Wall clock time and date at job start Tue Mar 31 2020 20:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.87189 * 2 1 4 4 C 1.54321 * 109.88652 * 121.02063 * 2 1 3 5 5 H 1.09002 * 110.71668 * 23.06948 * 4 2 1 6 6 N 1.46895 * 110.72216 * 259.97764 * 4 2 1 7 7 C 1.46893 * 111.00318 * 157.43754 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55157 * 103.10301 * 141.51878 * 4 2 1 20 20 C 1.55116 * 101.48512 * 324.71781 * 19 4 2 21 21 N 1.47026 * 109.88081 * 238.83010 * 2 1 3 22 22 C 1.34776 * 125.64920 * 61.67265 * 21 2 1 23 23 O 1.21279 * 120.00313 * 0.02562 * 22 21 2 24 24 C 1.50705 * 120.00035 * 180.02562 * 22 21 2 25 25 C 1.52995 * 109.47115 * 180.02562 * 24 22 21 26 26 F 1.39894 * 109.47356 * 59.99822 * 25 24 22 27 27 F 1.39905 * 109.47110 * 180.02562 * 25 24 22 28 28 F 1.39903 * 109.46997 * 299.99708 * 25 24 22 29 29 H 1.09003 * 109.46677 * 298.98169 * 1 2 3 30 30 H 1.09003 * 109.47101 * 58.97882 * 1 2 3 31 31 H 1.08998 * 109.47010 * 178.98084 * 1 2 3 32 32 H 1.00899 * 111.00063 * 33.47930 * 6 4 2 33 33 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 34 34 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 35 35 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 36 36 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 37 37 H 1.09000 * 111.00261 * 82.66761 * 19 4 2 38 38 H 1.09002 * 111.00076 * 206.51382 * 19 4 2 39 39 H 1.09001 * 110.21229 * 277.95737 * 20 19 4 40 40 H 1.09002 * 110.41945 * 155.70476 * 20 19 4 41 41 H 1.09000 * 109.46976 * 300.00710 * 24 22 21 42 42 H 1.09002 * 109.46780 * 59.99932 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7479 1.2436 5 1 1.3041 -1.4415 1.6219 6 7 2.4566 0.2016 2.2900 7 6 2.4429 -0.4362 3.6132 8 6 2.8601 0.5661 4.6584 9 8 3.1416 1.7001 4.3330 10 7 2.9213 0.2020 5.9546 11 6 3.3003 1.1141 6.9055 12 1 3.5502 2.1240 6.6159 13 6 3.3629 0.7389 8.2420 14 7 3.0584 -0.4899 8.5945 15 14 3.8800 1.9813 9.5376 16 1 3.8656 1.3367 10.8753 17 1 5.2502 2.4687 9.2371 18 1 2.9347 3.1265 9.5304 19 6 3.2871 -1.5168 0.6977 20 6 2.8145 -1.8804 -0.7343 21 7 2.0300 -0.7156 -1.1830 22 6 1.8084 -0.3645 -2.4653 23 8 1.1458 0.6190 -2.7189 24 6 2.3842 -1.1942 -3.5839 25 6 1.9875 -0.5822 -4.9289 26 9 2.4849 0.7226 -5.0124 27 9 2.5215 -1.3527 -5.9674 28 9 0.5929 -0.5575 -5.0368 29 1 -0.3633 0.4980 0.8990 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3633 -1.0275 -0.0183 32 1 1.8699 1.0224 2.2782 33 1 3.1371 -1.2766 3.6186 34 1 1.4373 -0.7942 3.8336 35 1 2.6965 -0.7049 6.2149 36 1 3.1025 -0.7518 9.5275 37 1 4.1665 -0.8736 0.6662 38 1 3.4812 -2.4128 1.2874 39 1 2.1886 -2.7724 -0.7092 40 1 3.6716 -2.0357 -1.3897 41 1 3.4708 -1.2132 -3.5000 42 1 1.9969 -2.2110 -3.5186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571452040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:46 Heat of formation + Delta-G solvation = -220.074683 kcal Electronic energy + Delta-G solvation = -29215.496871 eV Core-core repulsion = 24394.498669 eV Total energy + Delta-G solvation = -4820.998202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.38061 -47.92550 -47.78872 -40.67508 -38.59900 -37.86873 -34.90397 -33.86812 -32.72564 -31.45633 -31.28139 -30.42856 -27.06137 -25.21102 -24.73859 -23.72898 -22.88043 -20.83248 -19.86815 -19.24177 -18.86415 -18.77650 -17.93074 -17.72340 -17.12492 -16.69615 -16.17186 -15.66217 -15.36114 -14.97346 -14.69573 -14.63560 -14.50872 -14.25216 -14.11988 -13.98462 -13.97030 -13.94893 -13.77351 -13.45979 -13.33548 -13.16028 -12.94848 -12.49070 -12.34806 -12.31768 -11.90446 -11.83497 -11.61581 -11.48210 -11.20445 -11.02831 -10.85482 -10.46982 -10.32144 -10.24652 -9.53911 -9.06514 -8.54472 -8.21062 -8.00672 -6.45568 -3.86510 2.06951 2.09892 2.58867 3.17739 3.23796 3.28181 3.32613 3.55907 3.65249 3.85361 3.97328 4.11137 4.22647 4.28694 4.40498 4.55502 4.59088 4.82450 4.86811 5.00332 5.09760 5.13831 5.21851 5.23684 5.31655 5.45928 5.66625 5.72792 5.81502 5.88801 5.92197 6.01758 6.05849 6.21860 7.02368 7.08535 7.48877 7.51626 7.62647 8.01791 8.56617 9.13833 9.49510 10.00701 10.71946 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.036013 B = 0.001864 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.308793 B =15016.637045 C =15146.955779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.092 0.908 4 C 0.078 3.922 5 H 0.063 0.937 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.439 3.561 9 O -0.583 6.583 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.284 1.284 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.124 4.124 20 C 0.093 3.907 21 N -0.605 5.605 22 C 0.533 3.467 23 O -0.518 6.518 24 C -0.192 4.192 25 C 0.473 3.527 26 F -0.172 7.172 27 F -0.183 7.183 28 F -0.173 7.173 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.353 0.647 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -9.869 -22.906 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.109 0.891 4 C -0.033 4.033 5 H 0.081 0.919 6 N -0.290 5.290 7 C -0.081 4.081 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.030 4.030 21 N -0.340 5.340 22 C 0.320 3.680 23 O -0.393 6.393 24 C -0.233 4.233 25 C 0.418 3.582 26 F -0.153 7.153 27 F -0.165 7.165 28 F -0.155 7.155 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.156 0.844 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.909 -8.707 -23.254 24.904 hybrid contribution -0.781 -0.230 0.922 1.230 sum -2.690 -8.937 -22.333 24.205 Atomic orbital electron populations 1.22182 0.94311 1.02363 1.03478 1.21729 0.94461 0.97276 0.83339 0.89052 1.22627 0.95732 0.94061 0.90903 0.91908 1.60155 1.58927 1.07640 1.02255 1.21721 1.00215 0.97406 0.88759 1.19763 0.85244 0.89164 0.83370 1.90536 1.54301 1.21064 1.80765 1.41850 1.59392 1.13720 1.04935 1.19655 1.42221 0.94885 0.86218 0.87945 1.25269 0.97435 0.96970 0.98237 1.69601 1.48669 1.17256 1.18763 0.85910 0.79369 0.79911 0.78999 1.20974 1.19851 1.19895 1.22924 0.99055 1.01061 0.93229 1.22547 0.95135 0.88390 0.96880 1.48332 1.52393 1.28771 1.04497 1.19325 0.81178 0.85260 0.82269 1.90834 1.39076 1.26651 1.82755 1.22956 1.06855 1.03177 0.90330 1.19697 0.75384 0.76808 0.86319 1.93237 1.87217 1.38197 1.96667 1.93204 1.86258 1.75325 1.61679 1.93228 1.29380 1.96291 1.96565 0.91276 0.90888 0.92470 0.82604 0.89478 0.93647 0.77459 0.91791 0.88995 0.89593 0.90808 0.90193 0.84361 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.09 37.16 0.34 -1.37 16 2 C 0.13 1.45 2.98 -66.95 -0.20 1.25 16 3 H 0.09 1.18 7.93 -51.93 -0.41 0.76 16 4 C 0.08 0.81 2.78 -65.88 -0.18 0.63 16 5 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 6 N -0.66 -9.51 5.94 -106.06 -0.63 -10.14 16 7 C 0.05 0.83 6.04 -4.98 -0.03 0.80 16 8 C 0.44 9.92 7.82 -10.98 -0.09 9.84 16 9 O -0.58 -15.38 15.78 5.55 0.09 -15.29 16 10 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 11 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 12 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 15 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.12 -1.04 6.78 -24.47 -0.17 -1.21 16 20 C 0.09 0.57 6.69 -2.42 -0.02 0.55 16 21 N -0.61 -5.51 3.07 -162.88 -0.50 -6.01 16 22 C 0.53 5.38 7.41 -10.98 -0.08 5.30 16 23 O -0.52 -7.34 13.89 5.56 0.08 -7.27 16 24 C -0.19 -1.17 4.76 -27.88 -0.13 -1.30 16 25 C 0.47 4.20 2.89 37.16 0.11 4.31 16 26 F -0.17 -1.94 16.40 2.25 0.04 -1.90 16 27 F -0.18 -1.48 17.32 2.25 0.04 -1.44 16 28 F -0.17 -1.89 16.40 2.25 0.04 -1.85 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.88 6.91 -51.93 -0.36 0.52 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.35 5.46 8.08 -39.29 -0.32 5.14 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.31 7.48 -51.93 -0.39 -0.08 16 41 H 0.14 0.48 7.84 -51.93 -0.41 0.07 16 42 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -33.50 364.66 -5.89 -39.39 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.49 Total: 9.51 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.69 Total: 10.94 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.46 Total: -53.29 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.16 Total: -22.56 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.11 Total: -5.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.50 -5.89 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571452040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.688 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds