Wall clock time and date at job start Tue Mar 31 2020 21:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 O 1.21283 * 120.00262 * 120.00231 * 4 2 1 6 6 N 1.34777 * 119.99928 * 299.72137 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 C 1.53932 * 113.73694 * 271.73290 * 8 7 6 10 10 N 1.47963 * 86.18028 * 221.91729 * 9 8 7 11 11 C 1.46898 * 110.99625 * 137.58157 * 10 9 8 12 12 C 1.50698 * 109.47331 * 70.64037 * 11 10 9 13 13 O 1.21289 * 120.00105 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00027 * 179.97438 * 14 12 11 16 16 H 1.08002 * 119.99742 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99998 * 180.02562 * 15 14 12 18 18 N 1.31417 * 119.99797 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00152 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46959 * 90.00044 * 19 17 15 21 21 H 1.48499 * 109.47153 * 209.99737 * 19 17 15 22 22 H 1.48505 * 109.47130 * 329.99851 * 19 17 15 23 23 C 1.47960 * 90.76077 * 24.68746 * 10 9 8 24 24 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 25 25 F 1.39907 * 109.47109 * 299.99756 * 24 2 1 26 26 F 1.39894 * 109.47338 * 60.00216 * 24 2 1 27 27 F 1.39898 * 109.46956 * 180.02562 * 24 2 1 28 28 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 32 32 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 33 33 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 34 34 H 1.09003 * 112.93767 * 43.43664 * 8 7 6 35 35 H 1.09006 * 113.75836 * 336.23148 * 9 8 7 36 36 H 1.08995 * 113.76141 * 107.59935 * 9 8 7 37 37 H 1.09012 * 109.46696 * 190.64106 * 11 10 9 38 38 H 1.09003 * 109.47556 * 310.63395 * 11 10 9 39 39 H 0.97001 * 119.99801 * 0.02562 * 14 12 11 40 40 H 0.97001 * 119.99694 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.75980 * 220.98926 * 23 10 9 42 42 H 1.09001 * 113.75585 * 89.63106 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7112 -0.2466 2.4546 7 6 2.2044 -0.9336 3.6508 8 6 1.6985 -0.2094 4.9000 9 6 2.6228 0.9262 5.3749 10 7 2.3684 0.4270 6.7443 11 6 3.6052 0.4107 7.5369 12 6 4.0204 1.8253 7.8491 13 8 3.3516 2.7556 7.4510 14 7 5.1344 2.0567 8.5716 15 6 5.5124 3.3437 8.8552 16 1 4.9173 4.1720 8.5000 17 6 6.6612 3.5823 9.5996 18 7 7.0233 4.8159 9.8719 19 14 7.6908 2.1496 10.2134 20 1 8.7191 1.8083 9.1978 21 1 8.3576 2.5282 11.4851 22 1 6.8142 0.9735 10.4450 23 6 2.0588 -0.9203 6.2169 24 6 2.0399 -0.7213 -1.2492 25 9 1.5736 -2.0404 -1.2490 26 9 1.5737 -0.0619 -2.3915 27 9 3.4389 -0.7218 -1.2488 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.1535 0.5421 2.5436 32 1 1.8416 -1.9614 3.6551 33 1 3.2944 -0.9332 3.6465 34 1 0.6493 0.0774 4.8291 35 1 3.6579 0.8141 5.0519 36 1 2.2240 1.9235 5.1899 37 1 3.4335 -0.1313 8.4670 38 1 4.3941 -0.0827 6.9692 39 1 5.6690 1.3127 8.8903 40 1 7.8254 4.9824 10.3913 41 1 1.2093 -1.3983 6.7047 42 1 2.9289 -1.5724 6.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567837992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:19 Heat of formation + Delta-G solvation = -186.716319 kcal Electronic energy + Delta-G solvation = -28992.106821 eV Core-core repulsion = 24172.555146 eV Total energy + Delta-G solvation = -4819.551675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.40468 -47.92671 -47.80466 -40.61807 -39.85003 -37.96389 -35.22729 -34.54751 -33.97517 -31.75683 -30.98785 -27.71319 -26.93602 -26.12321 -25.06690 -23.76284 -22.41712 -21.00873 -19.83656 -19.42044 -19.01205 -18.77988 -18.38321 -18.00093 -17.05788 -16.39298 -16.30742 -15.92572 -15.35640 -15.20494 -15.00998 -14.78301 -14.65734 -14.47179 -14.25106 -14.21374 -14.00627 -13.95369 -13.67129 -13.54894 -13.36615 -13.11080 -12.89620 -12.65474 -12.53567 -12.42582 -12.17218 -11.94195 -11.77810 -11.49640 -11.22333 -10.81101 -10.76844 -10.62475 -10.33860 -10.00839 -9.60323 -9.51487 -8.82148 -8.40934 -8.21398 -6.34489 -3.86081 2.04771 2.13019 2.62282 3.00058 3.04129 3.12770 3.29247 3.60483 3.67716 3.69414 3.84145 4.07206 4.16070 4.27819 4.31993 4.45454 4.48397 4.60719 4.85931 4.94289 5.00050 5.14262 5.20301 5.24123 5.37133 5.39734 5.44487 5.51544 5.60895 5.64203 5.83436 5.90226 5.96625 6.15749 6.45006 6.92355 7.02909 7.54194 7.64168 8.10043 8.55974 8.91232 9.38587 9.78569 10.78556 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.002010 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.796933 B =13928.043266 C =14384.806006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.165 4.165 3 H 0.142 0.858 4 C 0.521 3.479 5 O -0.520 6.520 6 N -0.716 5.716 7 C 0.128 3.872 8 C -0.134 4.134 9 C 0.024 3.976 10 N -0.453 5.453 11 C 0.007 3.993 12 C 0.452 3.548 13 O -0.562 6.562 14 N -0.591 5.591 15 C -0.305 4.305 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.881 5.881 19 Si 0.879 3.121 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.269 1.269 23 C 0.009 3.991 24 C 0.473 3.527 25 F -0.172 7.172 26 F -0.181 7.181 27 F -0.172 7.172 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.405 0.595 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.092 0.908 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 -13.952 -18.931 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 H 0.160 0.840 4 C 0.305 3.695 5 O -0.396 6.396 6 N -0.368 5.368 7 C 0.005 3.995 8 C -0.153 4.153 9 C -0.105 4.105 10 N -0.175 5.175 11 C -0.125 4.125 12 C 0.238 3.762 13 O -0.444 6.444 14 N -0.230 5.230 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.521 5.521 19 Si 0.706 3.294 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.195 1.195 23 C -0.121 4.121 24 C 0.418 3.582 25 F -0.154 7.154 26 F -0.163 7.163 27 F -0.154 7.154 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.241 0.759 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.259 -13.558 -18.730 26.654 hybrid contribution 1.584 -1.052 0.143 1.907 sum -11.675 -14.610 -18.587 26.367 Atomic orbital electron populations 1.21859 0.89093 1.04804 1.05091 1.22656 1.01491 1.03262 0.91325 0.84021 1.19734 0.80764 0.84737 0.84311 1.90834 1.36802 1.25519 1.86422 1.45829 1.53619 1.32252 1.05123 1.21524 0.99584 0.96260 0.82178 1.23352 1.01563 0.97551 0.92883 1.23915 0.98199 0.99488 0.88865 1.68416 1.28474 1.09962 1.10661 1.22510 0.92463 0.97475 1.00093 1.19572 0.83025 0.89721 0.83921 1.90554 1.53875 1.44646 1.55289 1.42225 1.23486 1.08259 1.49057 1.19417 1.08843 0.83309 1.31818 0.86298 1.25044 0.97159 0.96637 0.97324 1.69622 1.25161 1.18521 1.38749 0.86673 0.81020 0.82093 0.79621 1.19631 1.20111 1.19482 1.23972 1.01589 0.93063 0.93441 1.19742 0.76047 0.77854 0.84527 1.93209 1.88292 1.37195 1.96664 1.93189 1.88560 1.80831 1.53680 1.93233 1.29157 1.96333 1.96646 0.90486 0.89551 0.89756 0.75950 0.90759 0.90867 0.87501 0.91329 0.88572 0.88960 0.92648 0.79711 0.91580 0.88936 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 8.85 37.16 0.33 -0.26 16 2 C -0.16 -1.05 2.71 -91.77 -0.25 -1.30 16 3 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.52 4.79 6.92 -10.98 -0.08 4.71 16 5 O -0.52 -7.04 14.83 5.55 0.08 -6.95 16 6 N -0.72 -5.16 5.45 -60.29 -0.33 -5.49 16 7 C 0.13 1.07 5.53 -4.04 -0.02 1.05 16 8 C -0.13 -1.19 3.94 -89.69 -0.35 -1.54 16 9 C 0.02 0.31 6.31 -2.77 -0.02 0.30 16 10 N -0.45 -6.62 5.95 -239.74 -1.43 -8.05 16 11 C 0.01 0.11 5.31 -4.98 -0.03 0.08 16 12 C 0.45 10.07 7.59 -10.99 -0.08 9.98 16 13 O -0.56 -14.70 15.13 5.55 0.08 -14.62 16 14 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 15 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 16 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 17 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 18 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 19 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 23 C 0.01 0.09 7.54 -2.77 -0.02 0.07 16 24 C 0.47 4.33 2.42 37.16 0.09 4.42 16 25 F -0.17 -1.85 15.88 2.25 0.04 -1.82 16 26 F -0.18 -1.51 16.80 2.25 0.04 -1.47 16 27 F -0.17 -1.98 16.40 2.25 0.04 -1.94 16 28 H 0.08 0.36 7.80 -51.93 -0.41 -0.04 16 29 H 0.09 0.17 7.57 -51.93 -0.39 -0.22 16 30 H 0.08 0.25 7.80 -51.93 -0.41 -0.15 16 31 H 0.41 1.87 7.90 -40.82 -0.32 1.54 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 36 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 37 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 38 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 39 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -35.75 362.87 -6.13 -41.88 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.45 Total: 7.40 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.68 Total: 9.84 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -1.04 Total: -52.30 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.17 Total: -21.57 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.11 Total: -5.23 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.75 -6.13 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567837992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.833 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds