Wall clock time and date at job start Tue Mar 31 2020 21:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47441 * 2 1 4 4 N 1.46502 * 109.47383 * 239.99322 * 2 1 3 5 5 C 1.36938 * 119.99684 * 85.00361 * 4 2 1 6 6 H 1.08000 * 120.00000 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99562 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99864 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47210 * 119.99474 * 9 7 5 12 12 H 1.48500 * 109.47137 * 239.99932 * 9 7 5 13 13 C 1.53001 * 109.47001 * 119.99521 * 2 1 3 14 14 H 1.08995 * 109.50201 * 179.97438 * 13 2 1 15 15 C 1.53039 * 109.49697 * 300.00120 * 13 2 1 16 16 C 1.53041 * 109.54208 * 181.31737 * 15 13 2 17 17 C 1.53193 * 109.30862 * 298.63544 * 16 15 13 18 18 N 1.46926 * 108.77918 * 54.63408 * 17 16 15 19 19 C 1.34775 * 120.63606 * 126.36611 * 18 17 16 20 20 O 1.21525 * 120.00436 * 185.36335 * 19 18 17 21 21 C 1.48077 * 119.99691 * 5.36730 * 19 18 17 22 22 C 1.39869 * 120.93423 * 37.61254 * 21 19 18 23 23 C 1.38081 * 119.02141 * 179.97438 * 22 21 19 24 24 N 1.31844 * 120.93972 * 0.02596 * 23 22 21 25 25 C 1.31757 * 122.07231 * 359.95313 * 24 23 22 26 26 C 1.38357 * 120.86966 * 0.04258 * 25 24 23 27 27 Cl 1.73606 * 120.51571 * 180.25584 * 26 25 24 28 28 C 1.46929 * 118.73420 * 306.64428 * 18 17 16 29 29 H 1.09002 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47697 * 300.00600 * 1 2 3 31 31 H 1.09000 * 109.47238 * 60.00746 * 1 2 3 32 32 H 0.96996 * 119.99730 * 265.00477 * 4 2 1 33 33 H 0.96994 * 120.00433 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46281 * 61.29550 * 15 13 2 35 35 H 1.09005 * 109.45370 * 301.32959 * 15 13 2 36 36 H 1.08996 * 109.50300 * 178.68438 * 16 15 13 37 37 H 1.08994 * 109.52510 * 58.59764 * 16 15 13 38 38 H 1.09001 * 109.59090 * 294.84508 * 17 16 15 39 39 H 1.09004 * 109.58754 * 174.41904 * 17 16 15 40 40 H 1.08005 * 120.48830 * 359.95417 * 22 21 19 41 41 H 1.08000 * 119.53098 * 179.97438 * 23 22 21 42 42 H 1.08006 * 119.56305 * 180.02562 * 25 24 23 43 43 H 1.09007 * 109.58547 * 173.14400 * 28 18 17 44 44 H 1.09002 * 109.58475 * 293.56666 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6115 -0.6623 -3.5091 8 7 2.9245 -1.9394 -3.4499 9 14 2.7893 0.2692 -5.1185 10 1 2.3745 1.6814 -4.9214 11 1 4.2061 0.2263 -5.5613 12 1 1.9282 -0.3595 -6.1521 13 6 2.0399 -0.7212 1.2493 14 1 3.1299 -0.7219 1.2496 15 6 1.5301 -0.0001 2.4992 16 6 2.0665 -0.7012 3.7493 17 6 1.5531 -2.1443 3.7804 18 7 1.9148 -2.8022 2.5174 19 6 2.5904 -3.9684 2.5195 20 8 2.9688 -4.4533 1.4714 21 6 2.8717 -4.6588 3.7988 22 6 1.9308 -4.6664 4.8338 23 6 2.2341 -5.3229 6.0100 24 7 3.3909 -5.9361 6.1653 25 6 4.3056 -5.9546 5.2172 26 6 4.0859 -5.3224 4.0063 27 17 5.2950 -5.3582 2.7610 28 6 1.5312 -2.1615 1.2521 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 2.2490 -1.6319 -1.1524 33 1 3.2478 -2.3967 -4.2418 34 1 0.4403 -0.0203 2.5110 35 1 1.8740 1.0342 2.4873 36 1 1.7221 -0.1734 4.6386 37 1 3.1562 -0.7032 3.7266 38 1 0.4692 -2.1442 3.8950 39 1 2.0107 -2.6770 4.6140 40 1 0.9812 -4.1658 4.7147 41 1 1.5138 -5.3336 6.8147 42 1 5.2395 -6.4697 5.3877 43 1 1.9742 -2.7057 0.4179 44 1 0.4453 -2.1628 1.1563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:00 Heat of formation + Delta-G solvation = 17.620964 kcal Electronic energy + Delta-G solvation = -27423.186305 eV Core-core repulsion = 23595.061265 eV Total energy + Delta-G solvation = -3828.125040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.14168 -39.69938 -37.88579 -36.75498 -35.57536 -33.48420 -32.54952 -31.92297 -31.47251 -29.77233 -27.93077 -26.28812 -24.72211 -24.18411 -23.74133 -23.12889 -21.33551 -20.16408 -18.72300 -17.94008 -17.12146 -17.08222 -16.77144 -16.02808 -15.43619 -15.18058 -14.81753 -14.74525 -14.37764 -14.30874 -14.05820 -13.75712 -13.65153 -13.13108 -12.99321 -12.77539 -12.51301 -12.40933 -12.19477 -11.93534 -11.58927 -11.33488 -11.23202 -11.01137 -10.86115 -10.64464 -10.48518 -10.43403 -10.25602 -10.23630 -10.05622 -9.86580 -9.61083 -9.50246 -9.29884 -8.88469 -8.53696 -6.92197 -5.70575 -3.00543 0.32617 0.49020 1.81323 2.61327 2.84292 3.29912 3.45978 3.50973 3.53776 3.96043 4.05517 4.25773 4.38342 4.59151 4.66928 4.71807 4.84244 4.93358 5.09203 5.15968 5.21200 5.27413 5.38252 5.40856 5.59545 5.61426 5.73535 5.78916 5.82217 5.92659 5.97122 6.04410 6.09294 6.22899 6.33407 6.35592 6.53400 6.61139 6.73262 6.88083 7.11493 7.33500 7.35439 7.74460 8.08545 8.46801 9.57842 10.15543 10.49397 11.51447 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.003321 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.006363 B = 8429.435597 C = 9825.113260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 H 0.049 0.951 4 N -0.726 5.726 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.104 4.104 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.094 3.906 18 N -0.600 5.600 19 C 0.548 3.452 20 O -0.496 6.496 21 C -0.070 4.070 22 C -0.136 4.136 23 C 0.095 3.905 24 N -0.459 5.459 25 C 0.111 3.889 26 C -0.050 4.050 27 Cl -0.019 7.019 28 C 0.117 3.883 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.104 0.896 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -3.794 23.881 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.368 5.368 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.124 4.124 14 H 0.092 0.908 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.029 4.029 18 N -0.333 5.333 19 C 0.334 3.666 20 O -0.369 6.369 21 C -0.082 4.082 22 C -0.156 4.156 23 C -0.061 4.061 24 N -0.168 5.168 25 C -0.048 4.048 26 C -0.080 4.080 27 Cl 0.010 6.990 28 C -0.004 4.004 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.188 0.812 43 H 0.122 0.878 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.339 -4.360 23.796 24.305 hybrid contribution 0.044 0.647 -1.806 1.919 sum -2.295 -3.714 21.989 22.418 Atomic orbital electron populations 1.22576 0.99525 1.00818 1.00006 1.20163 0.91818 0.95307 0.85706 0.93279 1.42526 1.78135 1.10826 1.05308 1.19249 1.36695 0.93840 0.87329 0.91213 1.24752 1.02189 0.95945 0.98012 1.69681 1.50638 1.08572 1.28731 0.86167 0.77289 0.78750 0.84268 1.20630 1.21936 1.21937 1.21703 1.01103 0.94147 0.95452 0.90812 1.21631 1.00905 0.99303 0.93428 1.21930 1.01512 0.94833 0.98997 1.22168 1.00326 0.94162 0.86247 1.48042 1.55763 1.21309 1.08209 1.18037 0.79068 0.81593 0.87952 1.90927 1.49299 1.64932 1.31762 1.20420 0.93868 0.98272 0.95675 1.22567 1.00435 0.99607 0.93017 1.22860 0.93956 0.92659 0.96624 1.67685 1.01941 1.16192 1.30967 1.22846 0.99069 0.95919 0.86931 1.22289 0.92220 1.00295 0.93201 1.98459 1.52668 1.96773 1.51051 1.21812 1.00009 0.93500 0.85078 0.93345 0.94238 0.92853 0.78030 0.93543 0.91317 0.91521 0.90804 0.91553 0.90909 0.89554 0.82886 0.81395 0.81181 0.87821 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.79 37.15 0.33 -2.54 16 2 C 0.18 3.45 2.72 -67.93 -0.18 3.26 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.12 5.04 -53.43 -0.27 -18.39 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 9 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 C -0.10 -1.64 2.32 -90.72 -0.21 -1.86 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.11 -1.32 4.78 -26.69 -0.13 -1.45 16 16 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 17 C 0.09 0.86 4.88 -3.71 -0.02 0.84 16 18 N -0.60 -8.09 2.98 -174.05 -0.52 -8.61 16 19 C 0.55 8.41 7.14 -12.22 -0.09 8.32 16 20 O -0.50 -9.83 14.74 5.34 0.08 -9.75 16 21 C -0.07 -0.85 5.24 -104.62 -0.55 -1.39 16 22 C -0.14 -1.13 7.48 -39.03 -0.29 -1.42 16 23 C 0.10 0.71 11.17 -17.60 -0.20 0.52 16 24 N -0.46 -4.35 10.33 -13.27 -0.14 -4.49 16 25 C 0.11 1.08 10.99 -17.54 -0.19 0.88 16 26 C -0.05 -0.60 6.36 -38.91 -0.25 -0.84 16 27 Cl -0.02 -0.26 26.95 -51.86 -1.40 -1.66 16 28 C 0.12 1.89 5.21 -3.93 -0.02 1.87 16 29 H 0.05 0.82 6.32 -51.93 -0.33 0.50 16 30 H 0.04 0.54 6.46 -51.93 -0.34 0.20 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.38 10.39 6.17 -40.82 -0.25 10.14 16 33 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.07 0.74 6.50 -51.93 -0.34 0.40 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 39 H 0.09 0.67 4.55 -51.93 -0.24 0.43 16 40 H 0.15 0.92 6.37 -52.48 -0.33 0.59 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.17 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.10 2.13 5.58 -51.92 -0.29 1.84 16 44 H 0.07 1.12 6.16 -51.93 -0.32 0.80 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -34.06 359.83 -9.11 -43.17 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.78 Total: 7.21 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.21 Total: -2.56 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.20 Total: -59.54 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.40 Total: -1.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.06 -9.11 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.787 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds