Wall clock time and date at job start Tue Mar 31 2020 21:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46501 * 2 1 4 4 N 1.46496 * 109.47393 * 239.99895 * 2 1 3 5 5 C 1.36934 * 120.00218 * 84.99713 * 4 2 1 6 6 H 1.07999 * 120.00324 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00010 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99762 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99890 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47138 * 89.99856 * 9 7 5 11 11 H 1.48504 * 109.47187 * 209.99663 * 9 7 5 12 12 H 1.48493 * 109.47313 * 330.00007 * 9 7 5 13 13 C 1.53002 * 109.46881 * 119.99288 * 2 1 3 14 14 H 1.08997 * 109.52123 * 180.08250 * 13 2 1 15 15 C 1.53032 * 109.49915 * 300.16429 * 13 2 1 16 16 C 1.53045 * 109.53670 * 181.31626 * 15 13 2 17 17 C 1.53189 * 109.31356 * 298.63401 * 16 15 13 18 18 N 1.46934 * 108.77398 * 54.63677 * 17 16 15 19 19 C 1.34774 * 120.63220 * 126.41086 * 18 17 16 20 20 O 1.21550 * 119.99929 * 354.18154 * 19 18 17 21 21 C 1.47845 * 120.00060 * 174.17746 * 19 18 17 22 22 C 1.39557 * 120.55240 * 139.68424 * 21 19 18 23 23 N 1.31658 * 120.59688 * 180.02562 * 22 21 19 24 24 C 1.31946 * 121.89416 * 359.97438 * 23 22 21 25 25 C 1.38435 * 121.06062 * 0.02562 * 24 23 22 26 26 Cl 1.73604 * 120.35941 * 180.02562 * 25 24 23 27 27 C 1.38514 * 119.27633 * 359.72331 * 25 24 23 28 28 C 1.46923 * 118.73792 * 306.39001 * 18 17 16 29 29 H 1.09001 * 109.47572 * 300.00033 * 1 2 3 30 30 H 1.08998 * 109.47163 * 60.00770 * 1 2 3 31 31 H 1.09000 * 109.47179 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99596 * 264.99929 * 4 2 1 33 33 H 0.97002 * 119.99557 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46576 * 301.33728 * 15 13 2 35 35 H 1.08996 * 109.46455 * 61.31530 * 15 13 2 36 36 H 1.09000 * 109.49690 * 178.68083 * 16 15 13 37 37 H 1.08998 * 109.49733 * 58.58778 * 16 15 13 38 38 H 1.08997 * 109.59090 * 294.84665 * 17 16 15 39 39 H 1.09000 * 109.58874 * 174.41999 * 17 16 15 40 40 H 1.08009 * 119.70259 * 0.02590 * 22 21 19 41 41 H 1.07996 * 119.47036 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.86196 * 180.27499 * 27 25 24 43 43 H 1.08995 * 109.58999 * 173.39578 * 28 18 17 44 44 H 1.09004 * 109.58545 * 293.82336 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9392 -3.4499 9 14 2.7905 0.2698 -5.1181 10 1 4.1531 0.8540 -5.2028 11 1 2.5795 -0.6612 -6.2556 12 1 1.7812 1.3576 -5.1751 13 6 2.0399 -0.7211 1.2494 14 1 3.1299 -0.7203 1.2510 15 6 1.5268 -0.0024 2.4992 16 6 2.0632 -0.7036 3.7493 17 6 1.5532 -2.1478 3.7784 18 7 1.9180 -2.8037 2.5152 19 6 2.5957 -3.9687 2.5170 20 8 3.0031 -4.4332 3.5638 21 6 2.8435 -4.6818 1.2458 22 6 4.0736 -5.2951 1.0046 23 7 4.2954 -5.9299 -0.1273 24 6 3.3770 -6.0139 -1.0710 25 6 2.1311 -5.4325 -0.9090 26 17 0.9361 -5.5549 -2.1623 27 6 1.8463 -4.7575 0.2665 28 6 1.5297 -2.1656 1.2500 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 -1.1524 33 1 3.2472 -2.3967 -4.2421 34 1 1.8681 1.0327 2.4888 35 1 0.4371 -0.0254 2.5097 36 1 1.7165 -0.1774 4.6386 37 1 3.1530 -0.7030 3.7274 38 1 0.4691 -2.1504 3.8916 39 1 2.0109 -2.6804 4.6120 40 1 4.8508 -5.2485 1.7532 41 1 3.6011 -6.5441 -1.9848 42 1 0.8813 -4.2983 0.4217 43 1 1.9719 -2.7097 0.4155 44 1 0.4437 -2.1695 1.1571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:33 Heat of formation + Delta-G solvation = 8.673468 kcal Electronic energy + Delta-G solvation = -28168.588647 eV Core-core repulsion = 24340.075614 eV Total energy + Delta-G solvation = -3828.513033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92738 -39.47466 -37.95724 -36.43287 -35.33102 -33.60210 -32.63315 -31.72342 -31.05235 -29.78357 -27.93064 -26.06076 -24.53707 -24.12770 -23.75352 -22.93397 -21.24794 -19.81528 -18.90794 -17.69263 -17.13573 -17.01170 -16.63716 -16.07161 -15.13980 -15.04500 -14.81633 -14.70397 -14.16050 -14.08143 -13.78634 -13.72213 -13.34305 -13.11260 -12.92351 -12.78392 -12.50604 -12.42854 -11.99230 -11.82315 -11.60172 -11.16446 -11.06282 -11.02202 -10.89241 -10.78920 -10.55807 -10.41274 -10.29096 -10.24698 -9.91203 -9.72332 -9.59539 -9.40435 -8.94637 -8.89595 -8.56894 -6.99662 -5.78072 -3.07043 0.66025 1.04072 2.13476 2.66351 2.93817 3.41280 3.47179 3.48284 3.69240 4.25259 4.47993 4.54895 4.65355 4.72403 4.83062 4.92869 4.95098 5.08231 5.16527 5.29382 5.32254 5.40865 5.54216 5.59987 5.69764 5.75397 5.79640 5.82162 5.82343 5.89259 5.99414 6.02885 6.18186 6.21441 6.31361 6.35501 6.45214 6.51836 6.66266 6.79905 7.02555 7.31734 7.68908 7.77288 8.05371 8.38946 9.50749 10.05691 10.40278 11.43402 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008351 B = 0.005892 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.886836 B = 4750.675191 C = 7079.822607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.179 3.821 3 H 0.051 0.949 4 N -0.724 5.724 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.008 4.008 8 N -0.924 5.924 9 Si 0.902 3.098 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.104 4.104 14 H 0.074 0.926 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.112 3.888 18 N -0.601 5.601 19 C 0.570 3.430 20 O -0.539 6.539 21 C -0.172 4.172 22 C 0.152 3.848 23 N -0.470 5.470 24 C 0.139 3.861 25 C -0.076 4.076 26 Cl -0.037 7.037 27 C -0.033 4.033 28 C 0.099 3.901 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.381 0.619 33 H 0.254 0.746 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.168 0.832 41 H 0.168 0.832 42 H 0.149 0.851 43 H 0.097 0.903 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -4.154 11.515 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.068 3.932 3 H 0.069 0.931 4 N -0.366 5.366 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.204 4.204 8 N -0.571 5.571 9 Si 0.733 3.267 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.209 1.209 13 C -0.124 4.124 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.010 4.010 18 N -0.333 5.333 19 C 0.358 3.642 20 O -0.417 6.417 21 C -0.178 4.178 22 C -0.006 4.006 23 N -0.178 5.178 24 C -0.019 4.019 25 C -0.105 4.105 26 Cl -0.008 7.008 27 C -0.060 4.060 28 C -0.022 4.022 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.215 0.785 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.185 0.815 41 H 0.186 0.814 42 H 0.167 0.833 43 H 0.115 0.885 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.500 -4.686 11.669 13.053 hybrid contribution -0.815 0.782 -1.177 1.631 sum -4.315 -3.904 10.492 11.998 Atomic orbital electron populations 1.22568 0.99419 1.00738 1.00168 1.20193 0.91880 0.95487 0.85595 0.93104 1.42432 1.78280 1.10513 1.05347 1.19168 1.37026 0.93823 0.87268 0.91339 1.24681 1.02025 0.95954 0.97772 1.69635 1.50448 1.08331 1.28727 0.86284 0.77704 0.78672 0.84043 1.21879 1.21840 1.20928 1.21791 1.01051 0.93824 0.95740 0.90736 1.21632 1.00913 0.99316 0.93426 1.21919 1.01548 0.95001 0.98705 1.21636 0.99823 0.93254 0.86293 1.48091 1.55439 1.21584 1.08228 1.18023 0.77558 0.80628 0.87989 1.90761 1.51131 1.67256 1.32562 1.20839 0.96985 1.03895 0.96034 1.22912 0.94408 0.89543 0.93743 1.67880 1.31970 1.16644 1.01264 1.22971 0.86895 0.94219 0.97773 1.21889 0.93706 1.02705 0.92165 1.98412 1.54986 1.96679 1.50712 1.21732 0.99893 0.93809 0.90563 1.22331 1.00450 0.94488 0.84976 0.94146 0.92753 0.93486 0.78494 0.93593 0.91488 0.91337 0.90840 0.91511 0.91361 0.89050 0.81520 0.81443 0.83288 0.88518 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 8.79 37.16 0.33 -2.37 16 2 C 0.18 3.19 2.72 -67.93 -0.19 3.01 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.72 -16.56 5.04 -53.43 -0.27 -16.83 16 5 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 8 N -0.92 -25.93 13.06 55.49 0.72 -25.20 16 9 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C -0.10 -1.54 2.33 -90.50 -0.21 -1.75 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.11 -1.33 4.77 -26.69 -0.13 -1.46 16 16 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 17 C 0.11 1.27 6.44 -3.71 -0.02 1.25 16 18 N -0.60 -8.15 2.97 -173.88 -0.52 -8.67 16 19 C 0.57 8.69 7.34 -12.33 -0.09 8.60 16 20 O -0.54 -9.27 16.36 5.32 0.09 -9.18 16 21 C -0.17 -2.57 5.12 -104.83 -0.54 -3.11 16 22 C 0.15 2.26 10.82 -17.13 -0.19 2.08 16 23 N -0.47 -7.24 10.34 -12.88 -0.13 -7.37 16 24 C 0.14 2.05 10.97 -17.43 -0.19 1.86 16 25 C -0.08 -1.14 6.34 -39.41 -0.25 -1.39 16 26 Cl -0.04 -0.55 28.99 -51.86 -1.50 -2.06 16 27 C -0.03 -0.48 7.32 -38.83 -0.28 -0.77 16 28 C 0.10 1.42 3.72 -3.71 -0.01 1.41 16 29 H 0.04 0.53 6.46 -51.93 -0.34 0.19 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.74 6.32 -51.93 -0.33 0.41 16 32 H 0.38 9.17 6.16 -40.82 -0.25 8.92 16 33 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.74 6.50 -51.93 -0.34 0.40 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.09 7.00 -51.93 -0.36 0.72 16 40 H 0.17 2.21 8.06 -52.48 -0.42 1.79 16 41 H 0.17 2.10 8.06 -52.49 -0.42 1.67 16 42 H 0.15 2.00 6.70 -52.49 -0.35 1.65 16 43 H 0.10 1.59 3.35 -51.93 -0.17 1.42 16 44 H 0.08 1.02 6.17 -51.93 -0.32 0.70 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -29.72 363.67 -9.14 -38.86 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.81 Total: 9.23 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.18 Total: -0.98 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.19 Total: -58.07 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.72 -9.14 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.534 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds