Wall clock time and date at job start Tue Mar 31 2020 21:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08989 * 109.47341 * 2 1 4 4 N 1.46504 * 109.47049 * 239.99669 * 2 1 3 5 5 C 1.36937 * 119.99730 * 85.00303 * 4 2 1 6 6 H 1.07994 * 119.99813 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99578 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99702 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47330 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46941 * 119.99959 * 9 7 5 12 12 H 1.48503 * 109.47458 * 240.00160 * 9 7 5 13 13 C 1.53004 * 109.46881 * 120.00135 * 2 1 3 14 14 H 1.09004 * 109.52614 * 59.91584 * 13 2 1 15 15 C 1.53042 * 109.49647 * 299.83705 * 13 2 1 16 16 C 1.53070 * 109.65882 * 178.75031 * 15 13 2 17 17 C 1.53198 * 109.29771 * 61.15352 * 16 15 13 18 18 N 1.46928 * 108.89015 * 305.57835 * 17 16 15 19 19 C 1.34781 * 120.63188 * 233.55944 * 18 17 16 20 20 O 1.21520 * 119.99873 * 174.69738 * 19 18 17 21 21 C 1.48070 * 119.99677 * 354.69925 * 19 18 17 22 22 C 1.39869 * 120.93302 * 322.47798 * 21 19 18 23 23 C 1.38082 * 119.01829 * 179.97438 * 22 21 19 24 24 N 1.31850 * 120.94080 * 0.02562 * 23 22 21 25 25 C 1.31754 * 122.07061 * 359.97438 * 24 23 22 26 26 C 1.38355 * 120.87122 * 359.74427 * 25 24 23 27 27 Cl 1.73608 * 120.51716 * 180.28106 * 26 25 24 28 28 C 1.46926 * 118.73800 * 53.53520 * 18 17 16 29 29 H 1.08993 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46841 * 300.00169 * 1 2 3 31 31 H 1.08997 * 109.47038 * 60.00123 * 1 2 3 32 32 H 0.97004 * 119.99890 * 265.00279 * 4 2 1 33 33 H 0.97004 * 119.99788 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.45830 * 298.70537 * 15 13 2 35 35 H 1.08997 * 109.46334 * 58.66250 * 15 13 2 36 36 H 1.08995 * 109.39186 * 301.27845 * 16 15 13 37 37 H 1.08998 * 109.62300 * 181.16589 * 16 15 13 38 38 H 1.09000 * 109.58767 * 185.72466 * 17 16 15 39 39 H 1.08993 * 109.58707 * 65.43212 * 17 16 15 40 40 H 1.08001 * 120.48754 * 359.96088 * 22 21 19 41 41 H 1.08000 * 119.52863 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.56381 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.58927 * 66.18091 * 28 18 17 44 44 H 1.09006 * 109.58861 * 186.46506 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6124 -0.6619 -3.5089 8 7 2.9254 -1.9390 -3.4498 9 14 2.7901 0.2698 -5.1182 10 1 2.3753 1.6820 -4.9211 11 1 4.2071 0.2278 -5.5605 12 1 1.9299 -0.3595 -6.1523 13 6 2.0400 -0.7213 1.2493 14 1 1.6759 -1.7487 1.2509 15 6 1.5335 0.0020 2.4992 16 6 2.0158 -0.7345 3.7514 17 6 3.5475 -0.7380 3.7783 18 7 4.0442 -1.3006 2.5151 19 6 4.9160 -2.3284 2.5169 20 8 5.2452 -2.8477 1.4687 21 6 5.4727 -2.8248 3.7960 22 6 5.7943 -1.9409 4.8313 23 6 6.3107 -2.4469 6.0078 24 7 6.5019 -3.7422 6.1624 25 6 6.2132 -4.6101 5.2141 26 6 5.6864 -4.1917 4.0052 27 17 5.3026 -5.3440 2.7647 28 6 3.5719 -0.7217 1.2500 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6319 -1.1525 33 1 3.2487 -2.3962 -4.2419 34 1 1.9182 1.0219 2.5095 35 1 0.4438 0.0253 2.4889 36 1 1.6500 -1.7611 3.7308 37 1 1.6375 -0.2308 4.6409 38 1 3.8969 -1.3472 4.6119 39 1 3.9133 0.2823 3.8927 40 1 5.6412 -0.8785 4.7121 41 1 6.5614 -1.7719 6.8127 42 1 6.3866 -5.6625 5.3842 43 1 3.9376 0.3009 1.1569 44 1 3.9396 -1.3186 0.4152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568412954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:52 Heat of formation + Delta-G solvation = -7.554857 kcal Electronic energy + Delta-G solvation = -27374.008074 eV Core-core repulsion = 23544.791328 eV Total energy + Delta-G solvation = -3829.216746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03913 -40.60911 -39.06365 -37.70964 -37.02044 -34.88540 -33.78537 -33.10425 -32.22635 -31.33408 -29.84827 -27.15764 -26.20143 -24.99553 -24.86432 -23.99897 -22.42970 -21.18530 -20.63099 -19.18055 -18.71411 -17.97472 -17.58884 -17.08470 -16.75805 -16.38885 -16.15328 -15.59044 -15.56578 -15.41306 -15.18908 -14.98505 -14.81054 -14.32138 -14.21003 -14.03224 -13.86064 -13.45519 -13.17974 -13.12201 -13.01972 -12.82319 -12.54587 -12.38102 -12.28118 -12.10974 -12.03390 -11.84360 -11.69153 -11.48165 -11.33247 -11.19798 -10.96140 -10.87870 -10.52829 -10.07004 -9.68148 -8.98828 -7.91652 -5.20300 -0.51569 -0.20964 0.92786 1.44574 1.45961 1.55063 1.55647 1.82458 2.53206 2.56220 3.15588 3.34998 3.42058 3.53106 3.65511 3.71777 3.84032 3.93796 4.03155 4.10111 4.18833 4.27469 4.41419 4.44255 4.54863 4.58129 4.62491 4.74623 4.76702 4.85665 4.91538 4.92318 5.02953 5.05116 5.16340 5.28357 5.33969 5.37509 5.47172 5.50042 5.56504 5.63948 6.27810 6.29319 6.65993 6.98069 7.34401 8.12720 8.34026 9.32016 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003366 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.872442 B = 8316.436514 C = 9533.329090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.052 0.948 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.079 0.921 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.299 1.299 12 H -0.297 1.297 13 C -0.090 4.090 14 H 0.044 0.956 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.085 3.915 18 N -0.596 5.596 19 C 0.540 3.460 20 O -0.559 6.559 21 C -0.088 4.088 22 C -0.122 4.122 23 C 0.112 3.888 24 N -0.467 5.467 25 C 0.116 3.884 26 C -0.070 4.070 27 Cl -0.051 7.051 28 C 0.131 3.869 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.367 0.633 33 H 0.247 0.753 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.183 0.817 41 H 0.214 0.786 42 H 0.188 0.812 43 H 0.075 0.925 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 3.451 27.943 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.070 0.930 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.097 0.903 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.185 1.185 11 H -0.226 1.226 12 H -0.224 1.224 13 C -0.110 4.110 14 H 0.062 0.938 15 C -0.146 4.146 16 C -0.167 4.167 17 C -0.036 4.036 18 N -0.328 5.328 19 C 0.328 3.672 20 O -0.437 6.437 21 C -0.100 4.100 22 C -0.142 4.142 23 C -0.045 4.045 24 N -0.177 5.177 25 C -0.042 4.042 26 C -0.100 4.100 27 Cl -0.022 7.022 28 C 0.009 3.991 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.198 0.802 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.200 0.800 41 H 0.231 0.769 42 H 0.205 0.795 43 H 0.093 0.907 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.096 2.961 27.941 28.268 hybrid contribution -0.185 -0.464 -2.914 2.957 sum 2.911 2.498 25.027 25.319 Atomic orbital electron populations 1.22330 0.97561 1.00405 1.01092 1.20481 0.92904 0.95126 0.85025 0.93019 1.42724 1.78341 1.10143 1.06583 1.19655 1.34148 0.94149 0.88205 0.90265 1.25563 1.03401 0.96783 1.01571 1.69872 1.52975 1.10472 1.29059 0.85127 0.76511 0.78433 0.80066 1.18464 1.22622 1.22413 1.21602 0.93708 0.99388 0.96334 0.93766 1.21625 1.01765 0.99508 0.91742 1.21942 0.94393 1.01036 0.99297 1.22605 0.95525 1.01018 0.84413 1.48137 1.43017 1.32664 1.08938 1.18644 0.79978 0.80089 0.88518 1.90895 1.60935 1.57591 1.34270 1.20306 1.01198 0.93347 0.95159 1.22883 0.97203 1.02269 0.91852 1.23608 0.92203 0.91592 0.97054 1.67816 1.14764 1.04569 1.30512 1.23070 0.93419 1.01713 0.85968 1.22452 1.03430 0.90645 0.93428 1.98441 1.92356 1.58338 1.53107 1.21411 0.94711 0.98064 0.84918 0.94848 0.89941 0.94686 0.80214 0.94465 0.89908 0.90090 0.93163 0.86664 0.87521 0.87682 0.79960 0.76916 0.79530 0.90667 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.15 71.98 0.66 -4.56 16 2 C 0.17 6.55 2.48 44.99 0.11 6.66 16 3 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 4 N -0.74 -38.01 4.52 -322.94 -1.46 -39.47 16 5 C -0.23 -12.94 9.93 84.03 0.83 -12.11 16 6 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 8 N -0.97 -63.22 13.06 21.65 0.28 -62.94 16 9 Si 0.97 47.89 29.55 68.60 2.03 49.92 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 12 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 13 C -0.09 -2.83 1.98 -10.71 -0.02 -2.85 16 14 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 15 C -0.11 -2.13 4.85 30.63 0.15 -1.98 16 16 C -0.13 -1.89 6.09 30.68 0.19 -1.70 16 17 C 0.08 1.25 4.88 86.36 0.42 1.68 16 18 N -0.60 -16.09 2.97 -822.04 -2.45 -18.54 16 19 C 0.54 17.39 7.13 86.85 0.62 18.01 16 20 O -0.56 -24.55 14.76 -3.78 -0.06 -24.61 16 21 C -0.09 -2.08 5.25 -19.86 -0.10 -2.18 16 22 C -0.12 -1.62 7.47 22.63 0.17 -1.45 16 23 C 0.11 1.18 11.17 84.65 0.95 2.12 16 24 N -0.47 -7.45 10.33 -195.91 -2.02 -9.47 16 25 C 0.12 2.10 10.99 84.73 0.93 3.04 16 26 C -0.07 -1.68 6.36 22.71 0.14 -1.53 16 27 Cl -0.05 -1.53 26.97 -2.72 -0.07 -1.60 16 28 C 0.13 4.50 5.48 86.36 0.47 4.97 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 2.06 6.41 -2.39 -0.02 2.05 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.37 21.29 7.62 -92.71 -0.71 20.58 16 33 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.47 6.36 -2.39 -0.02 1.45 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.18 4.54 -2.39 -0.01 1.17 16 39 H 0.11 0.97 8.10 -2.39 -0.02 0.95 16 40 H 0.18 1.31 6.36 -2.91 -0.02 1.29 16 41 H 0.21 0.33 8.06 -2.91 -0.02 0.30 16 42 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.05 2.37 6.51 -2.38 -0.02 2.35 16 Total: -1.00 -81.70 365.40 2.56 -79.14 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.32 Total: 23.85 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.98 Total: 3.72 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.65 Total: -130.42 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.06 Total: -24.61 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.60 kcal Total: -81.70 2.56 -79.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.582 kcal (2) G-P(sol) polarization free energy of solvation -81.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds