Wall clock time and date at job start Tue Mar 31 2020 21:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47024 * 2 1 4 4 N 1.46505 * 109.47031 * 120.00317 * 2 1 3 5 5 C 1.36935 * 119.99362 * 274.99491 * 4 2 1 6 6 H 1.07997 * 120.00329 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99714 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00307 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47488 * 89.99698 * 9 7 5 11 11 H 1.48495 * 109.47396 * 210.00301 * 9 7 5 12 12 H 1.48507 * 109.47182 * 329.99810 * 9 7 5 13 13 C 1.53001 * 109.46867 * 239.99671 * 2 1 3 14 14 H 1.08996 * 109.49945 * 299.93874 * 13 2 1 15 15 C 1.53048 * 109.49471 * 60.00417 * 13 2 1 16 16 C 1.53044 * 109.53620 * 181.31410 * 15 13 2 17 17 C 1.53191 * 109.31134 * 298.63140 * 16 15 13 18 18 N 1.46930 * 108.77465 * 54.63989 * 17 16 15 19 19 C 1.34769 * 120.63214 * 126.36871 * 18 17 16 20 20 O 1.21550 * 120.00312 * 185.06619 * 19 18 17 21 21 C 1.47845 * 120.00015 * 5.06405 * 19 18 17 22 22 C 1.39558 * 120.55453 * 40.04665 * 21 19 18 23 23 N 1.31663 * 120.59373 * 179.97438 * 22 21 19 24 24 C 1.31946 * 121.89632 * 0.02562 * 23 22 21 25 25 C 1.38424 * 121.06393 * 359.97438 * 24 23 22 26 26 Cl 1.73598 * 120.36267 * 180.02562 * 25 24 23 27 27 C 1.38521 * 119.27420 * 359.74658 * 25 24 23 28 28 C 1.46925 * 118.73453 * 306.63758 * 18 17 16 29 29 H 1.09002 * 109.47119 * 300.00038 * 1 2 3 30 30 H 1.08999 * 109.47139 * 59.99970 * 1 2 3 31 31 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 32 32 H 0.96991 * 120.00274 * 95.00141 * 4 2 1 33 33 H 0.97005 * 120.00118 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46286 * 61.28969 * 15 13 2 35 35 H 1.08997 * 109.44493 * 301.32741 * 15 13 2 36 36 H 1.09004 * 109.49563 * 178.68196 * 16 15 13 37 37 H 1.09000 * 109.49577 * 58.58417 * 16 15 13 38 38 H 1.08993 * 109.58952 * 294.84640 * 17 16 15 39 39 H 1.09004 * 109.58527 * 174.42218 * 17 16 15 40 40 H 1.07997 * 119.70096 * 0.02562 * 22 21 19 41 41 H 1.08002 * 119.46763 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.85905 * 180.27544 * 27 25 24 43 43 H 1.09004 * 109.58283 * 173.14753 * 28 18 17 44 44 H 1.09001 * 109.58917 * 293.56921 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6617 3.5090 8 7 2.9262 -1.9386 3.4496 9 14 2.7902 0.2699 5.1182 10 1 1.5226 0.1778 5.8863 11 1 3.8952 -0.3227 5.9138 12 1 3.0942 1.6954 4.8340 13 6 2.0400 -0.7213 -1.2492 14 1 1.6778 -1.7494 -1.2491 15 6 1.5301 -0.0003 -2.4992 16 6 2.0125 -0.7399 -3.7492 17 6 3.5441 -0.7369 -3.7802 18 7 4.0437 -1.2972 -2.5172 19 6 4.9179 -2.3229 -2.5191 20 8 5.2531 -2.8378 -1.4704 21 6 5.4693 -2.8218 -3.7970 22 6 5.8298 -1.9318 -4.8097 23 7 6.3214 -2.3753 -5.9478 24 6 6.4923 -3.6631 -6.1788 25 6 6.1595 -4.6100 -5.2255 26 17 6.3927 -6.2997 -5.5484 27 6 5.6439 -4.1943 -4.0089 28 6 3.5676 -0.7218 -1.2519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 3.2496 -2.3959 4.2417 34 1 1.9124 1.0204 -2.5110 35 1 0.4404 0.0202 -2.4872 36 1 1.6296 -0.2393 -4.6386 37 1 1.6511 -1.7680 -3.7258 38 1 3.9053 0.2850 -3.8950 39 1 3.8939 -1.3460 -4.6138 40 1 5.7052 -0.8698 -4.6582 41 1 6.8984 -3.9835 -7.1268 42 1 5.3798 -4.9109 -3.2453 43 1 3.9328 -1.3209 -0.4177 44 1 3.9307 0.3015 -1.1562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:23 Heat of formation + Delta-G solvation = 8.090913 kcal Electronic energy + Delta-G solvation = -27018.186809 eV Core-core repulsion = 23189.648514 eV Total energy + Delta-G solvation = -3828.538294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.18052 -39.64902 -37.81560 -37.06533 -35.55365 -33.22792 -32.86942 -31.82392 -31.71864 -29.78913 -28.23194 -26.02528 -24.80108 -24.08461 -23.56942 -22.92600 -21.28321 -19.75586 -19.46035 -17.86554 -17.53600 -17.08108 -16.96601 -16.04967 -15.38839 -15.17882 -14.88428 -14.69249 -14.34366 -14.09482 -13.73212 -13.67430 -13.64833 -13.13804 -12.97740 -12.91355 -12.77626 -12.47747 -12.31396 -12.02438 -11.65730 -11.35635 -11.14489 -11.03784 -10.86871 -10.72768 -10.68391 -10.48580 -10.30208 -10.24012 -10.15922 -9.85623 -9.68119 -9.55064 -9.33379 -8.89157 -8.57120 -6.92124 -5.71120 -3.00686 0.20917 0.57568 1.53562 2.57753 2.86458 3.26259 3.46055 3.50908 3.53199 3.85197 4.14993 4.21550 4.34698 4.58427 4.66707 4.69951 4.80508 4.85296 4.98066 5.18178 5.28632 5.35175 5.37894 5.49697 5.59960 5.64949 5.73248 5.77467 5.86676 5.89605 5.97829 6.07743 6.16999 6.19548 6.39874 6.44827 6.46301 6.65884 6.70418 6.90573 7.09268 7.25527 7.36359 7.73691 8.09084 8.46276 9.57517 10.14933 10.49231 11.50962 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002825 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.363115 B = 9908.131702 C =11048.065237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.095 3.905 18 N -0.601 5.601 19 C 0.557 3.443 20 O -0.513 6.513 21 C -0.159 4.159 22 C 0.132 3.868 23 N -0.470 5.470 24 C 0.128 3.872 25 C -0.095 4.095 26 Cl -0.046 7.046 27 C -0.016 4.016 28 C 0.122 3.878 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.156 0.844 43 H 0.109 0.891 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 -1.423 -24.160 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.124 4.124 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.028 4.028 18 N -0.334 5.334 19 C 0.342 3.658 20 O -0.388 6.388 21 C -0.165 4.165 22 C -0.026 4.026 23 N -0.178 5.178 24 C -0.029 4.029 25 C -0.124 4.124 26 Cl -0.018 7.018 27 C -0.042 4.042 28 C 0.001 3.999 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.189 0.811 41 H 0.187 0.813 42 H 0.174 0.826 43 H 0.128 0.872 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.668 -1.122 -24.100 24.403 hybrid contribution -0.146 -0.643 1.556 1.690 sum 3.521 -1.764 -22.543 22.885 Atomic orbital electron populations 1.22485 0.99293 1.00808 0.99900 1.20167 0.91855 0.95245 0.85720 0.93463 1.42457 1.78091 1.10764 1.05285 1.19181 1.36743 0.93787 0.87347 0.91294 1.24737 1.02162 0.95941 0.97979 1.69667 1.50575 1.08629 1.28784 0.86243 0.77229 0.78798 0.84212 1.21859 1.21839 1.20828 1.21693 0.94561 1.00633 0.95471 0.91150 1.21641 1.01216 0.99070 0.93401 1.21921 0.94507 1.01703 0.99025 1.22105 0.95394 0.99253 0.86040 1.48100 1.43435 1.33547 1.08326 1.17960 0.79789 0.80135 0.87891 1.90906 1.59204 1.56540 1.32179 1.21094 1.04170 0.94339 0.96892 1.23305 0.91317 1.00750 0.87231 1.67898 1.12957 1.15368 1.21546 1.22990 0.94145 0.87295 0.98488 1.21993 1.05729 0.87559 0.97087 1.98403 1.95460 1.12590 1.95316 1.21654 0.92014 0.95320 0.95258 1.21706 0.94141 0.99137 0.84875 0.92854 0.94284 0.93625 0.78178 0.93524 0.91716 0.91066 0.90779 0.91571 0.90737 0.89932 0.81069 0.81309 0.82634 0.87232 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.18 3.38 2.48 -67.93 -0.17 3.21 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.70 4.52 -53.42 -0.24 -17.94 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 9 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C -0.10 -1.59 1.96 -90.72 -0.18 -1.77 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.12 -1.31 4.85 -26.68 -0.13 -1.44 16 16 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 17 C 0.10 0.89 4.91 -3.71 -0.02 0.87 16 18 N -0.60 -8.04 2.98 -174.14 -0.52 -8.56 16 19 C 0.56 8.35 7.35 -12.33 -0.09 8.26 16 20 O -0.51 -10.19 16.35 5.32 0.09 -10.10 16 21 C -0.16 -1.85 5.16 -104.83 -0.54 -2.40 16 22 C 0.13 1.27 8.55 -17.13 -0.15 1.12 16 23 N -0.47 -4.49 10.34 -12.88 -0.13 -4.62 16 24 C 0.13 1.07 10.97 -17.43 -0.19 0.88 16 25 C -0.09 -0.87 6.34 -39.41 -0.25 -1.12 16 26 Cl -0.05 -0.39 28.98 -51.86 -1.50 -1.89 16 27 C -0.02 -0.17 9.60 -38.83 -0.37 -0.54 16 28 C 0.12 1.99 5.45 -3.93 -0.02 1.97 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.38 10.26 7.61 -40.82 -0.31 9.95 16 33 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.08 0.67 4.67 -51.93 -0.24 0.43 16 40 H 0.17 1.33 6.53 -52.49 -0.34 0.98 16 41 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.11 2.30 6.49 -51.93 -0.34 1.96 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -32.51 368.90 -9.31 -41.82 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.09 Total: 7.89 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.17 Total: -1.99 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.17 Total: -58.81 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.51 -9.31 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.911 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds