Wall clock time and date at job start Tue Mar 31 2020 21:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46501 * 2 1 4 4 N 1.46496 * 109.47393 * 239.99895 * 2 1 3 5 5 C 1.36934 * 120.00218 * 84.99713 * 4 2 1 6 6 H 1.07999 * 120.00324 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00010 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99762 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99890 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47138 * 89.99856 * 9 7 5 11 11 H 1.48504 * 109.47187 * 209.99663 * 9 7 5 12 12 H 1.48493 * 109.47313 * 330.00007 * 9 7 5 13 13 C 1.53002 * 109.46881 * 119.99288 * 2 1 3 14 14 H 1.08997 * 109.52123 * 180.08250 * 13 2 1 15 15 C 1.53032 * 109.49915 * 300.16429 * 13 2 1 16 16 C 1.53045 * 109.53670 * 181.31626 * 15 13 2 17 17 C 1.53189 * 109.31356 * 298.63401 * 16 15 13 18 18 N 1.46934 * 108.77398 * 54.63677 * 17 16 15 19 19 C 1.34774 * 120.63220 * 126.41086 * 18 17 16 20 20 O 1.21550 * 119.99929 * 354.18154 * 19 18 17 21 21 C 1.47845 * 120.00060 * 174.17746 * 19 18 17 22 22 C 1.39557 * 120.55240 * 139.68424 * 21 19 18 23 23 N 1.31658 * 120.59688 * 180.02562 * 22 21 19 24 24 C 1.31946 * 121.89416 * 359.97438 * 23 22 21 25 25 C 1.38435 * 121.06062 * 0.02562 * 24 23 22 26 26 Cl 1.73604 * 120.35941 * 180.02562 * 25 24 23 27 27 C 1.38514 * 119.27633 * 359.72331 * 25 24 23 28 28 C 1.46923 * 118.73792 * 306.39001 * 18 17 16 29 29 H 1.09001 * 109.47572 * 300.00033 * 1 2 3 30 30 H 1.08998 * 109.47163 * 60.00770 * 1 2 3 31 31 H 1.09000 * 109.47179 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99596 * 264.99929 * 4 2 1 33 33 H 0.97002 * 119.99557 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46576 * 301.33728 * 15 13 2 35 35 H 1.08996 * 109.46455 * 61.31530 * 15 13 2 36 36 H 1.09000 * 109.49690 * 178.68083 * 16 15 13 37 37 H 1.08998 * 109.49733 * 58.58778 * 16 15 13 38 38 H 1.08997 * 109.59090 * 294.84665 * 17 16 15 39 39 H 1.09000 * 109.58874 * 174.41999 * 17 16 15 40 40 H 1.08009 * 119.70259 * 0.02590 * 22 21 19 41 41 H 1.07996 * 119.47036 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.86196 * 180.27499 * 27 25 24 43 43 H 1.08995 * 109.58999 * 173.39578 * 28 18 17 44 44 H 1.09004 * 109.58545 * 293.82336 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9392 -3.4499 9 14 2.7905 0.2698 -5.1181 10 1 4.1531 0.8540 -5.2028 11 1 2.5795 -0.6612 -6.2556 12 1 1.7812 1.3576 -5.1751 13 6 2.0399 -0.7211 1.2494 14 1 3.1299 -0.7203 1.2510 15 6 1.5268 -0.0024 2.4992 16 6 2.0632 -0.7036 3.7493 17 6 1.5532 -2.1478 3.7784 18 7 1.9180 -2.8037 2.5152 19 6 2.5957 -3.9687 2.5170 20 8 3.0031 -4.4332 3.5638 21 6 2.8435 -4.6818 1.2458 22 6 4.0736 -5.2951 1.0046 23 7 4.2954 -5.9299 -0.1273 24 6 3.3770 -6.0139 -1.0710 25 6 2.1311 -5.4325 -0.9090 26 17 0.9361 -5.5549 -2.1623 27 6 1.8463 -4.7575 0.2665 28 6 1.5297 -2.1656 1.2500 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 -1.1524 33 1 3.2472 -2.3967 -4.2421 34 1 1.8681 1.0327 2.4888 35 1 0.4371 -0.0254 2.5097 36 1 1.7165 -0.1774 4.6386 37 1 3.1530 -0.7030 3.7274 38 1 0.4691 -2.1504 3.8916 39 1 2.0109 -2.6804 4.6120 40 1 4.8508 -5.2485 1.7532 41 1 3.6011 -6.5441 -1.9848 42 1 0.8813 -4.2983 0.4217 43 1 1.9719 -2.7097 0.4155 44 1 0.4437 -2.1695 1.1571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568412371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:32 Heat of formation + Delta-G solvation = -8.442795 kcal Electronic energy + Delta-G solvation = -28169.330864 eV Core-core repulsion = 24340.075614 eV Total energy + Delta-G solvation = -3829.255250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08591 -40.62311 -39.21494 -37.62320 -36.77788 -34.80581 -34.22277 -32.91982 -32.23613 -31.30805 -29.34776 -27.17415 -26.13048 -25.30889 -24.99579 -24.27116 -22.38892 -21.06628 -20.10924 -19.23103 -18.52993 -18.27287 -17.83985 -17.22549 -16.65824 -16.30555 -16.09169 -15.86466 -15.50454 -15.38642 -15.15462 -15.14696 -14.45694 -14.31129 -14.27064 -13.93906 -13.84850 -13.58147 -13.29713 -13.02212 -12.95363 -12.82599 -12.62794 -12.32294 -12.25528 -12.12200 -11.88424 -11.81230 -11.75823 -11.49311 -11.32592 -11.20510 -10.85931 -10.85225 -10.59386 -10.07869 -9.67810 -8.89714 -7.83276 -5.09800 -0.50768 -0.12976 0.94868 1.47733 1.49072 1.50549 1.56988 1.83519 2.52035 2.61046 3.10421 3.34668 3.49347 3.51658 3.58165 3.72211 3.87926 3.89865 4.00186 4.08691 4.11832 4.16702 4.32746 4.42502 4.56603 4.65579 4.66691 4.67909 4.71154 4.84546 4.85818 4.98694 5.01521 5.13459 5.16797 5.22374 5.26437 5.38339 5.46430 5.50849 5.62844 5.71654 6.15963 6.37228 6.60036 6.89300 7.45043 8.20360 8.43457 9.37574 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008351 B = 0.005892 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.886836 B = 4750.675191 C = 7079.822607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.174 3.826 3 H 0.042 0.958 4 N -0.734 5.734 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.062 4.062 8 N -0.948 5.948 9 Si 0.954 3.046 10 H -0.295 1.295 11 H -0.299 1.299 12 H -0.275 1.275 13 C -0.095 4.095 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.106 3.894 18 N -0.595 5.595 19 C 0.570 3.430 20 O -0.562 6.562 21 C -0.179 4.179 22 C 0.145 3.855 23 N -0.482 5.482 24 C 0.133 3.867 25 C -0.086 4.086 26 Cl -0.039 7.039 27 C -0.030 4.030 28 C 0.106 3.894 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.373 0.627 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.160 0.840 43 H 0.073 0.927 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -2.966 12.968 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.060 0.940 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.256 4.256 8 N -0.597 5.597 9 Si 0.785 3.215 10 H -0.223 1.223 11 H -0.226 1.226 12 H -0.200 1.200 13 C -0.115 4.115 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.164 4.164 17 C -0.015 4.015 18 N -0.326 5.326 19 C 0.358 3.642 20 O -0.442 6.442 21 C -0.185 4.185 22 C -0.013 4.013 23 N -0.190 5.190 24 C -0.024 4.024 25 C -0.115 4.115 26 Cl -0.010 7.010 27 C -0.057 4.057 28 C -0.016 4.016 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.196 0.804 41 H 0.203 0.797 42 H 0.177 0.823 43 H 0.092 0.908 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.898 -3.447 13.156 14.455 hybrid contribution -0.397 0.477 -1.571 1.689 sum -5.295 -2.969 11.585 13.079 Atomic orbital electron populations 1.22410 0.97273 1.01206 1.00918 1.20410 0.93208 0.94859 0.85021 0.93977 1.42606 1.78567 1.10293 1.06089 1.19456 1.35204 0.93915 0.88408 0.91321 1.25285 1.03215 0.96788 1.00330 1.69763 1.51972 1.09295 1.28718 0.85433 0.77380 0.77657 0.80990 1.22319 1.22597 1.20001 1.21633 0.99491 0.94313 0.96046 0.93297 1.21616 1.01911 0.99268 0.91858 1.21883 1.00634 0.94473 0.99377 1.21896 1.01366 0.93417 0.84788 1.48122 1.54584 1.20990 1.08889 1.18031 0.77541 0.81047 0.87587 1.90747 1.52267 1.68009 1.33207 1.20891 0.97132 1.04172 0.96265 1.23165 0.94878 0.89316 0.93909 1.67913 1.32291 1.17182 1.01610 1.23298 0.86755 0.94106 0.98254 1.21983 0.93915 1.03242 0.92363 1.98406 1.55029 1.96724 1.50829 1.21847 1.00233 0.93311 0.90283 1.22196 1.01002 0.93794 0.84601 0.90449 0.94915 0.93143 0.79404 0.94427 0.90760 0.89476 0.87659 0.93005 0.88836 0.89569 0.80416 0.79746 0.82291 0.90835 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 8.79 71.98 0.63 -4.02 16 2 C 0.17 5.96 2.72 44.99 0.12 6.08 16 3 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 4 N -0.73 -33.49 5.04 -322.95 -1.63 -35.12 16 5 C -0.24 -12.39 9.93 84.03 0.83 -11.56 16 6 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 7 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 8 N -0.95 -53.89 13.06 21.65 0.28 -53.61 16 9 Si 0.95 44.93 29.55 68.60 2.03 46.96 16 10 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 C -0.09 -2.65 2.33 -10.72 -0.02 -2.68 16 14 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.11 -2.13 4.77 30.62 0.15 -1.98 16 16 C -0.13 -2.19 6.08 30.67 0.19 -2.01 16 17 C 0.11 2.09 6.44 86.36 0.56 2.65 16 18 N -0.59 -15.13 2.97 -822.31 -2.44 -17.57 16 19 C 0.57 16.98 7.34 86.79 0.64 17.62 16 20 O -0.56 -19.02 16.36 -3.87 -0.06 -19.08 16 21 C -0.18 -5.35 5.12 -20.00 -0.10 -5.46 16 22 C 0.15 4.36 10.82 85.04 0.92 5.28 16 23 N -0.48 -14.97 10.34 -194.67 -2.01 -16.99 16 24 C 0.13 3.95 10.97 84.72 0.93 4.88 16 25 C -0.09 -2.60 6.34 22.38 0.14 -2.46 16 26 Cl -0.04 -1.16 28.99 -2.72 -0.08 -1.24 16 27 C -0.03 -0.87 7.32 22.75 0.17 -0.71 16 28 C 0.11 2.87 3.72 86.36 0.32 3.19 16 29 H 0.08 1.70 6.46 -2.39 -0.02 1.69 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.44 6.32 -2.39 -0.02 1.43 16 32 H 0.37 18.13 6.16 -92.71 -0.57 17.56 16 33 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.43 6.50 -2.39 -0.02 1.42 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 40 H 0.18 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.19 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.16 4.16 6.70 -2.91 -0.02 4.14 16 43 H 0.07 2.40 3.35 -2.39 -0.01 2.39 16 44 H 0.09 2.22 6.17 -2.38 -0.01 2.20 16 Total: -1.00 -63.86 363.67 2.48 -61.37 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.47 Total: 29.38 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.93 Total: 5.90 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -5.80 Total: -123.29 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.06 Total: -19.08 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -63.86 2.48 -61.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.930 kcal (2) G-P(sol) polarization free energy of solvation -63.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds