Wall clock time and date at job start Tue Mar 31 2020 21:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 O 1.21283 * 120.00262 * 120.00231 * 4 2 1 6 6 N 1.34777 * 119.99928 * 299.72137 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 C 1.53932 * 113.73694 * 271.73290 * 8 7 6 10 10 N 1.47963 * 86.18028 * 221.91729 * 9 8 7 11 11 C 1.46898 * 110.99625 * 137.58157 * 10 9 8 12 12 C 1.50698 * 109.47331 * 70.64037 * 11 10 9 13 13 O 1.21289 * 120.00105 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00027 * 179.97438 * 14 12 11 16 16 H 1.08002 * 119.99742 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99998 * 180.02562 * 15 14 12 18 18 N 1.31417 * 119.99797 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00152 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46959 * 90.00044 * 19 17 15 21 21 H 1.48499 * 109.47153 * 209.99737 * 19 17 15 22 22 H 1.48505 * 109.47130 * 329.99851 * 19 17 15 23 23 C 1.47960 * 90.76077 * 24.68746 * 10 9 8 24 24 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 25 25 F 1.39907 * 109.47109 * 299.99756 * 24 2 1 26 26 F 1.39894 * 109.47338 * 60.00216 * 24 2 1 27 27 F 1.39898 * 109.46956 * 180.02562 * 24 2 1 28 28 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 32 32 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 33 33 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 34 34 H 1.09003 * 112.93767 * 43.43664 * 8 7 6 35 35 H 1.09006 * 113.75836 * 336.23148 * 9 8 7 36 36 H 1.08995 * 113.76141 * 107.59935 * 9 8 7 37 37 H 1.09012 * 109.46696 * 190.64106 * 11 10 9 38 38 H 1.09003 * 109.47556 * 310.63395 * 11 10 9 39 39 H 0.97001 * 119.99801 * 0.02562 * 14 12 11 40 40 H 0.97001 * 119.99694 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.75980 * 220.98926 * 23 10 9 42 42 H 1.09001 * 113.75585 * 89.63106 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7112 -0.2466 2.4546 7 6 2.2044 -0.9336 3.6508 8 6 1.6985 -0.2094 4.9000 9 6 2.6228 0.9262 5.3749 10 7 2.3684 0.4270 6.7443 11 6 3.6052 0.4107 7.5369 12 6 4.0204 1.8253 7.8491 13 8 3.3516 2.7556 7.4510 14 7 5.1344 2.0567 8.5716 15 6 5.5124 3.3437 8.8552 16 1 4.9173 4.1720 8.5000 17 6 6.6612 3.5823 9.5996 18 7 7.0233 4.8159 9.8719 19 14 7.6908 2.1496 10.2134 20 1 8.7191 1.8083 9.1978 21 1 8.3576 2.5282 11.4851 22 1 6.8142 0.9735 10.4450 23 6 2.0588 -0.9203 6.2169 24 6 2.0399 -0.7213 -1.2492 25 9 1.5736 -2.0404 -1.2490 26 9 1.5737 -0.0619 -2.3915 27 9 3.4389 -0.7218 -1.2488 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.1535 0.5421 2.5436 32 1 1.8416 -1.9614 3.6551 33 1 3.2944 -0.9332 3.6465 34 1 0.6493 0.0774 4.8291 35 1 3.6579 0.8141 5.0519 36 1 2.2240 1.9235 5.1899 37 1 3.4335 -0.1313 8.4670 38 1 4.3941 -0.0827 6.9692 39 1 5.6690 1.3127 8.8903 40 1 7.8254 4.9824 10.3913 41 1 1.2093 -1.3983 6.7047 42 1 2.9289 -1.5724 6.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567837992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:18 Heat of formation + Delta-G solvation = -216.821741 kcal Electronic energy + Delta-G solvation = -28993.412290 eV Core-core repulsion = 24172.555146 eV Total energy + Delta-G solvation = -4820.857144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.13561 -48.64130 -48.59089 -41.51962 -40.79240 -39.62750 -36.12671 -35.86964 -35.07087 -33.77838 -32.09249 -28.84085 -27.42517 -27.04724 -26.67486 -24.69109 -23.43738 -21.69732 -21.26810 -20.63898 -20.24374 -19.71562 -19.49737 -18.74283 -17.84887 -17.74252 -17.17952 -16.88139 -16.70372 -16.42751 -16.16779 -15.78398 -15.56366 -15.41208 -15.18625 -15.01222 -14.94732 -14.79165 -14.72785 -14.63143 -14.49854 -14.27420 -14.00630 -13.69117 -13.55008 -13.36085 -13.11996 -12.96488 -12.89178 -12.47808 -12.43098 -12.26964 -11.99756 -11.77738 -11.66181 -11.50764 -11.08656 -10.41999 -10.26188 -10.21261 -9.67567 -8.42816 -6.03580 1.28825 1.33810 1.37403 1.42930 1.49942 1.94005 1.99009 2.21378 2.64784 2.68004 2.99083 3.04925 3.13363 3.17258 3.43642 3.64047 3.70893 3.81490 3.99854 4.07512 4.20228 4.29944 4.37809 4.44723 4.52762 4.62012 4.65355 4.68224 4.72669 4.87439 4.91933 5.11842 5.19408 5.36665 5.43338 5.52477 5.90388 6.03459 6.33382 6.57883 6.86622 7.02115 7.38052 7.94700 8.74757 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.002010 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.796933 B =13928.043266 C =14384.806006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 H 0.170 0.830 4 C 0.518 3.482 5 O -0.569 6.569 6 N -0.704 5.704 7 C 0.133 3.867 8 C -0.104 4.104 9 C 0.014 3.986 10 N -0.485 5.485 11 C 0.018 3.982 12 C 0.450 3.550 13 O -0.608 6.608 14 N -0.593 5.593 15 C -0.327 4.327 16 H 0.056 0.944 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.258 1.258 21 H -0.275 1.275 22 H -0.231 1.231 23 C 0.016 3.984 24 C 0.464 3.536 25 F -0.185 7.185 26 F -0.177 7.177 27 F -0.190 7.190 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.420 0.580 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.111 0.889 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 -16.853 -18.744 28.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 H 0.187 0.813 4 C 0.303 3.697 5 O -0.448 6.448 6 N -0.356 5.356 7 C 0.009 3.991 8 C -0.123 4.123 9 C -0.115 4.115 10 N -0.208 5.208 11 C -0.113 4.113 12 C 0.238 3.762 13 O -0.492 6.492 14 N -0.235 5.235 15 C -0.456 4.456 16 H 0.074 0.926 17 C -0.214 4.214 18 N -0.575 5.575 19 Si 0.784 3.216 20 H -0.182 1.182 21 H -0.200 1.200 22 H -0.155 1.155 23 C -0.113 4.113 24 C 0.410 3.590 25 F -0.167 7.167 26 F -0.158 7.158 27 F -0.172 7.172 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.258 0.742 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.103 0.897 39 H 0.224 0.776 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.930 -16.459 -18.546 28.441 hybrid contribution 1.672 -0.038 0.006 1.672 sum -12.258 -16.497 -18.540 27.679 Atomic orbital electron populations 1.21944 0.86874 1.04824 1.06945 1.22725 1.03100 1.03574 0.88362 0.81311 1.20169 0.79973 0.84178 0.85349 1.90815 1.39076 1.27755 1.87137 1.45738 1.53103 1.32392 1.04400 1.21405 0.98810 0.96646 0.82200 1.23145 1.01353 0.95045 0.92782 1.23893 0.98740 0.99704 0.89128 1.68414 1.27748 1.13342 1.11279 1.22464 0.94159 0.92557 1.02156 1.20882 0.81518 0.92212 0.81563 1.90532 1.55063 1.47214 1.56417 1.42078 1.24512 1.06982 1.49974 1.18990 1.09278 0.84033 1.33338 0.92628 1.26109 0.98127 1.00458 0.96722 1.69804 1.26145 1.21768 1.39754 0.85381 0.79037 0.78423 0.78797 1.18241 1.19993 1.15468 1.24094 1.02868 0.91181 0.93111 1.20221 0.75291 0.77687 0.85824 1.93177 1.88320 1.38372 1.96790 1.93192 1.88362 1.80573 1.53701 1.93193 1.30807 1.96397 1.96798 0.91383 0.87112 0.88509 0.74234 0.89971 0.92274 0.85813 0.92103 0.91200 0.86418 0.89729 0.77571 0.91149 0.87054 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.85 71.98 0.64 -0.13 16 2 C -0.16 -1.70 2.71 -11.54 -0.03 -1.73 16 3 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 4 C 0.52 8.78 6.92 87.66 0.61 9.39 16 5 O -0.57 -15.13 14.83 -3.04 -0.05 -15.18 16 6 N -0.70 -8.57 5.45 -463.06 -2.52 -11.09 16 7 C 0.13 1.91 5.53 86.38 0.48 2.38 16 8 C -0.10 -1.55 3.94 -10.15 -0.04 -1.59 16 9 C 0.01 0.36 6.31 86.40 0.55 0.90 16 10 N -0.48 -13.11 5.95 -912.39 -5.43 -18.54 16 11 C 0.02 0.54 5.31 85.56 0.45 0.99 16 12 C 0.45 20.03 7.59 87.66 0.67 20.69 16 13 O -0.61 -33.03 15.13 -3.06 -0.05 -33.08 16 14 N -0.59 -27.82 5.09 -306.99 -1.56 -29.38 16 15 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 16 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 17 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 18 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 19 Si 0.96 38.65 27.74 68.60 1.90 40.55 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 23 C 0.02 0.26 7.54 86.40 0.65 0.91 16 24 C 0.46 8.19 2.42 71.98 0.17 8.36 16 25 F -0.19 -3.97 15.88 44.97 0.71 -3.25 16 26 F -0.18 -2.77 16.80 44.97 0.76 -2.01 16 27 F -0.19 -4.39 16.40 44.97 0.74 -3.66 16 28 H 0.07 0.51 7.80 -2.39 -0.02 0.49 16 29 H 0.11 0.04 7.57 -2.39 -0.02 0.02 16 30 H 0.10 0.31 7.80 -2.39 -0.02 0.29 16 31 H 0.42 2.67 7.90 -92.71 -0.73 1.93 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.06 7.84 -2.39 -0.02 1.04 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.60 7.53 -2.38 -0.02 1.58 16 36 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 37 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 38 H 0.08 2.03 7.69 -2.39 -0.02 2.01 16 39 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 40 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.18 7.75 -2.39 -0.02 1.16 16 Total: -1.00 -85.21 362.87 0.03 -85.18 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.24 Total: 24.79 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 5.46 Total: 21.56 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -9.21 Total: -114.91 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.09 Total: -48.26 kcal Atomic # 9 Polarization: -11.13 SS G_CDS: 2.21 Total: -8.92 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.55 kcal Total: -85.21 0.03 -85.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567837992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.642 kcal (2) G-P(sol) polarization free energy of solvation -85.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds