Wall clock time and date at job start Tue Mar 31 2020 21:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08989 * 109.47341 * 2 1 4 4 N 1.46504 * 109.47049 * 239.99669 * 2 1 3 5 5 C 1.36937 * 119.99730 * 85.00303 * 4 2 1 6 6 H 1.07994 * 119.99813 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99578 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99702 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47330 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46941 * 119.99959 * 9 7 5 12 12 H 1.48503 * 109.47458 * 240.00160 * 9 7 5 13 13 C 1.53004 * 109.46881 * 120.00135 * 2 1 3 14 14 H 1.09004 * 109.52614 * 59.91584 * 13 2 1 15 15 C 1.53042 * 109.49647 * 299.83705 * 13 2 1 16 16 C 1.53070 * 109.65882 * 178.75031 * 15 13 2 17 17 C 1.53198 * 109.29771 * 61.15352 * 16 15 13 18 18 N 1.46928 * 108.89015 * 305.57835 * 17 16 15 19 19 C 1.34781 * 120.63188 * 233.55944 * 18 17 16 20 20 O 1.21520 * 119.99873 * 174.69738 * 19 18 17 21 21 C 1.48070 * 119.99677 * 354.69925 * 19 18 17 22 22 C 1.39869 * 120.93302 * 322.47798 * 21 19 18 23 23 C 1.38082 * 119.01829 * 179.97438 * 22 21 19 24 24 N 1.31850 * 120.94080 * 0.02562 * 23 22 21 25 25 C 1.31754 * 122.07061 * 359.97438 * 24 23 22 26 26 C 1.38355 * 120.87122 * 359.74427 * 25 24 23 27 27 Cl 1.73608 * 120.51716 * 180.28106 * 26 25 24 28 28 C 1.46926 * 118.73800 * 53.53520 * 18 17 16 29 29 H 1.08993 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46841 * 300.00169 * 1 2 3 31 31 H 1.08997 * 109.47038 * 60.00123 * 1 2 3 32 32 H 0.97004 * 119.99890 * 265.00279 * 4 2 1 33 33 H 0.97004 * 119.99788 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.45830 * 298.70537 * 15 13 2 35 35 H 1.08997 * 109.46334 * 58.66250 * 15 13 2 36 36 H 1.08995 * 109.39186 * 301.27845 * 16 15 13 37 37 H 1.08998 * 109.62300 * 181.16589 * 16 15 13 38 38 H 1.09000 * 109.58767 * 185.72466 * 17 16 15 39 39 H 1.08993 * 109.58707 * 65.43212 * 17 16 15 40 40 H 1.08001 * 120.48754 * 359.96088 * 22 21 19 41 41 H 1.08000 * 119.52863 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.56381 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.58927 * 66.18091 * 28 18 17 44 44 H 1.09006 * 109.58861 * 186.46506 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6124 -0.6619 -3.5089 8 7 2.9254 -1.9390 -3.4498 9 14 2.7901 0.2698 -5.1182 10 1 2.3753 1.6820 -4.9211 11 1 4.2071 0.2278 -5.5605 12 1 1.9299 -0.3595 -6.1523 13 6 2.0400 -0.7213 1.2493 14 1 1.6759 -1.7487 1.2509 15 6 1.5335 0.0020 2.4992 16 6 2.0158 -0.7345 3.7514 17 6 3.5475 -0.7380 3.7783 18 7 4.0442 -1.3006 2.5151 19 6 4.9160 -2.3284 2.5169 20 8 5.2452 -2.8477 1.4687 21 6 5.4727 -2.8248 3.7960 22 6 5.7943 -1.9409 4.8313 23 6 6.3107 -2.4469 6.0078 24 7 6.5019 -3.7422 6.1624 25 6 6.2132 -4.6101 5.2141 26 6 5.6864 -4.1917 4.0052 27 17 5.3026 -5.3440 2.7647 28 6 3.5719 -0.7217 1.2500 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6319 -1.1525 33 1 3.2487 -2.3962 -4.2419 34 1 1.9182 1.0219 2.5095 35 1 0.4438 0.0253 2.4889 36 1 1.6500 -1.7611 3.7308 37 1 1.6375 -0.2308 4.6409 38 1 3.8969 -1.3472 4.6119 39 1 3.9133 0.2823 3.8927 40 1 5.6412 -0.8785 4.7121 41 1 6.5614 -1.7719 6.8127 42 1 6.3866 -5.6625 5.3842 43 1 3.9376 0.3009 1.1569 44 1 3.9396 -1.3186 0.4152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:53 Heat of formation + Delta-G solvation = 14.976268 kcal Electronic energy + Delta-G solvation = -27373.031051 eV Core-core repulsion = 23544.791328 eV Total energy + Delta-G solvation = -3828.239723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11428 -39.62534 -37.79551 -36.74768 -35.55645 -33.47496 -32.57208 -31.81333 -31.46657 -29.83559 -28.24295 -26.11940 -24.72611 -24.05959 -23.54526 -22.89591 -21.28961 -19.82789 -19.50119 -17.85289 -17.09107 -17.05155 -16.75459 -16.04120 -15.40321 -15.16330 -14.84863 -14.65533 -14.42409 -14.25463 -13.96515 -13.71347 -13.48662 -13.15467 -12.91587 -12.81827 -12.49111 -12.31270 -12.19628 -12.01977 -11.37768 -11.31247 -11.17951 -11.03608 -10.86106 -10.73424 -10.65035 -10.41050 -10.28083 -10.14510 -10.04404 -9.83747 -9.59426 -9.50970 -9.29065 -8.88934 -8.53615 -6.91195 -5.70396 -3.00045 0.33819 0.49925 1.81828 2.63955 2.87194 3.31119 3.46253 3.51183 3.54078 3.96841 4.07804 4.26926 4.39381 4.59244 4.68071 4.72819 4.85274 4.94345 5.10453 5.15872 5.23294 5.29533 5.38511 5.42271 5.60660 5.64728 5.73883 5.77973 5.88608 5.97758 5.98650 6.07945 6.17438 6.20065 6.40735 6.45434 6.47394 6.66977 6.71157 6.91110 7.09914 7.36154 7.37565 7.74679 8.11601 8.46841 9.58177 10.15764 10.50054 11.51661 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003366 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.872442 B = 8316.436514 C = 9533.329090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.093 3.907 18 N -0.601 5.601 19 C 0.548 3.452 20 O -0.495 6.495 21 C -0.070 4.070 22 C -0.136 4.136 23 C 0.095 3.905 24 N -0.459 5.459 25 C 0.111 3.889 26 C -0.050 4.050 27 Cl -0.019 7.019 28 C 0.124 3.876 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.068 0.932 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 0.316 23.813 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.734 3.266 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.123 4.123 14 H 0.089 0.911 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.030 4.030 18 N -0.334 5.334 19 C 0.333 3.667 20 O -0.369 6.369 21 C -0.082 4.082 22 C -0.156 4.156 23 C -0.061 4.061 24 N -0.168 5.168 25 C -0.048 4.048 26 C -0.080 4.080 27 Cl 0.010 6.990 28 C 0.003 3.997 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.188 0.812 43 H 0.086 0.914 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.542 -0.238 23.729 23.993 hybrid contribution -0.305 0.419 -1.801 1.874 sum 3.237 0.181 21.928 22.166 Atomic orbital electron populations 1.22483 0.99307 1.00811 0.99877 1.20164 0.91848 0.95214 0.85754 0.93509 1.42469 1.78073 1.10778 1.05285 1.19225 1.36683 0.93797 0.87345 0.91251 1.24736 1.02178 0.95921 0.97965 1.69681 1.50607 1.08586 1.28690 0.86183 0.77293 0.78755 0.84330 1.20638 1.21930 1.21978 1.21763 0.94524 1.00615 0.95401 0.91118 1.21636 1.01193 0.99025 0.93436 1.21932 0.94603 1.01719 0.98953 1.22161 0.95339 0.99151 0.86325 1.48068 1.43792 1.33268 1.08290 1.18026 0.80287 0.80439 0.87911 1.90928 1.58654 1.55553 1.31728 1.20439 0.99462 0.92626 0.95690 1.22570 0.98552 1.01498 0.93009 1.22861 0.94749 0.91853 0.96642 1.67686 1.14632 1.03559 1.30927 1.22841 0.94384 1.00601 0.86952 1.22284 1.01493 0.91017 0.93218 1.98457 1.91915 1.57165 1.51477 1.21780 0.94106 0.98951 0.84897 0.93619 0.94309 0.92858 0.78154 0.93577 0.91806 0.91094 0.91595 0.90811 0.89614 0.90974 0.82889 0.81403 0.81193 0.91408 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.15 37.16 0.34 -2.53 16 2 C 0.18 3.42 2.48 -67.92 -0.17 3.25 16 3 H 0.05 0.90 8.08 -51.94 -0.42 0.48 16 4 N -0.72 -17.87 4.52 -53.42 -0.24 -18.11 16 5 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 9 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 C -0.10 -1.61 1.98 -90.50 -0.18 -1.79 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.11 -1.33 4.85 -26.67 -0.13 -1.46 16 16 C -0.13 -1.26 6.09 -26.59 -0.16 -1.42 16 17 C 0.09 0.87 4.88 -3.71 -0.02 0.85 16 18 N -0.60 -8.25 2.97 -173.79 -0.52 -8.77 16 19 C 0.55 8.53 7.13 -12.22 -0.09 8.44 16 20 O -0.50 -9.97 14.76 5.35 0.08 -9.89 16 21 C -0.07 -0.86 5.25 -104.62 -0.55 -1.40 16 22 C -0.14 -1.16 7.47 -39.03 -0.29 -1.45 16 23 C 0.10 0.73 11.17 -17.60 -0.20 0.53 16 24 N -0.46 -4.40 10.33 -13.27 -0.14 -4.54 16 25 C 0.11 1.08 10.99 -17.54 -0.19 0.89 16 26 C -0.05 -0.60 6.36 -38.91 -0.25 -0.85 16 27 Cl -0.02 -0.27 26.97 -51.86 -1.40 -1.67 16 28 C 0.12 2.05 5.48 -3.71 -0.02 2.03 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.55 6.41 -51.93 -0.33 0.21 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.38 10.39 7.62 -40.82 -0.31 10.07 16 33 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.67 4.54 -51.93 -0.24 0.44 16 39 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.15 0.96 6.36 -52.49 -0.33 0.63 16 41 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.11 2.34 6.51 -51.93 -0.34 2.00 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -33.60 365.40 -9.23 -42.83 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.07 Total: 6.96 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.15 Total: -2.09 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.17 Total: -59.29 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.40 Total: -1.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.60 -9.23 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.804 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds