N 1.46932 * 108.77500 * 54.63625 * 15 14 13
17 17 C 1.34772 * 120.62912 * 126.37001 * 16 15 14
18 18 O 1.21525 * 120.00293 * 352.35440 * 17 16 15
19 19 C 1.48116 * 119.99779 * 172.35643 * 17 16 15
20 20 C 1.39351 * 119.70646 * 170.56934 * 19 17 16
21 21 C 1.38522 * 119.07577 * 179.97438 * 20 19 17
22 22 C 1.38770 * 118.47562 * 0.02562 * 21 20 19
23 23 Cl 1.73604 * 120.33176 * 179.97438 * 22 21 20
24 24 C 1.38711 * 119.32626 * 359.97438 * 22 21 20
25 25 N 1.31486 * 120.88347 * 359.72129 * 24 22 21
26 26 C 1.46922 * 118.73890 * 306.38972 * 16 15 14
27 27 C 1.53043 * 109.45945 * 300.00439 * 13 2 1
28 28 H 1.08997 * 109.46963 * 300.00862 * 1 2 3
29 29 H 1.09004 * 109.46821 * 60.00500 * 1 2 3
30 30 H 1.08997 * 109.46910 * 180.02562 * 1 2 3
31 31 H 0.96995 * 119.99650 * 264.99764 * 4 2 1
32 32 H 0.97000 * 119.99846 * 179.97438 * 8 7 5
33 33 H 1.09001 * 109.45915 * 180.02562 * 13 2 1
34 34 H 1.09001 * 109.49733 * 298.56827 * 14 13 2
35 35 H 1.08998 * 109.49857 * 58.66094 * 14 13 2
36 36 H 1.08994 * 109.58880 * 294.84858 * 15 14 13
37 37 H 1.09002 * 109.70148 * 174.49288 * 15 14 13
38 38 H 1.08002 * 120.45929 * 0.02562 * 20 19 17
39 39 H 1.08001 * 120.75853 * 180.02562 * 21 20 19
40 40 H 1.08003 * 119.55773 * 180.02562 * 24 22 21
41 41 H 1.08997 * 109.59003 * 293.82620 * 26 16 15
42 42 H 1.09003 * 109.70709 * 173.46363 * 26 16 15
43 43 H 1.09002 * 109.49261 * 301.33535 * 27 13 2
44 44 H 1.08993 * 109.49589 * 61.39810 * 27 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0184 -0.6907 -1.1961
5 6 2.1439 -0.0091 -2.3770
6 1 1.8871 1.0388 -2.4257
7 6 2.6013 -0.6649 -3.5117
8 7 2.7215 -0.0099 -4.6470
9 14 3.0461 -2.4772 -3.4275
10 1 1.8475 -3.2963 -3.7401
11 1 4.1168 -2.7705 -4.4138
12 1 3.5276 -2.8057 -2.0617
13 6 2.0400 -0.7211 1.2494
14 6 1.5312 -2.1644 1.2484
15 6 2.0720 -2.8931 2.4826
16 7 1.7085 -2.1260 3.6818
17 6 1.0550 -2.7158 4.7024
18 8 0.6384 -3.8510 4.5820
19 6 0.8447 -1.9803 5.9707
20 6 0.0041 -2.5126 6.9464
21 6 -0.1828 -1.8140 8.1279
22 6 0.4777 -0.6049 8.2932
23 17 0.2776 0.3108 9.7545
24 6 1.2995 -0.1355 7.2791
25 7 1.4631 -0.8229 6.1703
26 6 2.0705 -0.7035 3.7471
27 6 1.5296 0.0006 2.4987
28 1 -0.3633 0.5140 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0276 0.0005
31 1 2.2491 -1.6318 -1.1523
32 1 3.0414 -0.4681 -5.4398
33 1 3.1300 -0.7206 1.2495
34 1 0.4414 -2.1660 1.2734
35 1 1.8755 -2.6710 0.3468
36 1 3.1569 -2.9719 2.4142
37 1 1.6361 -3.8905 2.5408
38 1 -0.4939 -3.4571 6.7840
39 1 -0.8279 -2.2016 8.9025
40 1 1.8158 0.8049 7.4041
41 1 3.1553 -0.6037 3.7817
42 1 1.6334 -0.2535 4.6386
43 1 1.8731 1.0351 2.4869
44 1 0.4400 -0.0208 2.5116
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001567633131.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:51:06
Heat of formation + Delta-G solvation = 5.051791 kcal
Electronic energy + Delta-G solvation = -26867.305613 eV
Core-core repulsion = 23038.635532 eV
Total energy + Delta-G solvation = -3828.670080 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 337.130 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.09387 -40.59068 -39.29188 -37.72682 -37.03427 -34.77404 -33.83089 -32.86607
-32.53969 -31.65644 -30.21026 -27.08077 -25.85376 -25.12160 -24.90320 -23.96647
-22.80076 -21.39575 -20.17603 -19.63190 -18.53997 -18.28188 -17.55499 -16.94396
-16.65457 -16.60883 -16.22045 -15.95935 -15.52694 -15.25120 -15.15509 -14.98668
-14.74331 -14.44483 -14.23215 -14.21082 -14.00696 -13.56255 -13.21048 -13.08914
-13.01761 -12.89530 -12.80243 -12.67621 -12.31622 -12.15510 -11.85441 -11.79819
-11.66271 -11.48521 -11.45066 -11.13969 -11.04120 -10.92960 -10.18046 -10.05771
-9.66455 -9.27712 -8.00621 -5.32252 -0.68971 -0.02326 0.86966 1.36387
1.39528 1.46590 1.49800 1.84485 2.48864 2.55966 2.90178 3.30951
3.46483 3.58420 3.60981 3.72875 3.81727 3.87512 3.87898 4.03588
4.23342 4.34937 4.41946 4.54826 4.60714 4.64553 4.66819 4.71813
4.78762 4.82738 4.90467 5.02798 5.03525 5.07377 5.09794 5.20032
5.27294 5.40369 5.41818 5.68226 5.68633 5.80808 6.24379 6.25470
6.44857 6.95891 7.11079 7.89116 8.07352 9.21275
Molecular weight = 337.13amu
Principal moments of inertia in cm(-1)
A = 0.025497 B = 0.002386 C = 0.002257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1097.916462 B =11730.519765 C =12402.833884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.176 3.824
3 H 0.044 0.956
4 N -0.751 5.751
5 C -0.222 4.222
6 H 0.056 0.944
7 C -0.068 4.068
8 N -0.986 5.986
9 Si 0.949 3.051
10 H -0.282 1.282
11 H -0.297 1.297
12 H -0.250 1.250
13 C -0.085 4.085
14 C -0.123 4.123
15 C 0.112 3.888
16 N -0.584 5.584
17 C 0.562 3.438
18 O -0.570 6.570
19 C 0.067 3.933
20 C -0.100 4.100
21 C -0.060 4.060
22 C -0.068 4.068
23 Cl -0.036 7.036
24 C 0.110 3.890
25 N -0.442 5.442
26 C 0.078 3.922
27 C -0.122 4.122
28 H 0.072 0.928
29 H 0.026 0.974
30 H 0.047 0.953
31 H 0.364 0.636
32 H 0.256 0.744
33 H 0.069 0.931
34 H 0.066 0.934
35 H 0.062 0.938
36 H 0.079 0.921
37 H 0.083 0.917
38 H 0.160 0.840
39 H 0.180 0.820
40 H 0.200 0.800
41 H 0.072 0.928
42 H 0.156 0.844
43 H 0.090 0.910
44 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.799 -1.656 34.719 35.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.069 3.931
3 H 0.062 0.938
4 N -0.396 5.396
5 C -0.353 4.353
6 H 0.074 0.926
7 C -0.259 4.259
8 N -0.637 5.637
9 Si 0.777 3.223
10 H -0.208 1.208
11 H -0.224 1.224
12 H -0.174 1.174
13 C -0.104 4.104
14 C -0.161 4.161
15 C -0.010 4.010
16 N -0.314 5.314
17 C 0.350 3.650
18 O -0.450 6.450
19 C -0.069 4.069
20 C -0.121 4.121
21 C -0.086 4.086
22 C -0.097 4.097
23 Cl -0.007 7.007
24 C -0.050 4.050
25 N -0.154 5.154
26 C -0.044 4.044
27 C -0.161 4.161
28 H 0.091 0.909
29 H 0.046 0.954
30 H 0.066 0.934
31 H 0.198 0.802
32 H 0.065 0.935
33 H 0.087 0.913
34 H 0.084 0.916
35 H 0.080 0.920
36 H 0.097 0.903
37 H 0.101 0.899
38 H 0.177 0.823
39 H 0.198 0.802
40 H 0.216 0.784
41 H 0.091 0.909
42 H 0.172 0.828
43 H 0.109 0.891
44 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -4.469 -1.698 33.964 34.299
hybrid contribution -0.186 -1.188 -0.442 1.281
sum -4.654 -2.886 33.522 33.967
Atomic orbital electron populations
1.22365 0.97979 1.00964 1.00427 1.20419 0.92586 0.95056 0.85073
0.93763 1.42896 1.79886 1.09765 1.07024 1.19046 1.34566 0.94420
0.87258 0.92574 1.25463 1.02830 1.02326 0.95253 1.69881 1.55254
1.37608 1.00985 0.85495 0.77629 0.81079 0.78133 1.20849 1.22383
1.17406 1.21342 1.00189 0.94499 0.94404 1.21897 1.01218 0.96074
0.96953 1.21662 1.00381 0.95601 0.83345 1.48077 1.54708 1.12386
1.16269 1.18212 0.77883 0.85413 0.83479 1.90763 1.51856 1.19771
1.82624 1.21098 0.97579 0.93054 0.95176 1.22206 0.96450 1.01372
0.92036 1.21875 0.97277 0.91925 0.97565 1.22454 1.00617 0.95390
0.91259 1.98427 1.96157 1.72722 1.33353 1.23459 0.94568 1.00403
0.86562 1.67679 1.21263 1.05675 1.20750 1.23129 1.01523 0.78187
1.01524 1.22012 1.01196 1.00064 0.92780 0.90913 0.95426 0.93385
0.80181 0.93529 0.91254 0.91565 0.91983 0.90265 0.89902 0.82267
0.80233 0.78367 0.90920 0.82764 0.89117 0.91512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.36 8.79 71.98 0.63 -4.73 16
2 C 0.18 6.42 2.72 45.00 0.12 6.54 16
3 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16
4 N -0.75 -34.67 4.85 -322.92 -1.57 -36.23 16
5 C -0.22 -12.66 10.41 84.03 0.87 -11.79 16
6 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16
7 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16
8 N -0.99 -64.02 13.97 21.65 0.30 -63.72 16
9 Si 0.95 46.14 27.73 68.60 1.90 48.05 16
10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16
11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16
12 H -0.25 -10.85 6.52 99.48 0.65 -10.21 16
13 C -0.09 -2.39 2.14 -10.76 -0.02 -2.42 16
14 C -0.12 -3.46 4.81 30.67 0.15 -3.31 16
15 C 0.11 2.83 6.44 86.36 0.56 3.39 16
16 N -0.58 -13.74 2.97 -822.01 -2.44 -16.19 16
17 C 0.56 13.97 7.65 86.87 0.66 14.63 16
18 O -0.57 -17.41 15.79 -3.79 -0.06 -17.47 16
19 C 0.07 1.25 6.58 41.90 0.28 1.52 16
20 C -0.10 -1.40 9.63 22.61 0.22 -1.19 16
21 C -0.06 -0.54 9.97 22.47 0.22 -0.32 16
22 C -0.07 -0.63 6.35 22.51 0.14 -0.49 16
23 Cl -0.04 -0.29 28.99 -2.72 -0.08 -0.36 16
24 C 0.11 1.12 10.98 84.86 0.93 2.05 16
25 N -0.44 -6.76 6.13 -184.82 -1.13 -7.89 16
26 C 0.08 1.51 5.88 86.36 0.51 2.02 16
27 C -0.12 -2.64 4.97 30.67 0.15 -2.48 16
28 H 0.07 1.99 6.46 -2.39 -0.02 1.97 16
29 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16
30 H 0.05 1.61 6.46 -2.39 -0.02 1.60 16
31 H 0.36 16.19 3.90 -92.71 -0.36 15.83 16
32 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16
33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
34 H 0.07 1.92 6.51 -2.39 -0.02 1.91 16
35 H 0.06 1.92 6.46 -2.39 -0.02 1.91 16
36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
37 H 0.08 2.23 7.00 -2.39 -0.02 2.22 16
38 H 0.16 2.16 7.67 -2.91 -0.02 2.14 16
39 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16
40 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16
41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
42 H 0.16 2.66 4.03 -65.84 -0.27 2.40 16
43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
44 H 0.07 1.47 6.51 -2.39 -0.02 1.46 16
Total: -1.00 -72.98 360.26 3.18 -69.80
By element:
Atomic # 1 Polarization: 23.79 SS G_CDS: 0.36 Total: 24.15 kcal
Atomic # 6 Polarization: -6.03 SS G_CDS: 5.89 Total: -0.14 kcal
Atomic # 7 Polarization: -119.18 SS G_CDS: -4.84 Total: -124.02 kcal
Atomic # 8 Polarization: -17.41 SS G_CDS: -0.06 Total: -17.47 kcal
Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.05 kcal
Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.36 kcal
Total: -72.98 3.18 -69.80 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567633131.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.848 kcal
(2) G-P(sol) polarization free energy of solvation -72.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.871 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.052 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds