Wall clock time and date at job start Tue Mar 31 2020 20:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47156 * 179.97438 * 7 5 4 9 9 O 1.21290 * 119.99702 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00330 * 179.97438 * 8 7 5 11 11 C 1.46506 * 119.99820 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46674 * 179.97438 * 11 10 8 13 13 F 1.39906 * 109.47020 * 59.99943 * 12 11 10 14 14 F 1.39895 * 109.47084 * 179.97438 * 12 11 10 15 15 F 1.39896 * 109.47487 * 299.99851 * 12 11 10 16 16 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 17 17 C 1.53486 * 114.20850 * 60.00280 * 16 2 1 18 18 N 1.47064 * 87.98715 * 87.51930 * 17 16 2 19 19 C 1.36943 * 136.05552 * 207.08901 * 18 17 16 20 20 H 1.07995 * 119.99927 * 7.55397 * 19 18 17 21 21 C 1.38813 * 119.99686 * 187.55568 * 19 18 17 22 22 N 1.31616 * 120.00311 * 174.37868 * 21 19 18 23 23 Si 1.86810 * 119.99981 * 354.38142 * 21 19 18 24 24 H 1.48499 * 109.46858 * 174.94995 * 23 21 19 25 25 H 1.48498 * 109.46907 * 294.94478 * 23 21 19 26 26 H 1.48495 * 109.47036 * 54.94533 * 23 21 19 27 27 C 1.47066 * 87.88390 * 27.34185 * 18 17 16 28 28 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 29 29 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 32 32 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 33 33 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 34 34 H 0.97000 * 119.99814 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46900 * 299.99516 * 11 10 8 36 36 H 1.08998 * 109.47364 * 59.99802 * 11 10 8 37 37 H 1.08998 * 113.41116 * 286.79710 * 16 2 1 38 38 H 1.09003 * 113.46770 * 332.73878 * 17 16 2 39 39 H 1.09004 * 113.52153 * 202.31032 * 17 16 2 40 40 H 0.96998 * 119.99357 * 354.81763 * 22 21 19 41 41 H 1.08996 * 113.46631 * 87.44126 * 27 18 17 42 42 H 1.09001 * 113.46561 * 217.88042 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 6 2.7011 0.2397 4.7409 9 8 2.3630 1.3934 4.5797 10 7 3.1226 -0.1760 5.9517 11 6 3.1729 0.7657 7.0729 12 6 3.6821 0.0442 8.3223 13 9 4.9641 -0.4607 8.0793 14 9 3.7307 0.9434 9.3928 15 9 2.8178 -1.0099 8.6370 16 6 2.0399 -0.7213 -1.2493 17 6 1.5898 -0.0846 -2.5714 18 7 2.7723 0.7864 -2.4946 19 6 3.1104 2.0324 -2.9512 20 1 2.3637 2.6574 -3.4180 21 6 4.4131 2.4918 -2.8140 22 7 4.7655 3.6412 -3.3498 23 14 5.6662 1.4788 -1.8688 24 1 7.0008 2.1220 -1.9706 25 1 5.2629 1.3987 -0.4418 26 1 5.7308 0.1107 -2.4425 27 6 3.4340 -0.2723 -1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6318 1.1526 32 1 1.9776 -1.5509 3.8325 33 1 3.6492 -1.1205 3.3978 34 1 3.3927 -1.0987 6.0807 35 1 3.8460 1.5871 6.8275 36 1 2.1740 1.1587 7.2624 37 1 1.9117 -1.8029 -1.2076 38 1 0.6466 0.4562 -2.4938 39 1 1.6122 -0.7736 -3.4158 40 1 4.1374 4.1309 -3.9035 41 1 3.9431 -1.0113 -2.3358 42 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570858428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:50 Heat of formation + Delta-G solvation = -159.048693 kcal Electronic energy + Delta-G solvation = -29366.734927 eV Core-core repulsion = 24548.383010 eV Total energy + Delta-G solvation = -4818.351916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -50.68295 -48.19019 -48.16295 -40.52333 -39.44320 -38.27787 -35.43232 -34.65614 -32.44105 -31.83007 -30.30583 -28.79523 -27.79094 -25.40512 -24.10213 -23.62502 -21.92067 -21.15581 -20.30644 -19.15552 -19.14696 -18.93536 -18.45564 -17.46428 -17.35346 -16.55217 -16.25871 -15.93065 -15.79805 -15.20533 -15.09943 -14.96728 -14.69587 -14.58387 -14.35078 -14.30236 -14.28499 -13.85468 -13.69184 -13.53228 -13.32101 -13.18318 -13.06684 -12.45567 -12.43935 -12.03793 -11.88052 -11.45403 -11.24793 -10.95777 -10.58218 -10.37930 -10.26735 -10.17684 -9.74391 -9.43526 -9.17887 -9.08802 -8.88513 -8.79407 -7.12180 -6.24102 -3.18048 1.94999 2.30191 2.36535 2.80069 3.13761 3.28709 3.41431 3.45693 3.47707 3.67058 3.70108 4.20816 4.62432 4.64046 4.65869 4.77959 4.82373 4.90986 4.91719 5.06208 5.11151 5.49277 5.62470 5.64749 5.71817 5.85818 5.95314 6.08011 6.21093 6.28810 6.31459 6.46503 6.52662 6.68567 6.84664 6.93039 7.16234 7.64380 7.83160 8.29174 8.43038 9.02806 9.55228 10.40984 11.25967 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.002503 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.442002 B =11185.953221 C =12087.264503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.102 0.898 4 N -0.725 5.725 5 C 0.508 3.492 6 O -0.491 6.491 7 C -0.163 4.163 8 C 0.519 3.481 9 O -0.476 6.476 10 N -0.739 5.739 11 C 0.080 3.920 12 C 0.449 3.551 13 F -0.178 7.178 14 F -0.173 7.173 15 F -0.179 7.179 16 C -0.141 4.141 17 C 0.130 3.870 18 N -0.627 5.627 19 C -0.302 4.302 20 H 0.083 0.917 21 C -0.025 4.025 22 N -0.935 5.935 23 Si 1.070 2.930 24 H -0.296 1.296 25 H -0.293 1.293 26 H -0.288 1.288 27 C 0.100 3.900 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.395 0.605 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.406 0.594 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.261 0.739 41 H 0.045 0.955 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 -17.056 22.861 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.064 3.936 3 H 0.120 0.880 4 N -0.378 5.378 5 C 0.291 3.709 6 O -0.363 6.363 7 C -0.206 4.206 8 C 0.304 3.696 9 O -0.345 6.345 10 N -0.397 5.397 11 C -0.046 4.046 12 C 0.394 3.606 13 F -0.159 7.159 14 F -0.155 7.155 15 F -0.161 7.161 16 C -0.161 4.161 17 C 0.003 3.997 18 N -0.356 5.356 19 C -0.428 4.428 20 H 0.100 0.900 21 C -0.223 4.223 22 N -0.578 5.578 23 Si 0.903 3.097 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.216 1.216 27 C -0.026 4.026 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.228 0.772 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.241 0.759 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.714 -15.010 23.238 27.912 hybrid contribution -1.118 -1.263 -0.366 1.726 sum -4.832 -16.273 22.872 28.483 Atomic orbital electron populations 1.22104 0.95480 1.01323 1.02552 1.20622 0.93344 0.98189 0.81476 0.87968 1.46037 1.68273 1.13682 1.09762 1.19793 0.79408 0.87656 0.84030 1.90899 1.46843 1.14755 1.83792 1.21570 1.05968 0.99703 0.93329 1.20088 0.77565 0.89391 0.82594 1.90940 1.43578 1.17980 1.82049 1.45704 1.71013 1.13746 1.09213 1.22416 1.05980 0.93384 0.82817 1.20565 0.75885 0.77897 0.86215 1.93237 1.40359 1.88106 1.94244 1.93234 1.96235 1.67437 1.58547 1.93225 1.69734 1.59136 1.93965 1.23200 0.99407 0.98179 0.95266 1.22363 0.92742 0.91903 0.92729 1.46026 1.13235 1.12632 1.63690 1.20141 0.96384 0.88613 1.37672 0.89961 1.25678 0.96108 0.99170 1.01386 1.70905 1.37616 1.15091 1.34139 0.83727 0.75929 0.74468 0.75611 1.22320 1.22114 1.21551 1.22816 0.94077 0.91241 0.94446 0.92504 0.91231 0.92985 0.77196 0.85845 0.85714 0.75912 0.86626 0.86721 0.90489 0.93247 0.94284 0.92949 0.93772 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.29 37.16 0.35 -1.85 16 2 C 0.17 2.69 2.43 -67.93 -0.16 2.53 16 3 H 0.10 2.22 7.36 -51.93 -0.38 1.84 16 4 N -0.72 -9.06 5.08 -53.80 -0.27 -9.33 16 5 C 0.51 7.17 7.79 -10.99 -0.09 7.08 16 6 O -0.49 -9.92 13.84 -18.96 -0.26 -10.18 16 7 C -0.16 -1.32 6.18 -29.04 -0.18 -1.50 16 8 C 0.52 5.60 7.82 -10.99 -0.09 5.51 16 9 O -0.48 -7.91 14.18 -18.97 -0.27 -8.18 16 10 N -0.74 -5.05 5.42 -60.29 -0.33 -5.38 16 11 C 0.08 0.52 5.64 -4.04 -0.02 0.50 16 12 C 0.45 2.78 3.11 37.16 0.12 2.90 16 13 F -0.18 -1.23 17.18 2.25 0.04 -1.20 16 14 F -0.17 -1.24 17.32 2.25 0.04 -1.20 16 15 F -0.18 -1.17 17.18 2.25 0.04 -1.13 16 16 C -0.14 -2.23 3.73 -89.97 -0.34 -2.56 16 17 C 0.13 2.44 8.08 -8.52 -0.07 2.38 16 18 N -0.63 -15.40 3.49 -184.63 -0.64 -16.04 16 19 C -0.30 -8.88 11.08 -15.06 -0.17 -9.05 16 20 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 21 C -0.02 -0.76 5.50 -17.43 -0.10 -0.85 16 22 N -0.94 -30.41 13.70 55.49 0.76 -29.65 16 23 Si 1.07 27.63 25.16 -169.99 -4.28 23.35 16 24 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.29 -7.34 6.51 56.52 0.37 -6.97 16 26 H -0.29 -6.80 6.20 56.52 0.35 -6.45 16 27 C 0.10 2.05 5.24 -8.38 -0.04 2.00 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.01 6.50 -51.93 -0.34 0.67 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.39 3.28 8.60 -40.82 -0.35 2.93 16 32 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.41 1.59 8.36 -40.82 -0.34 1.25 16 35 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.91 6.43 -51.93 -0.33 0.57 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.26 8.35 8.73 -40.82 -0.36 8.00 16 41 H 0.04 0.88 7.66 -51.93 -0.40 0.48 16 42 H 0.05 1.15 4.71 -51.93 -0.24 0.91 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -40.12 359.79 -5.97 -46.09 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.43 Total: 0.34 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.79 Total: 7.08 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.48 Total: -60.40 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.53 Total: -18.35 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.12 Total: -3.53 kcal Atomic # 14 Polarization: 27.63 SS G_CDS: -4.28 Total: 23.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.12 -5.97 -46.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570858428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.956 kcal (2) G-P(sol) polarization free energy of solvation -40.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds