Wall clock time and date at job start Tue Mar 31 2020 20:10:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09004 * 110.32550 * 2 1
4 4 C 1.54907 * 110.36939 * 237.64503 * 2 1 3
5 5 C 1.55158 * 101.58077 * 204.15579 * 4 2 1
6 6 H 1.09004 * 110.71597 * 277.13250 * 5 4 2
7 7 N 1.46500 * 110.71964 * 154.04676 * 5 4 2
8 8 C 1.36937 * 119.99976 * 154.99929 * 7 5 4
9 9 H 1.08001 * 120.00136 * 359.97438 * 8 7 5
10 10 C 1.38812 * 119.99628 * 179.97438 * 8 7 5
11 11 N 1.31618 * 120.00330 * 359.97438 * 10 8 7
12 12 Si 1.86803 * 119.99786 * 179.97438 * 10 8 7
13 13 H 1.48502 * 109.47280 * 89.99904 * 12 10 8
14 14 H 1.48496 * 109.47303 * 209.99733 * 12 10 8
15 15 H 1.48502 * 109.47164 * 330.00292 * 12 10 8
16 16 C 1.54326 * 103.02347 * 35.30665 * 5 4 2
17 17 N 1.47023 * 107.26621 * 338.14173 * 16 5 4
18 18 C 1.34773 * 125.65051 * 178.85307 * 17 16 5
19 19 O 1.21283 * 120.00360 * 179.41739 * 18 17 16
20 20 C 1.50706 * 120.00081 * 359.69015 * 18 17 16
21 21 C 1.50696 * 109.47259 * 179.72770 * 20 18 17
22 22 O 1.21281 * 119.99992 * 359.97438 * 21 20 18
23 23 N 1.34778 * 119.99830 * 179.97438 * 21 20 18
24 24 C 1.46506 * 119.99945 * 179.97438 * 23 21 20
25 25 C 1.52996 * 109.46955 * 180.02562 * 24 23 21
26 26 F 1.39898 * 109.47086 * 60.00091 * 25 24 23
27 27 F 1.39896 * 109.46875 * 179.97438 * 25 24 23
28 28 F 1.39902 * 109.47248 * 300.00174 * 25 24 23
29 29 H 1.08996 * 109.47350 * 299.21728 * 1 2 3
30 30 H 1.09003 * 109.47129 * 59.21866 * 1 2 3
31 31 H 1.09001 * 109.47161 * 179.21894 * 1 2 3
32 32 H 1.09001 * 111.00367 * 322.22386 * 4 2 1
33 33 H 1.08993 * 111.00514 * 86.03875 * 4 2 1
34 34 H 0.96998 * 119.99665 * 334.99382 * 7 5 4
35 35 H 0.97003 * 119.99954 * 179.97438 * 11 10 8
36 36 H 1.09005 * 109.99243 * 218.66880 * 16 5 4
37 37 H 1.08993 * 109.78212 * 97.49966 * 16 5 4
38 38 H 1.09001 * 109.46564 * 299.73030 * 20 18 17
39 39 H 1.08998 * 109.47012 * 59.72084 * 20 18 17
40 40 H 0.96998 * 120.00160 * 0.02562 * 23 21 20
41 41 H 1.09000 * 109.46973 * 300.00268 * 24 23 21
42 42 H 1.09002 * 109.46843 * 60.00387 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9086 1.0222 0.0000
4 6 2.0692 -0.7772 -1.2268
5 6 3.4778 -1.2005 -0.7327
6 1 4.1945 -0.3911 -0.8717
7 7 3.9268 -2.4120 -1.4234
8 6 5.2653 -2.6739 -1.5461
9 1 5.9899 -1.9871 -1.1341
10 6 5.6907 -3.8220 -2.2001
11 7 4.8076 -4.6592 -2.7018
12 14 7.5165 -4.1790 -2.3682
13 1 7.9752 -4.9734 -1.2004
14 1 7.7579 -4.9479 -3.6154
15 1 8.2682 -2.8993 -2.4222
16 6 3.2524 -1.4717 0.7697
17 7 2.0430 -0.7373 1.1691
18 6 1.4971 -0.7338 2.4013
19 8 0.4994 -0.0801 2.6208
20 6 2.1300 -1.5374 3.5081
21 6 1.3358 -1.3583 4.7762
22 8 0.3529 -0.6478 4.7810
23 7 1.7177 -1.9879 5.9051
24 6 0.9460 -1.8134 7.1381
25 6 1.5884 -2.6293 8.2616
26 9 2.9004 -2.1888 8.4663
27 9 0.8518 -2.4622 9.4391
28 9 1.6009 -3.9825 7.9068
29 1 -0.3634 0.5016 0.8969
30 1 -0.3633 0.5259 -0.8829
31 1 -0.3633 -1.0276 -0.0140
32 1 1.4511 -1.6496 -1.4390
33 1 2.1393 -0.1288 -2.1000
34 1 3.2760 -3.0285 -1.7937
35 1 5.1049 -5.4613 -3.1591
36 1 4.1080 -1.1175 1.3448
37 1 3.1089 -2.5395 0.9344
38 1 2.1401 -2.5916 3.2315
39 1 3.1520 -1.1939 3.6678
40 1 2.5040 -2.5558 5.9014
41 1 0.9366 -0.7591 7.4147
42 1 -0.0763 -2.1562 6.9784
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001571488154.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:10:54
Heat of formation + Delta-G solvation = -226.365005 kcal
Electronic energy + Delta-G solvation = -29287.102214 eV
Core-core repulsion = 24465.831243 eV
Total energy + Delta-G solvation = -4821.270971 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 337.140 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-51.21992 -48.73517 -48.69735 -41.57349 -40.41099 -38.47291 -36.14755 -35.84199
-33.52621 -33.13262 -31.65828 -30.04854 -29.50459 -26.58092 -25.77855 -24.57335
-23.32890 -21.99139 -21.65222 -20.04511 -19.68236 -19.50543 -19.16947 -19.03276
-18.21977 -17.52794 -16.93531 -16.91863 -16.70879 -16.36265 -15.90247 -15.61573
-15.48912 -15.36238 -15.26493 -15.12332 -14.88693 -14.84237 -14.79990 -14.40808
-14.33920 -14.18150 -14.10625 -13.45391 -13.24151 -13.08983 -12.99844 -12.90167
-12.83376 -12.75687 -12.32182 -12.12216 -12.06299 -11.67009 -11.49310 -11.21729
-10.93993 -10.44404 -10.33797 -9.52810 -9.02086 -7.90604 -5.20259 1.33034
1.49203 1.53937 1.54887 1.62674 1.70925 1.72318 2.20765 2.60746
2.62022 2.93489 3.14374 3.35192 3.41672 3.62603 3.88074 3.94016
3.98893 4.09462 4.23946 4.28903 4.29346 4.37592 4.41041 4.56264
4.57203 4.78512 4.85362 4.93751 5.00977 5.16957 5.22181 5.28912
5.38302 5.58780 5.60157 6.21767 6.30203 6.62789 7.04478 7.30046
7.38133 8.10456 8.33619 9.32366
Molecular weight = 337.14amu
Principal moments of inertia in cm(-1)
A = 0.011238 B = 0.002590 C = 0.002181
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2490.934765 B =10807.330223 C =12836.323332
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.139 3.861
3 H 0.084 0.916
4 C -0.127 4.127
5 C 0.164 3.836
6 H 0.072 0.928
7 N -0.725 5.725
8 C -0.238 4.238
9 H 0.084 0.916
10 C -0.072 4.072
11 N -0.969 5.969
12 Si 0.968 3.032
13 H -0.287 1.287
14 H -0.303 1.303
15 H -0.268 1.268
16 C 0.084 3.916
17 N -0.611 5.611
18 C 0.521 3.479
19 O -0.544 6.544
20 C -0.155 4.155
21 C 0.526 3.474
22 O -0.536 6.536
23 N -0.723 5.723
24 C 0.080 3.920
25 C 0.458 3.542
26 F -0.180 7.180
27 F -0.177 7.177
28 F -0.181 7.181
29 H 0.065 0.935
30 H 0.077 0.923
31 H 0.041 0.959
32 H 0.064 0.936
33 H 0.092 0.908
34 H 0.375 0.625
35 H 0.250 0.750
36 H 0.081 0.919
37 H 0.064 0.936
38 H 0.147 0.853
39 H 0.156 0.844
40 H 0.420 0.580
41 H 0.120 0.880
42 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.956 6.087 19.576 21.092
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.036 3.964
3 H 0.102 0.898
4 C -0.166 4.166
5 C 0.054 3.946
6 H 0.090 0.910
7 N -0.364 5.364
8 C -0.370 4.370
9 H 0.102 0.898
10 C -0.264 4.264
11 N -0.619 5.619
12 Si 0.798 3.202
13 H -0.214 1.214
14 H -0.230 1.230
15 H -0.193 1.193
16 C -0.041 4.041
17 N -0.347 5.347
18 C 0.309 3.691
19 O -0.421 6.421
20 C -0.197 4.197
21 C 0.312 3.688
22 O -0.410 6.410
23 N -0.380 5.380
24 C -0.045 4.045
25 C 0.404 3.596
26 F -0.162 7.162
27 F -0.158 7.158
28 F -0.163 7.163
29 H 0.084 0.916
30 H 0.096 0.904
31 H 0.060 0.940
32 H 0.083 0.917
33 H 0.110 0.890
34 H 0.207 0.793
35 H 0.058 0.942
36 H 0.099 0.901
37 H 0.082 0.918
38 H 0.165 0.835
39 H 0.174 0.826
40 H 0.258 0.742
41 H 0.138 0.862
42 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -6.023 6.962 19.797 21.832
hybrid contribution 1.126 -1.297 -0.219 1.731
sum -4.897 5.665 19.578 20.961
Atomic orbital electron populations
1.22056 0.94270 1.01721 1.03166 1.21884 0.94800 0.95662 0.84101
0.89849 1.23073 0.96183 1.00165 0.97161 1.21357 0.94451 0.89269
0.89543 0.90973 1.42526 1.04209 1.23710 1.65905 1.19657 0.84720
1.03901 1.28686 0.89828 1.25502 1.01232 0.97956 1.01720 1.69810
1.33944 1.14037 1.44125 0.85223 0.80746 0.77852 0.76408 1.21394
1.23041 1.19318 1.23002 0.86031 0.96244 0.98865 1.48649 1.28494
1.48628 1.08893 1.20094 0.84048 0.82320 0.82617 1.90766 1.26012
1.43834 1.81519 1.21610 1.02647 1.04946 0.90532 1.20244 0.84811
0.79039 0.84674 1.90874 1.27387 1.37970 1.84783 1.45541 1.32432
1.51835 1.08212 1.22462 0.97652 1.02334 0.82061 1.20425 0.76831
0.78735 0.83630 1.93233 1.38241 1.89149 1.95544 1.93225 1.76988
1.95289 1.50296 1.93238 1.96325 1.35068 1.91648 0.91600 0.90400
0.94021 0.91690 0.88968 0.79293 0.94154 0.90123 0.91783 0.83514
0.82644 0.74156 0.86188 0.86411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.25 8.71 71.98 0.63 -3.62 16
2 C 0.14 3.74 3.76 45.46 0.17 3.91 16
3 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16
4 C -0.13 -3.64 6.13 31.99 0.20 -3.45 16
5 C 0.16 5.41 3.60 46.18 0.17 5.57 16
6 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16
7 N -0.72 -31.95 5.16 -317.32 -1.64 -33.59 16
8 C -0.24 -11.71 9.96 84.03 0.84 -10.88 16
9 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16
10 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16
11 N -0.97 -55.61 13.06 21.65 0.28 -55.33 16
12 Si 0.97 42.72 29.55 68.60 2.03 44.75 16
13 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16
14 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16
15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16
16 C 0.08 2.35 6.25 86.73 0.54 2.89 16
17 N -0.61 -16.76 3.24 -788.14 -2.55 -19.32 16
18 C 0.52 14.80 7.62 87.66 0.67 15.46 16
19 O -0.54 -19.81 11.84 20.40 0.24 -19.56 16
20 C -0.16 -2.89 5.38 29.10 0.16 -2.74 16
21 C 0.53 11.26 7.82 87.66 0.69 11.94 16
22 O -0.54 -17.05 14.18 20.41 0.29 -16.76 16
23 N -0.72 -9.86 5.42 -463.05 -2.51 -12.37 16
24 C 0.08 0.98 5.64 86.38 0.49 1.47 16
25 C 0.46 5.49 3.11 71.98 0.22 5.71 16
26 F -0.18 -2.37 17.18 44.97 0.77 -1.60 16
27 F -0.18 -2.39 17.32 44.97 0.78 -1.61 16
28 F -0.18 -2.50 17.18 44.97 0.77 -1.72 16
29 H 0.07 2.10 5.89 -2.39 -0.01 2.09 16
30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16
32 H 0.06 2.03 7.93 -2.39 -0.02 2.02 16
33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
34 H 0.37 18.28 7.76 -92.71 -0.72 17.56 16
35 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16
36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16
37 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16
38 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16
39 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16
40 H 0.42 3.61 8.36 -92.71 -0.78 2.84 16
41 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16
42 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16
Total: -1.00 -70.73 364.41 3.28 -67.45
By element:
Atomic # 1 Polarization: 27.11 SS G_CDS: -0.41 Total: 26.69 kcal
Atomic # 6 Polarization: 17.74 SS G_CDS: 5.23 Total: 22.97 kcal
Atomic # 7 Polarization: -114.18 SS G_CDS: -6.42 Total: -120.60 kcal
Atomic # 8 Polarization: -36.86 SS G_CDS: 0.53 Total: -36.32 kcal
Atomic # 9 Polarization: -7.26 SS G_CDS: 2.32 Total: -4.94 kcal
Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal
Total: -70.73 3.28 -67.45 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571488154.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -158.917 kcal
(2) G-P(sol) polarization free energy of solvation -70.726 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.643 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.448 kcal
(6) G-S(sol) free energy of system = (1) + (5) -226.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds