Wall clock time and date at job start Tue Mar 31 2020 20:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.47204 * 2 1 4 4 N 1.46497 * 109.47362 * 239.99391 * 2 1 3 5 5 C 1.36933 * 119.99896 * 84.72971 * 4 2 1 6 6 H 1.07996 * 120.00208 * 0.27009 * 5 4 2 7 7 C 1.38814 * 120.00012 * 180.27557 * 5 4 2 8 8 N 1.31621 * 120.00130 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99823 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47418 * 90.00344 * 9 7 5 11 11 H 1.48504 * 109.47165 * 209.99891 * 9 7 5 12 12 H 1.48497 * 109.47213 * 330.00207 * 9 7 5 13 13 C 1.53008 * 109.47073 * 119.99219 * 2 1 3 14 14 C 1.53039 * 109.45762 * 60.06969 * 13 2 1 15 15 C 1.53189 * 109.31178 * 178.61446 * 14 13 2 16 16 N 1.46932 * 108.77500 * 54.63625 * 15 14 13 17 17 C 1.34772 * 120.62912 * 126.37001 * 16 15 14 18 18 O 1.21525 * 120.00293 * 352.35440 * 17 16 15 19 19 C 1.48116 * 119.99779 * 172.35643 * 17 16 15 20 20 C 1.39351 * 119.70646 * 170.56934 * 19 17 16 21 21 C 1.38522 * 119.07577 * 179.97438 * 20 19 17 22 22 C 1.38770 * 118.47562 * 0.02562 * 21 20 19 23 23 Cl 1.73604 * 120.33176 * 179.97438 * 22 21 20 24 24 C 1.38711 * 119.32626 * 359.97438 * 22 21 20 25 25 N 1.31486 * 120.88347 * 359.72129 * 24 22 21 26 26 C 1.46922 * 118.73890 * 306.38972 * 16 15 14 27 27 C 1.53043 * 109.45945 * 300.00439 * 13 2 1 28 28 H 1.08997 * 109.46963 * 300.00862 * 1 2 3 29 29 H 1.09004 * 109.46821 * 60.00500 * 1 2 3 30 30 H 1.08997 * 109.46910 * 180.02562 * 1 2 3 31 31 H 0.96995 * 119.99650 * 264.99764 * 4 2 1 32 32 H 0.97000 * 119.99846 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.45915 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.49733 * 298.56827 * 14 13 2 35 35 H 1.08998 * 109.49857 * 58.66094 * 14 13 2 36 36 H 1.08994 * 109.58880 * 294.84858 * 15 14 13 37 37 H 1.09002 * 109.70148 * 174.49288 * 15 14 13 38 38 H 1.08002 * 120.45929 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.75853 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.55773 * 180.02562 * 24 22 21 41 41 H 1.08997 * 109.59003 * 293.82620 * 26 16 15 42 42 H 1.09003 * 109.70709 * 173.46363 * 26 16 15 43 43 H 1.09002 * 109.49261 * 301.33535 * 27 13 2 44 44 H 1.08993 * 109.49589 * 61.39810 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1439 -0.0091 -2.3770 6 1 1.8871 1.0388 -2.4257 7 6 2.6013 -0.6649 -3.5117 8 7 2.7215 -0.0099 -4.6470 9 14 3.0461 -2.4772 -3.4275 10 1 1.8475 -3.2963 -3.7401 11 1 4.1168 -2.7705 -4.4138 12 1 3.5276 -2.8057 -2.0617 13 6 2.0400 -0.7211 1.2494 14 6 1.5312 -2.1644 1.2484 15 6 2.0720 -2.8931 2.4826 16 7 1.7085 -2.1260 3.6818 17 6 1.0550 -2.7158 4.7024 18 8 0.6384 -3.8510 4.5820 19 6 0.8447 -1.9803 5.9707 20 6 0.0041 -2.5126 6.9464 21 6 -0.1828 -1.8140 8.1279 22 6 0.4777 -0.6049 8.2932 23 17 0.2776 0.3108 9.7545 24 6 1.2995 -0.1355 7.2791 25 7 1.4631 -0.8229 6.1703 26 6 2.0705 -0.7035 3.7471 27 6 1.5296 0.0006 2.4987 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 2.2491 -1.6318 -1.1523 32 1 3.0414 -0.4681 -5.4398 33 1 3.1300 -0.7206 1.2495 34 1 0.4414 -2.1660 1.2734 35 1 1.8755 -2.6710 0.3468 36 1 3.1569 -2.9719 2.4142 37 1 1.6361 -3.8905 2.5408 38 1 -0.4939 -3.4571 6.7840 39 1 -0.8279 -2.2016 8.9025 40 1 1.8158 0.8049 7.4041 41 1 3.1553 -0.6037 3.7817 42 1 1.6334 -0.2535 4.6386 43 1 1.8731 1.0351 2.4869 44 1 0.4400 -0.0208 2.5116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567633131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:06 Heat of formation + Delta-G solvation = 5.051791 kcal Electronic energy + Delta-G solvation = -26867.305613 eV Core-core repulsion = 23038.635532 eV Total energy + Delta-G solvation = -3828.670080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09387 -40.59068 -39.29188 -37.72682 -37.03427 -34.77404 -33.83089 -32.86607 -32.53969 -31.65644 -30.21026 -27.08077 -25.85376 -25.12160 -24.90320 -23.96647 -22.80076 -21.39575 -20.17603 -19.63190 -18.53997 -18.28188 -17.55499 -16.94396 -16.65457 -16.60883 -16.22045 -15.95935 -15.52694 -15.25120 -15.15509 -14.98668 -14.74331 -14.44483 -14.23215 -14.21082 -14.00696 -13.56255 -13.21048 -13.08914 -13.01761 -12.89530 -12.80243 -12.67621 -12.31622 -12.15510 -11.85441 -11.79819 -11.66271 -11.48521 -11.45066 -11.13969 -11.04120 -10.92960 -10.18046 -10.05771 -9.66455 -9.27712 -8.00621 -5.32252 -0.68971 -0.02326 0.86966 1.36387 1.39528 1.46590 1.49800 1.84485 2.48864 2.55966 2.90178 3.30951 3.46483 3.58420 3.60981 3.72875 3.81727 3.87512 3.87898 4.03588 4.23342 4.34937 4.41946 4.54826 4.60714 4.64553 4.66819 4.71813 4.78762 4.82738 4.90467 5.02798 5.03525 5.07377 5.09794 5.20032 5.27294 5.40369 5.41818 5.68226 5.68633 5.80808 6.24379 6.25470 6.44857 6.95891 7.11079 7.89116 8.07352 9.21275 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.002386 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.916462 B =11730.519765 C =12402.833884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 H 0.044 0.956 4 N -0.751 5.751 5 C -0.222 4.222 6 H 0.056 0.944 7 C -0.068 4.068 8 N -0.986 5.986 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.250 1.250 13 C -0.085 4.085 14 C -0.123 4.123 15 C 0.112 3.888 16 N -0.584 5.584 17 C 0.562 3.438 18 O -0.570 6.570 19 C 0.067 3.933 20 C -0.100 4.100 21 C -0.060 4.060 22 C -0.068 4.068 23 Cl -0.036 7.036 24 C 0.110 3.890 25 N -0.442 5.442 26 C 0.078 3.922 27 C -0.122 4.122 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.047 0.953 31 H 0.364 0.636 32 H 0.256 0.744 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.160 0.840 39 H 0.180 0.820 40 H 0.200 0.800 41 H 0.072 0.928 42 H 0.156 0.844 43 H 0.090 0.910 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 -1.656 34.719 35.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 H 0.062 0.938 4 N -0.396 5.396 5 C -0.353 4.353 6 H 0.074 0.926 7 C -0.259 4.259 8 N -0.637 5.637 9 Si 0.777 3.223 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.174 1.174 13 C -0.104 4.104 14 C -0.161 4.161 15 C -0.010 4.010 16 N -0.314 5.314 17 C 0.350 3.650 18 O -0.450 6.450 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.086 4.086 22 C -0.097 4.097 23 Cl -0.007 7.007 24 C -0.050 4.050 25 N -0.154 5.154 26 C -0.044 4.044 27 C -0.161 4.161 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.198 0.802 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.177 0.823 39 H 0.198 0.802 40 H 0.216 0.784 41 H 0.091 0.909 42 H 0.172 0.828 43 H 0.109 0.891 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.469 -1.698 33.964 34.299 hybrid contribution -0.186 -1.188 -0.442 1.281 sum -4.654 -2.886 33.522 33.967 Atomic orbital electron populations 1.22365 0.97979 1.00964 1.00427 1.20419 0.92586 0.95056 0.85073 0.93763 1.42896 1.79886 1.09765 1.07024 1.19046 1.34566 0.94420 0.87258 0.92574 1.25463 1.02830 1.02326 0.95253 1.69881 1.55254 1.37608 1.00985 0.85495 0.77629 0.81079 0.78133 1.20849 1.22383 1.17406 1.21342 1.00189 0.94499 0.94404 1.21897 1.01218 0.96074 0.96953 1.21662 1.00381 0.95601 0.83345 1.48077 1.54708 1.12386 1.16269 1.18212 0.77883 0.85413 0.83479 1.90763 1.51856 1.19771 1.82624 1.21098 0.97579 0.93054 0.95176 1.22206 0.96450 1.01372 0.92036 1.21875 0.97277 0.91925 0.97565 1.22454 1.00617 0.95390 0.91259 1.98427 1.96157 1.72722 1.33353 1.23459 0.94568 1.00403 0.86562 1.67679 1.21263 1.05675 1.20750 1.23129 1.01523 0.78187 1.01524 1.22012 1.01196 1.00064 0.92780 0.90913 0.95426 0.93385 0.80181 0.93529 0.91254 0.91565 0.91983 0.90265 0.89902 0.82267 0.80233 0.78367 0.90920 0.82764 0.89117 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 8.79 71.98 0.63 -4.73 16 2 C 0.18 6.42 2.72 45.00 0.12 6.54 16 3 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 4 N -0.75 -34.67 4.85 -322.92 -1.57 -36.23 16 5 C -0.22 -12.66 10.41 84.03 0.87 -11.79 16 6 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 7 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 8 N -0.99 -64.02 13.97 21.65 0.30 -63.72 16 9 Si 0.95 46.14 27.73 68.60 1.90 48.05 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.25 -10.85 6.52 99.48 0.65 -10.21 16 13 C -0.09 -2.39 2.14 -10.76 -0.02 -2.42 16 14 C -0.12 -3.46 4.81 30.67 0.15 -3.31 16 15 C 0.11 2.83 6.44 86.36 0.56 3.39 16 16 N -0.58 -13.74 2.97 -822.01 -2.44 -16.19 16 17 C 0.56 13.97 7.65 86.87 0.66 14.63 16 18 O -0.57 -17.41 15.79 -3.79 -0.06 -17.47 16 19 C 0.07 1.25 6.58 41.90 0.28 1.52 16 20 C -0.10 -1.40 9.63 22.61 0.22 -1.19 16 21 C -0.06 -0.54 9.97 22.47 0.22 -0.32 16 22 C -0.07 -0.63 6.35 22.51 0.14 -0.49 16 23 Cl -0.04 -0.29 28.99 -2.72 -0.08 -0.36 16 24 C 0.11 1.12 10.98 84.86 0.93 2.05 16 25 N -0.44 -6.76 6.13 -184.82 -1.13 -7.89 16 26 C 0.08 1.51 5.88 86.36 0.51 2.02 16 27 C -0.12 -2.64 4.97 30.67 0.15 -2.48 16 28 H 0.07 1.99 6.46 -2.39 -0.02 1.97 16 29 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.05 1.61 6.46 -2.39 -0.02 1.60 16 31 H 0.36 16.19 3.90 -92.71 -0.36 15.83 16 32 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 1.92 6.51 -2.39 -0.02 1.91 16 35 H 0.06 1.92 6.46 -2.39 -0.02 1.91 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.23 7.00 -2.39 -0.02 2.22 16 38 H 0.16 2.16 7.67 -2.91 -0.02 2.14 16 39 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.16 2.66 4.03 -65.84 -0.27 2.40 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.47 6.51 -2.39 -0.02 1.46 16 Total: -1.00 -72.98 360.26 3.18 -69.80 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.36 Total: 24.15 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.89 Total: -0.14 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -4.84 Total: -124.02 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.06 Total: -17.47 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.05 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.36 kcal Total: -72.98 3.18 -69.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.848 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds