Wall clock time and date at job start Tue Mar 31 2020 21:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47024 * 2 1 4 4 N 1.46505 * 109.47031 * 120.00317 * 2 1 3 5 5 C 1.36935 * 119.99362 * 274.99491 * 4 2 1 6 6 H 1.07997 * 120.00329 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99714 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00307 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47488 * 89.99698 * 9 7 5 11 11 H 1.48495 * 109.47396 * 210.00301 * 9 7 5 12 12 H 1.48507 * 109.47182 * 329.99810 * 9 7 5 13 13 C 1.53001 * 109.46867 * 239.99671 * 2 1 3 14 14 H 1.08996 * 109.49945 * 299.93874 * 13 2 1 15 15 C 1.53048 * 109.49471 * 60.00417 * 13 2 1 16 16 C 1.53044 * 109.53620 * 181.31410 * 15 13 2 17 17 C 1.53191 * 109.31134 * 298.63140 * 16 15 13 18 18 N 1.46930 * 108.77465 * 54.63989 * 17 16 15 19 19 C 1.34769 * 120.63214 * 126.36871 * 18 17 16 20 20 O 1.21550 * 120.00312 * 185.06619 * 19 18 17 21 21 C 1.47845 * 120.00015 * 5.06405 * 19 18 17 22 22 C 1.39558 * 120.55453 * 40.04665 * 21 19 18 23 23 N 1.31663 * 120.59373 * 179.97438 * 22 21 19 24 24 C 1.31946 * 121.89632 * 0.02562 * 23 22 21 25 25 C 1.38424 * 121.06393 * 359.97438 * 24 23 22 26 26 Cl 1.73598 * 120.36267 * 180.02562 * 25 24 23 27 27 C 1.38521 * 119.27420 * 359.74658 * 25 24 23 28 28 C 1.46925 * 118.73453 * 306.63758 * 18 17 16 29 29 H 1.09002 * 109.47119 * 300.00038 * 1 2 3 30 30 H 1.08999 * 109.47139 * 59.99970 * 1 2 3 31 31 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 32 32 H 0.96991 * 120.00274 * 95.00141 * 4 2 1 33 33 H 0.97005 * 120.00118 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46286 * 61.28969 * 15 13 2 35 35 H 1.08997 * 109.44493 * 301.32741 * 15 13 2 36 36 H 1.09004 * 109.49563 * 178.68196 * 16 15 13 37 37 H 1.09000 * 109.49577 * 58.58417 * 16 15 13 38 38 H 1.08993 * 109.58952 * 294.84640 * 17 16 15 39 39 H 1.09004 * 109.58527 * 174.42218 * 17 16 15 40 40 H 1.07997 * 119.70096 * 0.02562 * 22 21 19 41 41 H 1.08002 * 119.46763 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.85905 * 180.27544 * 27 25 24 43 43 H 1.09004 * 109.58283 * 173.14753 * 28 18 17 44 44 H 1.09001 * 109.58917 * 293.56921 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6617 3.5090 8 7 2.9262 -1.9386 3.4496 9 14 2.7902 0.2699 5.1182 10 1 1.5226 0.1778 5.8863 11 1 3.8952 -0.3227 5.9138 12 1 3.0942 1.6954 4.8340 13 6 2.0400 -0.7213 -1.2492 14 1 1.6778 -1.7494 -1.2491 15 6 1.5301 -0.0003 -2.4992 16 6 2.0125 -0.7399 -3.7492 17 6 3.5441 -0.7369 -3.7802 18 7 4.0437 -1.2972 -2.5172 19 6 4.9179 -2.3229 -2.5191 20 8 5.2531 -2.8378 -1.4704 21 6 5.4693 -2.8218 -3.7970 22 6 5.8298 -1.9318 -4.8097 23 7 6.3214 -2.3753 -5.9478 24 6 6.4923 -3.6631 -6.1788 25 6 6.1595 -4.6100 -5.2255 26 17 6.3927 -6.2997 -5.5484 27 6 5.6439 -4.1943 -4.0089 28 6 3.5676 -0.7218 -1.2519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 3.2496 -2.3959 4.2417 34 1 1.9124 1.0204 -2.5110 35 1 0.4404 0.0202 -2.4872 36 1 1.6296 -0.2393 -4.6386 37 1 1.6511 -1.7680 -3.7258 38 1 3.9053 0.2850 -3.8950 39 1 3.8939 -1.3460 -4.6138 40 1 5.7052 -0.8698 -4.6582 41 1 6.8984 -3.9835 -7.1268 42 1 5.3798 -4.9109 -3.2453 43 1 3.9328 -1.3209 -0.4177 44 1 3.9307 0.3015 -1.1562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568412369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:20 Heat of formation + Delta-G solvation = -13.020434 kcal Electronic energy + Delta-G solvation = -27019.102265 eV Core-core repulsion = 23189.648514 eV Total energy + Delta-G solvation = -3829.453751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11110 -40.64699 -39.08841 -37.77942 -37.02713 -34.77687 -33.77558 -33.20670 -32.60720 -31.25429 -29.80216 -27.06713 -26.19070 -25.16580 -24.77316 -24.08461 -22.43038 -21.15773 -20.55045 -19.18224 -18.73194 -18.30276 -17.82771 -17.16120 -16.75366 -16.31326 -16.22671 -15.66761 -15.57869 -15.31758 -15.20486 -14.98389 -14.46718 -14.34638 -14.21715 -14.04844 -13.92982 -13.62642 -13.43136 -13.14441 -12.99345 -12.79763 -12.52593 -12.37312 -12.33692 -12.15091 -12.01474 -11.86493 -11.69761 -11.57295 -11.28590 -11.17341 -11.08327 -10.93497 -10.66830 -10.10942 -9.70940 -8.97831 -7.90800 -5.19159 -0.58343 -0.22626 0.80665 1.45474 1.47539 1.50875 1.55659 1.81173 2.42618 2.57147 3.08505 3.32327 3.42769 3.48190 3.53921 3.70877 3.83244 3.88667 3.94322 4.07324 4.09434 4.23951 4.30137 4.42527 4.58381 4.63047 4.63206 4.69185 4.76317 4.86667 4.91688 4.92928 5.03550 5.05871 5.14181 5.17950 5.29363 5.38137 5.45846 5.50836 5.57491 5.65026 6.26477 6.30275 6.50929 6.95557 7.35547 8.13944 8.35108 9.32719 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002825 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.363115 B = 9908.131702 C =11048.065237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.051 0.949 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.079 0.921 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.969 3.031 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.266 1.266 13 C -0.091 4.091 14 H 0.047 0.953 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.088 3.912 18 N -0.595 5.595 19 C 0.552 3.448 20 O -0.579 6.579 21 C -0.173 4.173 22 C 0.145 3.855 23 N -0.473 5.473 24 C 0.142 3.858 25 C -0.094 4.094 26 Cl -0.038 7.038 27 C -0.026 4.026 28 C 0.130 3.870 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.367 0.633 33 H 0.247 0.753 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.194 0.806 41 H 0.202 0.798 42 H 0.142 0.858 43 H 0.052 0.948 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 0.819 -27.876 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.069 0.931 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.097 0.903 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.191 1.191 13 C -0.111 4.111 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.033 4.033 18 N -0.326 5.326 19 C 0.340 3.660 20 O -0.459 6.459 21 C -0.179 4.179 22 C -0.012 4.012 23 N -0.181 5.181 24 C -0.015 4.015 25 C -0.123 4.123 26 Cl -0.010 7.010 27 C -0.053 4.053 28 C 0.007 3.993 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.198 0.802 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.211 0.789 41 H 0.219 0.781 42 H 0.160 0.840 43 H 0.071 0.929 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.133 1.193 -27.899 28.099 hybrid contribution -0.004 -1.347 2.576 2.907 sum 3.129 -0.155 -25.322 25.515 Atomic orbital electron populations 1.22332 0.97532 1.00468 1.01072 1.20479 0.92920 0.95129 0.85013 0.93073 1.42708 1.78358 1.10159 1.06542 1.19609 1.34212 0.94141 0.88224 0.90346 1.25558 1.03410 0.96815 1.01546 1.69856 1.52927 1.10454 1.29116 0.85194 0.76662 0.78196 0.80083 1.21572 1.22854 1.19075 1.21534 0.93686 0.99573 0.96296 0.93457 1.21629 1.01819 0.99504 0.91705 1.21926 0.94113 1.01226 0.99330 1.22507 0.95704 1.00903 0.84138 1.48153 1.42625 1.32912 1.08909 1.18528 0.79372 0.79737 0.88349 1.90871 1.61612 1.58704 1.34760 1.20788 1.06190 0.94941 0.95953 1.23546 0.90016 1.01280 0.86390 1.68036 1.13136 1.15803 1.21117 1.23517 0.92226 0.86665 0.99074 1.21988 1.05572 0.88266 0.96501 1.98409 1.95374 1.12022 1.95165 1.21648 0.92580 0.95133 0.95923 1.21356 0.94815 0.98251 0.84862 0.94726 0.89968 0.94730 0.80153 0.94432 0.89965 0.89973 0.86902 0.92760 0.87769 0.88184 0.78933 0.78131 0.84033 0.92942 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.14 71.98 0.66 -4.49 16 2 C 0.17 6.47 2.48 44.99 0.11 6.58 16 3 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 4 N -0.74 -37.55 4.52 -322.93 -1.46 -39.01 16 5 C -0.23 -12.86 9.93 84.03 0.83 -12.03 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 8 N -0.97 -62.60 13.06 21.65 0.28 -62.31 16 9 Si 0.97 47.61 29.55 68.60 2.03 49.63 16 10 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 C -0.09 -2.79 1.96 -10.86 -0.02 -2.81 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 15 C -0.11 -2.11 4.85 30.63 0.15 -1.96 16 16 C -0.13 -1.89 6.08 30.67 0.19 -1.70 16 17 C 0.09 1.36 4.91 86.36 0.42 1.79 16 18 N -0.60 -15.88 2.98 -823.15 -2.45 -18.33 16 19 C 0.55 17.37 7.35 86.79 0.64 18.01 16 20 O -0.58 -25.24 16.35 -3.87 -0.06 -25.31 16 21 C -0.17 -3.99 5.16 -20.00 -0.10 -4.09 16 22 C 0.15 2.44 8.55 85.04 0.73 3.17 16 23 N -0.47 -7.52 10.34 -194.68 -2.01 -9.53 16 24 C 0.14 1.96 10.97 84.72 0.93 2.89 16 25 C -0.09 -1.60 6.34 22.38 0.14 -1.46 16 26 Cl -0.04 -0.60 28.98 -2.72 -0.08 -0.68 16 27 C -0.03 -0.57 9.60 22.76 0.22 -0.35 16 28 C 0.13 4.37 5.45 86.22 0.47 4.84 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 2.03 6.40 -2.39 -0.02 2.01 16 31 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.37 20.99 7.61 -92.71 -0.71 20.29 16 33 H 0.25 15.55 8.31 -92.70 -0.77 14.78 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.46 6.36 -2.39 -0.02 1.45 16 36 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 1.09 8.12 -2.39 -0.02 1.07 16 39 H 0.10 1.26 4.67 -2.39 -0.01 1.25 16 40 H 0.19 2.31 6.53 -2.91 -0.02 2.29 16 41 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 43 H 0.05 2.40 6.49 -2.38 -0.02 2.39 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -76.99 368.90 2.40 -74.59 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.32 Total: 26.93 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.83 Total: 4.01 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -5.64 Total: -129.18 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.06 Total: -25.31 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -76.99 2.40 -74.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.571 kcal (2) G-P(sol) polarization free energy of solvation -76.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds