Wall clock time and date at job start Tue Mar 31 2020 21:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47441 * 2 1 4 4 N 1.46502 * 109.47383 * 239.99322 * 2 1 3 5 5 C 1.36938 * 119.99684 * 85.00361 * 4 2 1 6 6 H 1.08000 * 120.00000 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99562 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99864 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47210 * 119.99474 * 9 7 5 12 12 H 1.48500 * 109.47137 * 239.99932 * 9 7 5 13 13 C 1.53001 * 109.47001 * 119.99521 * 2 1 3 14 14 H 1.08995 * 109.50201 * 179.97438 * 13 2 1 15 15 C 1.53039 * 109.49697 * 300.00120 * 13 2 1 16 16 C 1.53041 * 109.54208 * 181.31737 * 15 13 2 17 17 C 1.53193 * 109.30862 * 298.63544 * 16 15 13 18 18 N 1.46926 * 108.77918 * 54.63408 * 17 16 15 19 19 C 1.34775 * 120.63606 * 126.36611 * 18 17 16 20 20 O 1.21525 * 120.00436 * 185.36335 * 19 18 17 21 21 C 1.48077 * 119.99691 * 5.36730 * 19 18 17 22 22 C 1.39869 * 120.93423 * 37.61254 * 21 19 18 23 23 C 1.38081 * 119.02141 * 179.97438 * 22 21 19 24 24 N 1.31844 * 120.93972 * 0.02596 * 23 22 21 25 25 C 1.31757 * 122.07231 * 359.95313 * 24 23 22 26 26 C 1.38357 * 120.86966 * 0.04258 * 25 24 23 27 27 Cl 1.73606 * 120.51571 * 180.25584 * 26 25 24 28 28 C 1.46929 * 118.73420 * 306.64428 * 18 17 16 29 29 H 1.09002 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47697 * 300.00600 * 1 2 3 31 31 H 1.09000 * 109.47238 * 60.00746 * 1 2 3 32 32 H 0.96996 * 119.99730 * 265.00477 * 4 2 1 33 33 H 0.96994 * 120.00433 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46281 * 61.29550 * 15 13 2 35 35 H 1.09005 * 109.45370 * 301.32959 * 15 13 2 36 36 H 1.08996 * 109.50300 * 178.68438 * 16 15 13 37 37 H 1.08994 * 109.52510 * 58.59764 * 16 15 13 38 38 H 1.09001 * 109.59090 * 294.84508 * 17 16 15 39 39 H 1.09004 * 109.58754 * 174.41904 * 17 16 15 40 40 H 1.08005 * 120.48830 * 359.95417 * 22 21 19 41 41 H 1.08000 * 119.53098 * 179.97438 * 23 22 21 42 42 H 1.08006 * 119.56305 * 180.02562 * 25 24 23 43 43 H 1.09007 * 109.58547 * 173.14400 * 28 18 17 44 44 H 1.09002 * 109.58475 * 293.56666 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6115 -0.6623 -3.5091 8 7 2.9245 -1.9394 -3.4499 9 14 2.7893 0.2692 -5.1185 10 1 2.3745 1.6814 -4.9214 11 1 4.2061 0.2263 -5.5613 12 1 1.9282 -0.3595 -6.1521 13 6 2.0399 -0.7212 1.2493 14 1 3.1299 -0.7219 1.2496 15 6 1.5301 -0.0001 2.4992 16 6 2.0665 -0.7012 3.7493 17 6 1.5531 -2.1443 3.7804 18 7 1.9148 -2.8022 2.5174 19 6 2.5904 -3.9684 2.5195 20 8 2.9688 -4.4533 1.4714 21 6 2.8717 -4.6588 3.7988 22 6 1.9308 -4.6664 4.8338 23 6 2.2341 -5.3229 6.0100 24 7 3.3909 -5.9361 6.1653 25 6 4.3056 -5.9546 5.2172 26 6 4.0859 -5.3224 4.0063 27 17 5.2950 -5.3582 2.7610 28 6 1.5312 -2.1615 1.2521 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 2.2490 -1.6319 -1.1524 33 1 3.2478 -2.3967 -4.2418 34 1 0.4403 -0.0203 2.5110 35 1 1.8740 1.0342 2.4873 36 1 1.7221 -0.1734 4.6386 37 1 3.1562 -0.7032 3.7266 38 1 0.4692 -2.1442 3.8950 39 1 2.0107 -2.6770 4.6140 40 1 0.9812 -4.1658 4.7147 41 1 1.5138 -5.3336 6.8147 42 1 5.2395 -6.4697 5.3877 43 1 1.9742 -2.7057 0.4179 44 1 0.4453 -2.1628 1.1563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568412955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:57 Heat of formation + Delta-G solvation = -5.598050 kcal Electronic energy + Delta-G solvation = -27424.193157 eV Core-core repulsion = 23595.061265 eV Total energy + Delta-G solvation = -3829.131892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06026 -40.67181 -39.14651 -37.71153 -37.01118 -34.91403 -33.75334 -33.16596 -32.21992 -31.37278 -29.45664 -27.30189 -26.30646 -25.05284 -24.96935 -24.30404 -22.46416 -21.28022 -20.00734 -19.32824 -18.69725 -17.98036 -17.58991 -17.09646 -16.75054 -16.39226 -16.18387 -15.75323 -15.51682 -15.29747 -15.21523 -15.14242 -14.95810 -14.39907 -14.17455 -14.00473 -13.88171 -13.39090 -13.18921 -13.13138 -12.97956 -12.88196 -12.65697 -12.33811 -12.29706 -12.08090 -11.94703 -11.79739 -11.73644 -11.49662 -11.33771 -11.19396 -10.95645 -10.87865 -10.52968 -10.06974 -9.66503 -9.01240 -7.93235 -5.22584 -0.51394 -0.20684 0.92918 1.43683 1.45200 1.54009 1.55101 1.82015 2.53511 2.55025 3.14818 3.35195 3.39709 3.53386 3.65758 3.73018 3.86325 3.91241 4.00800 4.10121 4.14308 4.27348 4.38604 4.44617 4.54668 4.56318 4.62748 4.70453 4.76003 4.81091 4.86600 4.90455 5.09907 5.11996 5.14282 5.24665 5.34359 5.37019 5.43975 5.48358 5.54430 5.69974 6.26483 6.28039 6.66350 6.97185 7.33022 8.12249 8.32622 9.30267 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.003321 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.006363 B = 8429.435597 C = 9825.113260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.045 0.955 4 N -0.742 5.742 5 C -0.234 4.234 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.297 1.297 12 H -0.295 1.295 13 C -0.092 4.092 14 H 0.038 0.962 15 C -0.108 4.108 16 C -0.130 4.130 17 C 0.085 3.915 18 N -0.595 5.595 19 C 0.540 3.460 20 O -0.559 6.559 21 C -0.088 4.088 22 C -0.121 4.121 23 C 0.112 3.888 24 N -0.468 5.468 25 C 0.115 3.885 26 C -0.070 4.070 27 Cl -0.052 7.052 28 C 0.126 3.874 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.370 0.630 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.185 0.815 41 H 0.215 0.785 42 H 0.187 0.813 43 H 0.047 0.953 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 -2.210 27.951 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.063 0.937 4 N -0.383 5.383 5 C -0.366 4.366 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.225 1.225 12 H -0.222 1.222 13 C -0.112 4.112 14 H 0.057 0.943 15 C -0.146 4.146 16 C -0.168 4.168 17 C -0.035 4.035 18 N -0.327 5.327 19 C 0.328 3.672 20 O -0.437 6.437 21 C -0.100 4.100 22 C -0.141 4.141 23 C -0.045 4.045 24 N -0.177 5.177 25 C -0.042 4.042 26 C -0.100 4.100 27 Cl -0.023 7.023 28 C 0.004 3.996 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.202 0.798 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.202 0.798 41 H 0.231 0.769 42 H 0.204 0.796 43 H 0.066 0.934 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.979 -2.704 27.948 28.517 hybrid contribution 0.781 0.197 -2.902 3.012 sum -4.198 -2.507 25.046 25.519 Atomic orbital electron populations 1.22389 0.96980 1.00993 1.01208 1.20479 0.93453 0.94766 0.84986 0.93719 1.42823 1.78522 1.10385 1.06596 1.19684 1.34397 0.94176 0.88310 0.90384 1.25599 1.03303 0.96828 1.01671 1.69875 1.52904 1.10447 1.29171 0.85092 0.76595 0.78335 0.79893 1.18582 1.22496 1.22213 1.21526 0.98938 0.94331 0.96436 0.94318 1.21622 1.02098 0.99161 0.91695 1.21940 1.00441 0.95056 0.99341 1.22620 1.02712 0.93781 0.84378 1.48126 1.54876 1.20807 1.08896 1.18648 0.78205 0.81849 0.88542 1.90895 1.51814 1.66682 1.34265 1.20299 0.95198 0.99320 0.95200 1.22894 1.00389 0.99037 0.91801 1.23617 0.93603 0.90183 0.97071 1.67813 1.02682 1.16643 1.30545 1.23063 0.99935 0.95235 0.85966 1.22457 0.92024 1.02157 0.93372 1.98442 1.54074 1.97054 1.52747 1.21473 1.00088 0.93023 0.85064 0.93660 0.89695 0.94884 0.79782 0.94356 0.89093 0.90829 0.86628 0.93435 0.87301 0.87504 0.79810 0.76887 0.79589 0.93395 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 8.79 71.98 0.63 -4.42 16 2 C 0.17 6.59 2.72 44.99 0.12 6.71 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.74 -38.78 5.04 -322.94 -1.63 -40.41 16 5 C -0.23 -13.38 9.93 84.03 0.83 -12.54 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 8 N -0.97 -63.55 13.06 21.65 0.28 -63.26 16 9 Si 0.97 48.12 29.55 68.60 2.03 50.15 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 12 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 13 C -0.09 -2.93 2.32 -10.86 -0.03 -2.96 16 14 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 15 C -0.11 -2.14 4.78 30.62 0.15 -1.99 16 16 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 17 C 0.09 1.22 4.88 86.36 0.42 1.64 16 18 N -0.60 -15.70 2.98 -822.86 -2.45 -18.15 16 19 C 0.54 17.11 7.14 86.86 0.62 17.73 16 20 O -0.56 -24.18 14.74 -3.79 -0.06 -24.23 16 21 C -0.09 -2.05 5.24 -19.86 -0.10 -2.15 16 22 C -0.12 -1.55 7.48 22.63 0.17 -1.38 16 23 C 0.11 1.14 11.17 84.65 0.95 2.08 16 24 N -0.47 -7.37 10.33 -195.91 -2.02 -9.40 16 25 C 0.12 2.09 10.99 84.73 0.93 3.02 16 26 C -0.07 -1.68 6.36 22.71 0.14 -1.54 16 27 Cl -0.05 -1.56 26.95 -2.72 -0.07 -1.63 16 28 C 0.13 4.17 5.21 86.22 0.45 4.62 16 29 H 0.04 1.49 6.32 -2.39 -0.02 1.47 16 30 H 0.08 1.97 6.46 -2.39 -0.02 1.96 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.37 21.47 6.17 -92.71 -0.57 20.90 16 33 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.09 1.45 6.50 -2.39 -0.02 1.43 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.89 8.11 -2.39 -0.02 0.87 16 39 H 0.11 1.14 4.55 -2.39 -0.01 1.13 16 40 H 0.18 1.17 6.37 -2.91 -0.02 1.16 16 41 H 0.21 0.25 8.06 -2.91 -0.02 0.23 16 42 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.05 2.15 5.58 -2.38 -0.01 2.14 16 44 H 0.09 2.61 6.16 -2.39 -0.01 2.60 16 Total: -1.00 -82.99 359.83 2.49 -80.51 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.47 Total: 23.83 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 5.94 Total: 2.61 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -5.82 Total: -131.22 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -82.99 2.49 -80.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.908 kcal (2) G-P(sol) polarization free energy of solvation -82.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds