Wall clock time and date at job start Tue Mar 31 2020 20:30:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09001 * 109.87189 * 2 1
4 4 C 1.54321 * 109.88652 * 121.02063 * 2 1 3
5 5 H 1.09002 * 110.71668 * 23.06948 * 4 2 1
6 6 N 1.46895 * 110.72216 * 259.97764 * 4 2 1
7 7 C 1.46893 * 111.00318 * 157.43754 * 6 4 2
8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4
9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6
10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6
11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7
12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8
13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8
14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10
15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10
16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11
17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11
18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11
19 19 C 1.55157 * 103.10301 * 141.51878 * 4 2 1
20 20 C 1.55116 * 101.48512 * 324.71781 * 19 4 2
21 21 N 1.47026 * 109.88081 * 238.83010 * 2 1 3
22 22 C 1.34776 * 125.64920 * 61.67265 * 21 2 1
23 23 O 1.21279 * 120.00313 * 0.02562 * 22 21 2
24 24 C 1.50705 * 120.00035 * 180.02562 * 22 21 2
25 25 C 1.52995 * 109.47115 * 180.02562 * 24 22 21
26 26 F 1.39894 * 109.47356 * 59.99822 * 25 24 22
27 27 F 1.39905 * 109.47110 * 180.02562 * 25 24 22
28 28 F 1.39903 * 109.46997 * 299.99708 * 25 24 22
29 29 H 1.09003 * 109.46677 * 298.98169 * 1 2 3
30 30 H 1.09003 * 109.47101 * 58.97882 * 1 2 3
31 31 H 1.08998 * 109.47010 * 178.98084 * 1 2 3
32 32 H 1.00899 * 111.00063 * 33.47930 * 6 4 2
33 33 H 1.09002 * 109.47091 * 59.99845 * 7 6 4
34 34 H 1.09000 * 109.47343 * 299.99463 * 7 6 4
35 35 H 0.96996 * 120.00564 * 359.97438 * 10 8 7
36 36 H 0.97001 * 119.99781 * 179.97438 * 14 13 11
37 37 H 1.09000 * 111.00261 * 82.66761 * 19 4 2
38 38 H 1.09002 * 111.00076 * 206.51382 * 19 4 2
39 39 H 1.09001 * 110.21229 * 277.95737 * 20 19 4
40 40 H 1.09002 * 110.41945 * 155.70476 * 20 19 4
41 41 H 1.09000 * 109.46976 * 300.00710 * 24 22 21
42 42 H 1.09002 * 109.46780 * 59.99932 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0550 -0.7479 1.2436
5 1 1.3041 -1.4415 1.6219
6 7 2.4566 0.2016 2.2900
7 6 2.4429 -0.4362 3.6132
8 6 2.8601 0.5661 4.6584
9 8 3.1416 1.7001 4.3330
10 7 2.9213 0.2020 5.9546
11 6 3.3003 1.1141 6.9055
12 1 3.5502 2.1240 6.6159
13 6 3.3629 0.7389 8.2420
14 7 3.0584 -0.4899 8.5945
15 14 3.8800 1.9813 9.5376
16 1 3.8656 1.3367 10.8753
17 1 5.2502 2.4687 9.2371
18 1 2.9347 3.1265 9.5304
19 6 3.2871 -1.5168 0.6977
20 6 2.8145 -1.8804 -0.7343
21 7 2.0300 -0.7156 -1.1830
22 6 1.8084 -0.3645 -2.4653
23 8 1.1458 0.6190 -2.7189
24 6 2.3842 -1.1942 -3.5839
25 6 1.9875 -0.5822 -4.9289
26 9 2.4849 0.7226 -5.0124
27 9 2.5215 -1.3527 -5.9674
28 9 0.5929 -0.5575 -5.0368
29 1 -0.3633 0.4980 0.8990
30 1 -0.3633 0.5296 -0.8807
31 1 -0.3633 -1.0275 -0.0183
32 1 1.8699 1.0224 2.2782
33 1 3.1371 -1.2766 3.6186
34 1 1.4373 -0.7942 3.8336
35 1 2.6965 -0.7049 6.2149
36 1 3.1025 -0.7518 9.5275
37 1 4.1665 -0.8736 0.6662
38 1 3.4812 -2.4128 1.2874
39 1 2.1886 -2.7724 -0.7092
40 1 3.6716 -2.0357 -1.3897
41 1 3.4708 -1.2132 -3.5000
42 1 1.9969 -2.2110 -3.5186
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571452040.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:30:46
Heat of formation + Delta-G solvation = -220.074683 kcal
Electronic energy + Delta-G solvation = -29215.496871 eV
Core-core repulsion = 24394.498669 eV
Total energy + Delta-G solvation = -4820.998202 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 337.140 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-50.38061 -47.92550 -47.78872 -40.67508 -38.59900 -37.86873 -34.90397 -33.86812
-32.72564 -31.45633 -31.28139 -30.42856 -27.06137 -25.21102 -24.73859 -23.72898
-22.88043 -20.83248 -19.86815 -19.24177 -18.86415 -18.77650 -17.93074 -17.72340
-17.12492 -16.69615 -16.17186 -15.66217 -15.36114 -14.97346 -14.69573 -14.63560
-14.50872 -14.25216 -14.11988 -13.98462 -13.97030 -13.94893 -13.77351 -13.45979
-13.33548 -13.16028 -12.94848 -12.49070 -12.34806 -12.31768 -11.90446 -11.83497
-11.61581 -11.48210 -11.20445 -11.02831 -10.85482 -10.46982 -10.32144 -10.24652
-9.53911 -9.06514 -8.54472 -8.21062 -8.00672 -6.45568 -3.86510 2.06951
2.09892 2.58867 3.17739 3.23796 3.28181 3.32613 3.55907 3.65249
3.85361 3.97328 4.11137 4.22647 4.28694 4.40498 4.55502 4.59088
4.82450 4.86811 5.00332 5.09760 5.13831 5.21851 5.23684 5.31655
5.45928 5.66625 5.72792 5.81502 5.88801 5.92197 6.01758 6.05849
6.21860 7.02368 7.08535 7.48877 7.51626 7.62647 8.01791 8.56617
9.13833 9.49510 10.00701 10.71946
Molecular weight = 337.14amu
Principal moments of inertia in cm(-1)
A = 0.036013 B = 0.001864 C = 0.001848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 777.308793 B =15016.637045 C =15146.955779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.135 3.865
3 H 0.092 0.908
4 C 0.078 3.922
5 H 0.063 0.937
6 N -0.656 5.656
7 C 0.052 3.948
8 C 0.439 3.561
9 O -0.583 6.583
10 N -0.562 5.562
11 C -0.300 4.300
12 H 0.103 0.897
13 C 0.023 3.977
14 N -0.902 5.902
15 Si 0.931 3.069
16 H -0.284 1.284
17 H -0.273 1.273
18 H -0.274 1.274
19 C -0.124 4.124
20 C 0.093 3.907
21 N -0.605 5.605
22 C 0.533 3.467
23 O -0.518 6.518
24 C -0.192 4.192
25 C 0.473 3.527
26 F -0.172 7.172
27 F -0.183 7.183
28 F -0.173 7.173
29 H 0.068 0.932
30 H 0.072 0.928
31 H 0.056 0.944
32 H 0.353 0.647
33 H 0.087 0.913
34 H 0.046 0.954
35 H 0.392 0.608
36 H 0.272 0.728
37 H 0.091 0.909
38 H 0.086 0.914
39 H 0.074 0.926
40 H 0.080 0.920
41 H 0.138 0.862
42 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.376 -9.869 -22.906 25.054
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.032 3.968
3 H 0.109 0.891
4 C -0.033 4.033
5 H 0.081 0.919
6 N -0.290 5.290
7 C -0.081 4.081
8 C 0.225 3.775
9 O -0.467 6.467
10 N -0.199 5.199
11 C -0.430 4.430
12 H 0.121 0.879
13 C -0.179 4.179
14 N -0.543 5.543
15 Si 0.758 3.242
16 H -0.210 1.210
17 H -0.199 1.199
18 H -0.199 1.199
19 C -0.163 4.163
20 C -0.030 4.030
21 N -0.340 5.340
22 C 0.320 3.680
23 O -0.393 6.393
24 C -0.233 4.233
25 C 0.418 3.582
26 F -0.153 7.153
27 F -0.165 7.165
28 F -0.155 7.155
29 H 0.087 0.913
30 H 0.091 0.909
31 H 0.075 0.925
32 H 0.174 0.826
33 H 0.105 0.895
34 H 0.064 0.936
35 H 0.225 0.775
36 H 0.082 0.918
37 H 0.110 0.890
38 H 0.104 0.896
39 H 0.092 0.908
40 H 0.098 0.902
41 H 0.156 0.844
42 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -1.909 -8.707 -23.254 24.904
hybrid contribution -0.781 -0.230 0.922 1.230
sum -2.690 -8.937 -22.333 24.205
Atomic orbital electron populations
1.22182 0.94311 1.02363 1.03478 1.21729 0.94461 0.97276 0.83339
0.89052 1.22627 0.95732 0.94061 0.90903 0.91908 1.60155 1.58927
1.07640 1.02255 1.21721 1.00215 0.97406 0.88759 1.19763 0.85244
0.89164 0.83370 1.90536 1.54301 1.21064 1.80765 1.41850 1.59392
1.13720 1.04935 1.19655 1.42221 0.94885 0.86218 0.87945 1.25269
0.97435 0.96970 0.98237 1.69601 1.48669 1.17256 1.18763 0.85910
0.79369 0.79911 0.78999 1.20974 1.19851 1.19895 1.22924 0.99055
1.01061 0.93229 1.22547 0.95135 0.88390 0.96880 1.48332 1.52393
1.28771 1.04497 1.19325 0.81178 0.85260 0.82269 1.90834 1.39076
1.26651 1.82755 1.22956 1.06855 1.03177 0.90330 1.19697 0.75384
0.76808 0.86319 1.93237 1.87217 1.38197 1.96667 1.93204 1.86258
1.75325 1.61679 1.93228 1.29380 1.96291 1.96565 0.91276 0.90888
0.92470 0.82604 0.89478 0.93647 0.77459 0.91791 0.88995 0.89593
0.90808 0.90193 0.84361 0.84460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.71 9.09 37.16 0.34 -1.37 16
2 C 0.13 1.45 2.98 -66.95 -0.20 1.25 16
3 H 0.09 1.18 7.93 -51.93 -0.41 0.76 16
4 C 0.08 0.81 2.78 -65.88 -0.18 0.63 16
5 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16
6 N -0.66 -9.51 5.94 -106.06 -0.63 -10.14 16
7 C 0.05 0.83 6.04 -4.98 -0.03 0.80 16
8 C 0.44 9.92 7.82 -10.98 -0.09 9.84 16
9 O -0.58 -15.38 15.78 5.55 0.09 -15.29 16
10 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16
11 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16
12 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16
13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
14 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16
15 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16
16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
19 C -0.12 -1.04 6.78 -24.47 -0.17 -1.21 16
20 C 0.09 0.57 6.69 -2.42 -0.02 0.55 16
21 N -0.61 -5.51 3.07 -162.88 -0.50 -6.01 16
22 C 0.53 5.38 7.41 -10.98 -0.08 5.30 16
23 O -0.52 -7.34 13.89 5.56 0.08 -7.27 16
24 C -0.19 -1.17 4.76 -27.88 -0.13 -1.30 16
25 C 0.47 4.20 2.89 37.16 0.11 4.31 16
26 F -0.17 -1.94 16.40 2.25 0.04 -1.90 16
27 F -0.18 -1.48 17.32 2.25 0.04 -1.44 16
28 F -0.17 -1.89 16.40 2.25 0.04 -1.85 16
29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.07 0.88 6.91 -51.93 -0.36 0.52 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.35 5.46 8.08 -39.29 -0.32 5.14 16
33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16
34 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16
35 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16
36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16
38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
40 H 0.08 0.31 7.48 -51.93 -0.39 -0.08 16
41 H 0.14 0.48 7.84 -51.93 -0.41 0.07 16
42 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 364.66 15.07 5.50 5.50
Total: -1.00 -33.50 364.66 -5.89 -39.39
By element:
Atomic # 1 Polarization: 14.99 SS G_CDS: -5.49 Total: 9.51 kcal
Atomic # 6 Polarization: 11.63 SS G_CDS: -0.69 Total: 10.94 kcal
Atomic # 7 Polarization: -52.83 SS G_CDS: -0.46 Total: -53.29 kcal
Atomic # 8 Polarization: -22.73 SS G_CDS: 0.16 Total: -22.56 kcal
Atomic # 9 Polarization: -5.31 SS G_CDS: 0.11 Total: -5.19 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -33.50 -5.89 -39.39 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571452040.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -180.688 kcal
(2) G-P(sol) polarization free energy of solvation -33.496 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal
(6) G-S(sol) free energy of system = (1) + (5) -220.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds