Wall clock time and date at job start Tue Mar 31 2020 20:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.32550 * 2 1 4 4 C 1.54907 * 110.36939 * 237.64503 * 2 1 3 5 5 C 1.55158 * 101.58077 * 204.15579 * 4 2 1 6 6 H 1.09004 * 110.71597 * 277.13250 * 5 4 2 7 7 N 1.46500 * 110.71964 * 154.04676 * 5 4 2 8 8 C 1.36937 * 119.99976 * 154.99929 * 7 5 4 9 9 H 1.08001 * 120.00136 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99628 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00330 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99786 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47280 * 89.99904 * 12 10 8 14 14 H 1.48496 * 109.47303 * 209.99733 * 12 10 8 15 15 H 1.48502 * 109.47164 * 330.00292 * 12 10 8 16 16 C 1.54326 * 103.02347 * 35.30665 * 5 4 2 17 17 N 1.47023 * 107.26621 * 338.14173 * 16 5 4 18 18 C 1.34773 * 125.65051 * 178.85307 * 17 16 5 19 19 O 1.21283 * 120.00360 * 179.41739 * 18 17 16 20 20 C 1.50706 * 120.00081 * 359.69015 * 18 17 16 21 21 C 1.50696 * 109.47259 * 179.72770 * 20 18 17 22 22 O 1.21281 * 119.99992 * 359.97438 * 21 20 18 23 23 N 1.34778 * 119.99830 * 179.97438 * 21 20 18 24 24 C 1.46506 * 119.99945 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.46955 * 180.02562 * 24 23 21 26 26 F 1.39898 * 109.47086 * 60.00091 * 25 24 23 27 27 F 1.39896 * 109.46875 * 179.97438 * 25 24 23 28 28 F 1.39902 * 109.47248 * 300.00174 * 25 24 23 29 29 H 1.08996 * 109.47350 * 299.21728 * 1 2 3 30 30 H 1.09003 * 109.47129 * 59.21866 * 1 2 3 31 31 H 1.09001 * 109.47161 * 179.21894 * 1 2 3 32 32 H 1.09001 * 111.00367 * 322.22386 * 4 2 1 33 33 H 1.08993 * 111.00514 * 86.03875 * 4 2 1 34 34 H 0.96998 * 119.99665 * 334.99382 * 7 5 4 35 35 H 0.97003 * 119.99954 * 179.97438 * 11 10 8 36 36 H 1.09005 * 109.99243 * 218.66880 * 16 5 4 37 37 H 1.08993 * 109.78212 * 97.49966 * 16 5 4 38 38 H 1.09001 * 109.46564 * 299.73030 * 20 18 17 39 39 H 1.08998 * 109.47012 * 59.72084 * 20 18 17 40 40 H 0.96998 * 120.00160 * 0.02562 * 23 21 20 41 41 H 1.09000 * 109.46973 * 300.00268 * 24 23 21 42 42 H 1.09002 * 109.46843 * 60.00387 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7772 -1.2268 5 6 3.4778 -1.2005 -0.7327 6 1 4.1945 -0.3911 -0.8717 7 7 3.9268 -2.4120 -1.4234 8 6 5.2653 -2.6739 -1.5461 9 1 5.9899 -1.9871 -1.1341 10 6 5.6907 -3.8220 -2.2001 11 7 4.8076 -4.6592 -2.7018 12 14 7.5165 -4.1790 -2.3682 13 1 7.9752 -4.9734 -1.2004 14 1 7.7579 -4.9479 -3.6154 15 1 8.2682 -2.8993 -2.4222 16 6 3.2524 -1.4717 0.7697 17 7 2.0430 -0.7373 1.1691 18 6 1.4971 -0.7338 2.4013 19 8 0.4994 -0.0801 2.6208 20 6 2.1300 -1.5374 3.5081 21 6 1.3358 -1.3583 4.7762 22 8 0.3529 -0.6478 4.7810 23 7 1.7177 -1.9879 5.9051 24 6 0.9460 -1.8134 7.1381 25 6 1.5884 -2.6293 8.2616 26 9 2.9004 -2.1888 8.4663 27 9 0.8518 -2.4622 9.4391 28 9 1.6009 -3.9825 7.9068 29 1 -0.3634 0.5016 0.8969 30 1 -0.3633 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0140 32 1 1.4511 -1.6496 -1.4390 33 1 2.1393 -0.1288 -2.1000 34 1 3.2760 -3.0285 -1.7937 35 1 5.1049 -5.4613 -3.1591 36 1 4.1080 -1.1175 1.3448 37 1 3.1089 -2.5395 0.9344 38 1 2.1401 -2.5916 3.2315 39 1 3.1520 -1.1939 3.6678 40 1 2.5040 -2.5558 5.9014 41 1 0.9366 -0.7591 7.4147 42 1 -0.0763 -2.1562 6.9784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571488154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:55 Heat of formation + Delta-G solvation = -204.605547 kcal Electronic energy + Delta-G solvation = -29286.158653 eV Core-core repulsion = 24465.831243 eV Total energy + Delta-G solvation = -4820.327410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.63214 -48.14578 -48.10589 -40.52295 -39.35460 -37.21305 -35.29359 -34.19601 -32.40977 -31.44055 -30.74382 -28.83501 -28.37278 -25.35955 -24.10413 -23.78109 -22.22505 -21.03446 -20.31846 -19.10075 -19.02346 -18.87446 -18.21397 -17.46332 -17.13106 -16.41739 -16.05234 -15.92428 -15.66269 -15.12131 -14.97776 -14.81565 -14.59841 -14.53096 -14.26188 -14.24727 -14.06803 -13.74327 -13.68413 -13.40834 -13.16648 -13.04915 -12.69186 -12.40335 -12.30454 -12.00267 -11.83837 -11.70717 -11.28353 -11.07984 -10.84647 -10.70506 -10.35893 -10.24363 -10.08160 -9.81079 -9.69787 -9.24987 -9.02380 -8.31816 -7.16796 -5.91493 -3.22862 1.99772 2.35431 2.41685 2.83444 3.18134 3.24004 3.34353 3.40530 3.42076 3.50053 3.74630 4.30023 4.45069 4.59736 4.65005 4.85237 5.02717 5.06210 5.11515 5.21585 5.24608 5.46720 5.54570 5.63536 5.70433 5.82988 5.86992 6.07258 6.10035 6.16811 6.40302 6.46202 6.48282 6.69175 6.81793 6.91169 7.56547 7.79292 7.86502 8.25720 8.42616 9.37861 9.91594 10.26281 11.30305 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.002590 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.934765 B =10807.330223 C =12836.323332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.713 5.713 8 C -0.251 4.251 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.070 3.930 17 N -0.612 5.612 18 C 0.529 3.471 19 O -0.508 6.508 20 C -0.161 4.161 21 C 0.524 3.476 22 O -0.484 6.484 23 N -0.738 5.738 24 C 0.081 3.919 25 C 0.448 3.552 26 F -0.178 7.178 27 F -0.174 7.174 28 F -0.177 7.177 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.407 0.593 41 H 0.114 0.886 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 5.469 18.465 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.085 0.915 7 N -0.352 5.352 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.056 4.056 17 N -0.347 5.347 18 C 0.315 3.685 19 O -0.382 6.382 20 C -0.203 4.203 21 C 0.309 3.691 22 O -0.354 6.354 23 N -0.396 5.396 24 C -0.045 4.045 25 C 0.394 3.606 26 F -0.159 7.159 27 F -0.156 7.156 28 F -0.159 7.159 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.243 0.757 41 H 0.132 0.868 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.299 6.322 18.628 20.982 hybrid contribution 1.563 -1.178 0.073 1.958 sum -5.736 5.144 18.701 20.226 Atomic orbital electron populations 1.22166 0.94339 1.02487 1.03134 1.21837 0.94769 0.95229 0.84538 0.91040 1.23180 0.97842 1.00326 0.96300 1.21151 0.93285 0.91103 0.88472 0.91451 1.42387 1.05265 1.22442 1.65146 1.19253 0.83311 1.04631 1.30943 0.90916 1.24779 0.97730 0.97364 1.00592 1.69659 1.32353 1.13468 1.42118 0.86188 0.84771 0.77922 0.77249 1.21588 1.21708 1.20638 1.23337 0.85135 0.96584 1.00538 1.48607 1.28687 1.48803 1.08638 1.19403 0.84498 0.82571 0.82061 1.90766 1.24357 1.42180 1.80941 1.21558 1.01772 1.04453 0.92536 1.20120 0.85535 0.79666 0.83815 1.90884 1.25133 1.35443 1.83935 1.45735 1.32334 1.52823 1.08753 1.22394 0.97616 1.01874 0.82600 1.20566 0.77101 0.79089 0.83869 1.93234 1.38038 1.89147 1.95530 1.93227 1.76903 1.95294 1.50131 1.93242 1.96319 1.34684 1.91630 0.89770 0.92406 0.92847 0.90546 0.90184 0.77851 0.93283 0.92255 0.90922 0.85676 0.85840 0.75696 0.86797 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.71 37.16 0.32 -1.99 16 2 C 0.14 1.99 3.76 -66.42 -0.25 1.74 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -2.07 6.13 -24.58 -0.15 -2.22 16 5 C 0.17 3.00 3.60 -66.09 -0.24 2.76 16 6 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 7 N -0.71 -16.03 5.16 -51.65 -0.27 -16.30 16 8 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 12 Si 0.91 20.96 29.55 -169.99 -5.02 15.93 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.07 1.06 6.25 -3.06 -0.02 1.04 16 17 N -0.61 -8.94 3.24 -163.04 -0.53 -9.47 16 18 C 0.53 7.88 7.62 -10.98 -0.08 7.79 16 19 O -0.51 -9.29 11.84 -18.96 -0.22 -9.52 16 20 C -0.16 -1.69 5.38 -29.03 -0.16 -1.85 16 21 C 0.52 6.00 7.82 -10.99 -0.09 5.92 16 22 O -0.48 -7.76 14.18 -18.96 -0.27 -8.03 16 23 N -0.74 -5.79 5.42 -60.29 -0.33 -6.12 16 24 C 0.08 0.56 5.64 -4.04 -0.02 0.53 16 25 C 0.45 3.05 3.11 37.16 0.12 3.17 16 26 F -0.18 -1.34 17.18 2.25 0.04 -1.30 16 27 F -0.17 -1.30 17.32 2.25 0.04 -1.26 16 28 F -0.18 -1.37 17.18 2.25 0.04 -1.33 16 29 H 0.08 1.35 5.89 -51.93 -0.31 1.04 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.39 9.42 7.76 -40.82 -0.32 9.10 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 38 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 2.31 8.36 -40.82 -0.34 1.97 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -32.59 364.41 -6.68 -39.28 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.56 Total: 8.16 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.81 Total: 10.11 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.40 Total: -57.53 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.49 Total: -17.55 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.12 Total: -3.90 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.59 -6.68 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.328 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds