Wall clock time and date at job start Tue Mar 31 2020 20:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47156 * 179.97438 * 7 5 4 9 9 O 1.21290 * 119.99702 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00330 * 179.97438 * 8 7 5 11 11 C 1.46506 * 119.99820 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46674 * 179.97438 * 11 10 8 13 13 F 1.39906 * 109.47020 * 59.99943 * 12 11 10 14 14 F 1.39895 * 109.47084 * 179.97438 * 12 11 10 15 15 F 1.39896 * 109.47487 * 299.99851 * 12 11 10 16 16 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 17 17 C 1.53486 * 114.20850 * 60.00280 * 16 2 1 18 18 N 1.47064 * 87.98715 * 87.51930 * 17 16 2 19 19 C 1.36943 * 136.05552 * 207.08901 * 18 17 16 20 20 H 1.07995 * 119.99927 * 7.55397 * 19 18 17 21 21 C 1.38813 * 119.99686 * 187.55568 * 19 18 17 22 22 N 1.31616 * 120.00311 * 174.37868 * 21 19 18 23 23 Si 1.86810 * 119.99981 * 354.38142 * 21 19 18 24 24 H 1.48499 * 109.46858 * 174.94995 * 23 21 19 25 25 H 1.48498 * 109.46907 * 294.94478 * 23 21 19 26 26 H 1.48495 * 109.47036 * 54.94533 * 23 21 19 27 27 C 1.47066 * 87.88390 * 27.34185 * 18 17 16 28 28 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 29 29 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 32 32 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 33 33 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 34 34 H 0.97000 * 119.99814 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46900 * 299.99516 * 11 10 8 36 36 H 1.08998 * 109.47364 * 59.99802 * 11 10 8 37 37 H 1.08998 * 113.41116 * 286.79710 * 16 2 1 38 38 H 1.09003 * 113.46770 * 332.73878 * 17 16 2 39 39 H 1.09004 * 113.52153 * 202.31032 * 17 16 2 40 40 H 0.96998 * 119.99357 * 354.81763 * 22 21 19 41 41 H 1.08996 * 113.46631 * 87.44126 * 27 18 17 42 42 H 1.09001 * 113.46561 * 217.88042 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 6 2.7011 0.2397 4.7409 9 8 2.3630 1.3934 4.5797 10 7 3.1226 -0.1760 5.9517 11 6 3.1729 0.7657 7.0729 12 6 3.6821 0.0442 8.3223 13 9 4.9641 -0.4607 8.0793 14 9 3.7307 0.9434 9.3928 15 9 2.8178 -1.0099 8.6370 16 6 2.0399 -0.7213 -1.2493 17 6 1.5898 -0.0846 -2.5714 18 7 2.7723 0.7864 -2.4946 19 6 3.1104 2.0324 -2.9512 20 1 2.3637 2.6574 -3.4180 21 6 4.4131 2.4918 -2.8140 22 7 4.7655 3.6412 -3.3498 23 14 5.6662 1.4788 -1.8688 24 1 7.0008 2.1220 -1.9706 25 1 5.2629 1.3987 -0.4418 26 1 5.7308 0.1107 -2.4425 27 6 3.4340 -0.2723 -1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6318 1.1526 32 1 1.9776 -1.5509 3.8325 33 1 3.6492 -1.1205 3.3978 34 1 3.3927 -1.0987 6.0807 35 1 3.8460 1.5871 6.8275 36 1 2.1740 1.1587 7.2624 37 1 1.9117 -1.8029 -1.2076 38 1 0.6466 0.4562 -2.4938 39 1 1.6122 -0.7736 -3.4158 40 1 4.1374 4.1309 -3.9035 41 1 3.9431 -1.0113 -2.3358 42 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570858428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:47 Heat of formation + Delta-G solvation = -192.114293 kcal Electronic energy + Delta-G solvation = -29368.168759 eV Core-core repulsion = 24548.383010 eV Total energy + Delta-G solvation = -4819.785748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -51.21721 -48.73475 -48.68844 -41.51251 -40.69260 -39.51921 -36.29680 -35.89789 -34.51778 -32.85875 -31.34656 -29.75564 -29.36528 -26.96984 -25.36664 -24.49974 -23.36972 -22.19747 -21.35353 -20.61969 -19.68076 -19.51799 -19.49354 -19.10877 -18.28716 -17.67200 -17.16360 -16.99769 -16.72716 -16.53202 -15.96906 -15.82943 -15.64167 -15.43590 -15.41587 -15.15926 -15.12019 -14.85536 -14.83637 -14.62442 -14.52657 -14.40324 -14.23350 -13.63958 -13.37285 -13.13362 -12.98994 -12.84956 -12.79529 -12.67301 -12.19641 -12.02871 -11.65830 -11.32431 -11.23807 -11.04832 -10.86054 -10.52899 -10.43116 -9.99436 -9.18785 -8.62002 -5.45842 1.31329 1.34819 1.45311 1.54760 1.63352 1.75124 1.78976 2.36281 2.53224 2.62184 2.93973 3.05355 3.15083 3.21661 3.43426 3.53980 3.83608 3.98861 4.09170 4.30556 4.37438 4.39619 4.45702 4.47927 4.59050 4.65111 4.70764 4.77431 4.80486 4.88717 5.03427 5.16157 5.22738 5.30416 5.44889 5.68444 5.96151 6.28816 6.71012 6.72358 7.13512 7.34373 7.49300 8.29701 8.90074 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.002503 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.442002 B =11185.953221 C =12087.264503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.169 3.831 3 H 0.034 0.966 4 N -0.707 5.707 5 C 0.497 3.503 6 O -0.564 6.564 7 C -0.148 4.148 8 C 0.515 3.485 9 O -0.546 6.546 10 N -0.719 5.719 11 C 0.078 3.922 12 C 0.461 3.539 13 F -0.180 7.180 14 F -0.179 7.179 15 F -0.177 7.177 16 C -0.103 4.103 17 C 0.123 3.877 18 N -0.667 5.667 19 C -0.283 4.283 20 H 0.045 0.955 21 C -0.094 4.094 22 N -0.977 5.977 23 Si 1.114 2.886 24 H -0.308 1.308 25 H -0.288 1.288 26 H -0.245 1.245 27 C 0.089 3.911 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.422 0.578 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.423 0.577 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.244 0.756 41 H 0.068 0.932 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 -22.666 24.472 33.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.063 3.937 3 H 0.052 0.948 4 N -0.362 5.362 5 C 0.283 3.717 6 O -0.440 6.440 7 C -0.189 4.189 8 C 0.301 3.699 9 O -0.420 6.420 10 N -0.377 5.377 11 C -0.048 4.048 12 C 0.407 3.593 13 F -0.161 7.161 14 F -0.160 7.160 15 F -0.159 7.159 16 C -0.122 4.122 17 C -0.003 4.003 18 N -0.396 5.396 19 C -0.411 4.411 20 H 0.063 0.937 21 C -0.285 4.285 22 N -0.623 5.623 23 Si 0.940 3.060 24 H -0.236 1.236 25 H -0.216 1.216 26 H -0.170 1.170 27 C -0.035 4.035 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.260 0.740 32 H 0.195 0.805 33 H 0.183 0.817 34 H 0.262 0.738 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.766 -20.789 24.875 32.636 hybrid contribution -1.257 0.467 -0.839 1.582 sum -5.023 -20.323 24.036 31.874 Atomic orbital electron populations 1.22001 0.93861 1.03491 1.01121 1.20303 0.94571 0.95352 0.83429 0.94775 1.45789 1.67439 1.14723 1.08220 1.20862 0.78056 0.87093 0.85711 1.90893 1.49888 1.18228 1.85022 1.21641 1.09104 0.99243 0.88962 1.20641 0.76434 0.88910 0.83920 1.90935 1.46922 1.20954 1.83234 1.45487 1.69424 1.14590 1.08190 1.22422 1.06093 0.93420 0.82903 1.20343 0.75669 0.77621 0.85715 1.93237 1.40545 1.88101 1.94228 1.93226 1.96251 1.67726 1.58796 1.93230 1.69689 1.59029 1.93945 1.22999 0.94993 1.01276 0.92948 1.22686 0.90738 0.91341 0.95487 1.46161 1.16542 1.12433 1.64493 1.19986 0.95278 0.90916 1.34958 0.93739 1.27101 0.98822 0.99771 1.02780 1.71008 1.37778 1.16910 1.36606 0.83223 0.72853 0.75127 0.74798 1.23594 1.21581 1.16959 1.23116 0.96464 0.90126 0.93815 0.94325 0.92459 0.88778 0.73999 0.80523 0.81679 0.73780 0.87098 0.86569 0.84009 0.93546 0.91596 0.94699 0.91452 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.29 71.98 0.67 -3.14 16 2 C 0.17 5.09 2.43 44.99 0.11 5.20 16 3 H 0.03 1.52 7.36 -2.39 -0.02 1.51 16 4 N -0.71 -15.07 5.08 -442.52 -2.25 -17.31 16 5 C 0.50 13.06 7.79 87.65 0.68 13.74 16 6 O -0.56 -23.52 13.84 20.40 0.28 -23.24 16 7 C -0.15 -1.78 6.18 29.10 0.18 -1.60 16 8 C 0.51 10.18 7.82 87.66 0.69 10.87 16 9 O -0.55 -18.61 14.18 20.38 0.29 -18.32 16 10 N -0.72 -8.06 5.42 -463.04 -2.51 -10.56 16 11 C 0.08 0.93 5.64 86.38 0.49 1.42 16 12 C 0.46 4.93 3.11 71.98 0.22 5.15 16 13 F -0.18 -2.11 17.18 44.97 0.77 -1.34 16 14 F -0.18 -2.37 17.32 44.97 0.78 -1.59 16 15 F -0.18 -1.90 17.18 44.97 0.77 -1.13 16 16 C -0.10 -2.80 3.73 -10.37 -0.04 -2.84 16 17 C 0.12 4.30 8.08 83.17 0.67 4.97 16 18 N -0.67 -32.33 3.49 -738.03 -2.58 -34.91 16 19 C -0.28 -17.30 11.08 84.03 0.93 -16.37 16 20 H 0.04 2.95 8.06 -2.91 -0.02 2.93 16 21 C -0.09 -5.95 5.50 84.86 0.47 -5.48 16 22 N -0.98 -66.83 13.70 21.65 0.30 -66.54 16 23 Si 1.11 56.35 25.16 68.60 1.73 58.08 16 24 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 25 H -0.29 -14.13 6.51 99.48 0.65 -13.48 16 26 H -0.25 -10.54 6.20 99.48 0.62 -9.92 16 27 C 0.09 3.35 5.24 83.26 0.44 3.78 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.61 6.50 -2.39 -0.02 1.60 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.42 4.33 8.60 -92.71 -0.80 3.53 16 32 H 0.18 0.26 8.14 -2.39 -0.02 0.25 16 33 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.42 1.67 8.36 -92.71 -0.78 0.89 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.65 6.43 -2.39 -0.02 1.63 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.24 16.77 8.73 -92.71 -0.81 15.96 16 41 H 0.07 2.29 7.66 -2.39 -0.02 2.27 16 42 H 0.04 1.53 4.71 -2.39 -0.01 1.52 16 Total: -1.00 -99.62 359.79 2.42 -97.20 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -0.67 Total: 3.96 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.50 Total: 15.71 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -7.04 Total: -129.32 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: 0.57 Total: -41.56 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 2.32 Total: -4.06 kcal Atomic # 14 Polarization: 56.35 SS G_CDS: 1.73 Total: 58.08 kcal Total: -99.62 2.42 -97.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570858428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.918 kcal (2) G-P(sol) polarization free energy of solvation -99.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds