Wall clock time and date at job start Tue Mar 31 2020 20:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.87189 * 2 1 4 4 C 1.54321 * 109.88652 * 121.02063 * 2 1 3 5 5 H 1.09002 * 110.71668 * 23.06948 * 4 2 1 6 6 N 1.46895 * 110.72216 * 259.97764 * 4 2 1 7 7 C 1.46893 * 111.00318 * 157.43754 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55157 * 103.10301 * 141.51878 * 4 2 1 20 20 C 1.55116 * 101.48512 * 324.71781 * 19 4 2 21 21 N 1.47026 * 109.88081 * 238.83010 * 2 1 3 22 22 C 1.34776 * 125.64920 * 61.67265 * 21 2 1 23 23 O 1.21279 * 120.00313 * 0.02562 * 22 21 2 24 24 C 1.50705 * 120.00035 * 180.02562 * 22 21 2 25 25 C 1.52995 * 109.47115 * 180.02562 * 24 22 21 26 26 F 1.39894 * 109.47356 * 59.99822 * 25 24 22 27 27 F 1.39905 * 109.47110 * 180.02562 * 25 24 22 28 28 F 1.39903 * 109.46997 * 299.99708 * 25 24 22 29 29 H 1.09003 * 109.46677 * 298.98169 * 1 2 3 30 30 H 1.09003 * 109.47101 * 58.97882 * 1 2 3 31 31 H 1.08998 * 109.47010 * 178.98084 * 1 2 3 32 32 H 1.00899 * 111.00063 * 33.47930 * 6 4 2 33 33 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 34 34 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 35 35 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 36 36 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 37 37 H 1.09000 * 111.00261 * 82.66761 * 19 4 2 38 38 H 1.09002 * 111.00076 * 206.51382 * 19 4 2 39 39 H 1.09001 * 110.21229 * 277.95737 * 20 19 4 40 40 H 1.09002 * 110.41945 * 155.70476 * 20 19 4 41 41 H 1.09000 * 109.46976 * 300.00710 * 24 22 21 42 42 H 1.09002 * 109.46780 * 59.99932 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7479 1.2436 5 1 1.3041 -1.4415 1.6219 6 7 2.4566 0.2016 2.2900 7 6 2.4429 -0.4362 3.6132 8 6 2.8601 0.5661 4.6584 9 8 3.1416 1.7001 4.3330 10 7 2.9213 0.2020 5.9546 11 6 3.3003 1.1141 6.9055 12 1 3.5502 2.1240 6.6159 13 6 3.3629 0.7389 8.2420 14 7 3.0584 -0.4899 8.5945 15 14 3.8800 1.9813 9.5376 16 1 3.8656 1.3367 10.8753 17 1 5.2502 2.4687 9.2371 18 1 2.9347 3.1265 9.5304 19 6 3.2871 -1.5168 0.6977 20 6 2.8145 -1.8804 -0.7343 21 7 2.0300 -0.7156 -1.1830 22 6 1.8084 -0.3645 -2.4653 23 8 1.1458 0.6190 -2.7189 24 6 2.3842 -1.1942 -3.5839 25 6 1.9875 -0.5822 -4.9289 26 9 2.4849 0.7226 -5.0124 27 9 2.5215 -1.3527 -5.9674 28 9 0.5929 -0.5575 -5.0368 29 1 -0.3633 0.4980 0.8990 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3633 -1.0275 -0.0183 32 1 1.8699 1.0224 2.2782 33 1 3.1371 -1.2766 3.6186 34 1 1.4373 -0.7942 3.8336 35 1 2.6965 -0.7049 6.2149 36 1 3.1025 -0.7518 9.5275 37 1 4.1665 -0.8736 0.6662 38 1 3.4812 -2.4128 1.2874 39 1 2.1886 -2.7724 -0.7092 40 1 3.6716 -2.0357 -1.3897 41 1 3.4708 -1.2132 -3.5000 42 1 1.9969 -2.2110 -3.5186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571452040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:43 Heat of formation + Delta-G solvation = -245.328113 kcal Electronic energy + Delta-G solvation = -29216.591942 eV Core-core repulsion = 24394.498669 eV Total energy + Delta-G solvation = -4822.093273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -51.08365 -48.60452 -48.55759 -41.43416 -40.14631 -38.97066 -36.21649 -35.57900 -33.48693 -33.21586 -32.15232 -31.29195 -28.41400 -26.50084 -25.61468 -24.88894 -23.60515 -21.62890 -21.16994 -20.42442 -19.88742 -19.56611 -19.47206 -18.40904 -18.03817 -17.56294 -17.39272 -16.84348 -16.45966 -16.30217 -15.92381 -15.64608 -15.44822 -15.34607 -15.20277 -14.96912 -14.73413 -14.71818 -14.68705 -14.45098 -14.34766 -14.06829 -13.84843 -13.61986 -13.47211 -13.19084 -13.09876 -12.99998 -12.83123 -12.68072 -12.42893 -12.36562 -12.12363 -11.95000 -11.65772 -11.49567 -11.12254 -10.33756 -10.00573 -9.78568 -9.37246 -8.46019 -5.94323 1.39916 1.40176 1.41876 1.42983 1.52915 1.93841 2.07046 2.29851 2.71261 2.88393 2.97901 3.05265 3.21579 3.39942 3.51469 3.64763 3.73514 4.03152 4.12650 4.21815 4.24781 4.30733 4.35069 4.39001 4.51957 4.54565 4.62099 4.74461 4.78577 4.96788 5.07717 5.16758 5.24086 5.33605 5.41892 5.90197 6.11201 6.28411 6.38136 6.61416 6.91505 7.13868 7.57846 8.13607 8.70909 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.036013 B = 0.001864 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.308793 B =15016.637045 C =15146.955779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 H 0.059 0.941 4 C 0.080 3.920 5 H 0.082 0.918 6 N -0.673 5.673 7 C 0.069 3.931 8 C 0.436 3.564 9 O -0.626 6.626 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.918 5.918 15 Si 0.990 3.010 16 H -0.270 1.270 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.123 4.123 20 C 0.094 3.906 21 N -0.604 5.604 22 C 0.525 3.475 23 O -0.571 6.571 24 C -0.178 4.178 25 C 0.465 3.535 26 F -0.192 7.192 27 F -0.178 7.178 28 F -0.190 7.190 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.343 0.657 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.278 0.722 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.172 0.828 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -12.707 -23.207 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.077 0.923 4 C -0.030 4.030 5 H 0.100 0.900 6 N -0.305 5.305 7 C -0.063 4.063 8 C 0.224 3.776 9 O -0.513 6.513 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.195 1.195 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.162 4.162 20 C -0.027 4.027 21 N -0.337 5.337 22 C 0.313 3.687 23 O -0.450 6.450 24 C -0.217 4.217 25 C 0.411 3.589 26 F -0.173 7.173 27 F -0.159 7.159 28 F -0.171 7.171 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.190 0.810 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.359 -11.611 -23.560 26.301 hybrid contribution -0.953 0.671 0.945 1.500 sum -2.312 -10.940 -22.615 25.229 Atomic orbital electron populations 1.22091 0.94190 1.02959 1.02298 1.21546 0.94531 0.96131 0.84649 0.92330 1.22710 0.97467 0.93429 0.89369 0.90029 1.60178 1.59600 1.08347 1.02420 1.21572 1.01856 0.95619 0.87301 1.20950 0.83122 0.89752 0.83814 1.90507 1.55696 1.23532 1.81527 1.41913 1.60042 1.13561 1.05454 1.19599 1.44333 0.94715 0.87722 0.90511 1.25998 0.96942 0.98776 0.99466 1.69653 1.48607 1.18197 1.19453 0.85026 0.78765 0.77801 0.76981 1.19456 1.19793 1.19873 1.22945 0.97109 1.01035 0.95083 1.22827 0.96394 0.87768 0.95693 1.48408 1.52207 1.29334 1.03794 1.20030 0.80503 0.84976 0.83178 1.90817 1.41499 1.29085 1.83578 1.23026 1.08692 1.03615 0.86403 1.20174 0.74627 0.76276 0.87859 1.93197 1.87368 1.39913 1.96854 1.93212 1.86036 1.74919 1.61734 1.93195 1.30853 1.96325 1.96742 0.91509 0.93086 0.90799 0.83799 0.87034 0.91181 0.76836 0.91287 0.91045 0.87583 0.87840 0.87021 0.81021 0.80522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.09 71.98 0.65 -2.55 16 2 C 0.14 2.82 2.98 45.34 0.13 2.95 16 3 H 0.06 1.60 7.93 -2.39 -0.02 1.58 16 4 C 0.08 1.51 2.78 46.10 0.13 1.64 16 5 H 0.08 1.28 7.56 -2.39 -0.02 1.27 16 6 N -0.67 -19.01 5.94 -489.46 -2.91 -21.92 16 7 C 0.07 2.09 6.04 85.56 0.52 2.61 16 8 C 0.44 19.86 7.82 87.66 0.69 20.54 16 9 O -0.63 -34.07 15.78 -3.05 -0.05 -34.12 16 10 N -0.57 -28.36 5.29 -306.98 -1.62 -29.99 16 11 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 12 H 0.08 4.60 7.16 -2.92 -0.02 4.58 16 13 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 14 N -0.92 -48.39 13.05 21.66 0.28 -48.11 16 15 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 C -0.12 -1.66 6.78 32.06 0.22 -1.44 16 20 C 0.09 0.72 6.69 86.93 0.58 1.30 16 21 N -0.60 -9.64 3.07 -787.62 -2.41 -12.06 16 22 C 0.52 9.79 7.41 87.66 0.65 10.44 16 23 O -0.57 -16.53 13.89 -3.03 -0.04 -16.57 16 24 C -0.18 -1.57 4.76 29.85 0.14 -1.43 16 25 C 0.47 7.62 2.89 71.98 0.21 7.83 16 26 F -0.19 -4.32 16.40 44.97 0.74 -3.58 16 27 F -0.18 -2.52 17.32 44.97 0.78 -1.74 16 28 F -0.19 -4.05 16.40 44.97 0.74 -3.32 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.27 6.91 -2.39 -0.02 1.26 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.34 10.84 8.08 -89.69 -0.72 10.11 16 33 H 0.11 2.89 8.14 -2.39 -0.02 2.88 16 34 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 35 H 0.40 18.47 7.90 -92.71 -0.73 17.73 16 36 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.11 0.21 7.48 -2.39 -0.02 0.20 16 41 H 0.17 0.38 7.84 -2.39 -0.02 0.36 16 42 H 0.18 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -77.39 364.66 2.35 -75.04 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.37 Total: 28.06 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 5.20 Total: 23.89 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -6.66 Total: -112.08 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.09 Total: -50.69 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 2.25 Total: -8.64 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -77.39 2.35 -75.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571452040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.287 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds