Wall clock time and date at job start Tue Mar 31 2020 20:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.32550 * 2 1 4 4 C 1.54907 * 110.36939 * 237.64503 * 2 1 3 5 5 C 1.55158 * 101.58077 * 204.15579 * 4 2 1 6 6 H 1.09004 * 110.71597 * 277.13250 * 5 4 2 7 7 N 1.46500 * 110.71964 * 154.04676 * 5 4 2 8 8 C 1.36937 * 119.99976 * 154.99929 * 7 5 4 9 9 H 1.08001 * 120.00136 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99628 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00330 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99786 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47280 * 89.99904 * 12 10 8 14 14 H 1.48496 * 109.47303 * 209.99733 * 12 10 8 15 15 H 1.48502 * 109.47164 * 330.00292 * 12 10 8 16 16 C 1.54326 * 103.02347 * 35.30665 * 5 4 2 17 17 N 1.47023 * 107.26621 * 338.14173 * 16 5 4 18 18 C 1.34773 * 125.65051 * 178.85307 * 17 16 5 19 19 O 1.21283 * 120.00360 * 179.41739 * 18 17 16 20 20 C 1.50706 * 120.00081 * 359.69015 * 18 17 16 21 21 C 1.50696 * 109.47259 * 179.72770 * 20 18 17 22 22 O 1.21281 * 119.99992 * 359.97438 * 21 20 18 23 23 N 1.34778 * 119.99830 * 179.97438 * 21 20 18 24 24 C 1.46506 * 119.99945 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.46955 * 180.02562 * 24 23 21 26 26 F 1.39898 * 109.47086 * 60.00091 * 25 24 23 27 27 F 1.39896 * 109.46875 * 179.97438 * 25 24 23 28 28 F 1.39902 * 109.47248 * 300.00174 * 25 24 23 29 29 H 1.08996 * 109.47350 * 299.21728 * 1 2 3 30 30 H 1.09003 * 109.47129 * 59.21866 * 1 2 3 31 31 H 1.09001 * 109.47161 * 179.21894 * 1 2 3 32 32 H 1.09001 * 111.00367 * 322.22386 * 4 2 1 33 33 H 1.08993 * 111.00514 * 86.03875 * 4 2 1 34 34 H 0.96998 * 119.99665 * 334.99382 * 7 5 4 35 35 H 0.97003 * 119.99954 * 179.97438 * 11 10 8 36 36 H 1.09005 * 109.99243 * 218.66880 * 16 5 4 37 37 H 1.08993 * 109.78212 * 97.49966 * 16 5 4 38 38 H 1.09001 * 109.46564 * 299.73030 * 20 18 17 39 39 H 1.08998 * 109.47012 * 59.72084 * 20 18 17 40 40 H 0.96998 * 120.00160 * 0.02562 * 23 21 20 41 41 H 1.09000 * 109.46973 * 300.00268 * 24 23 21 42 42 H 1.09002 * 109.46843 * 60.00387 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7772 -1.2268 5 6 3.4778 -1.2005 -0.7327 6 1 4.1945 -0.3911 -0.8717 7 7 3.9268 -2.4120 -1.4234 8 6 5.2653 -2.6739 -1.5461 9 1 5.9899 -1.9871 -1.1341 10 6 5.6907 -3.8220 -2.2001 11 7 4.8076 -4.6592 -2.7018 12 14 7.5165 -4.1790 -2.3682 13 1 7.9752 -4.9734 -1.2004 14 1 7.7579 -4.9479 -3.6154 15 1 8.2682 -2.8993 -2.4222 16 6 3.2524 -1.4717 0.7697 17 7 2.0430 -0.7373 1.1691 18 6 1.4971 -0.7338 2.4013 19 8 0.4994 -0.0801 2.6208 20 6 2.1300 -1.5374 3.5081 21 6 1.3358 -1.3583 4.7762 22 8 0.3529 -0.6478 4.7810 23 7 1.7177 -1.9879 5.9051 24 6 0.9460 -1.8134 7.1381 25 6 1.5884 -2.6293 8.2616 26 9 2.9004 -2.1888 8.4663 27 9 0.8518 -2.4622 9.4391 28 9 1.6009 -3.9825 7.9068 29 1 -0.3634 0.5016 0.8969 30 1 -0.3633 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0140 32 1 1.4511 -1.6496 -1.4390 33 1 2.1393 -0.1288 -2.1000 34 1 3.2760 -3.0285 -1.7937 35 1 5.1049 -5.4613 -3.1591 36 1 4.1080 -1.1175 1.3448 37 1 3.1089 -2.5395 0.9344 38 1 2.1401 -2.5916 3.2315 39 1 3.1520 -1.1939 3.6678 40 1 2.5040 -2.5558 5.9014 41 1 0.9366 -0.7591 7.4147 42 1 -0.0763 -2.1562 6.9784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571488154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:54 Heat of formation + Delta-G solvation = -226.365005 kcal Electronic energy + Delta-G solvation = -29287.102214 eV Core-core repulsion = 24465.831243 eV Total energy + Delta-G solvation = -4821.270971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.21992 -48.73517 -48.69735 -41.57349 -40.41099 -38.47291 -36.14755 -35.84199 -33.52621 -33.13262 -31.65828 -30.04854 -29.50459 -26.58092 -25.77855 -24.57335 -23.32890 -21.99139 -21.65222 -20.04511 -19.68236 -19.50543 -19.16947 -19.03276 -18.21977 -17.52794 -16.93531 -16.91863 -16.70879 -16.36265 -15.90247 -15.61573 -15.48912 -15.36238 -15.26493 -15.12332 -14.88693 -14.84237 -14.79990 -14.40808 -14.33920 -14.18150 -14.10625 -13.45391 -13.24151 -13.08983 -12.99844 -12.90167 -12.83376 -12.75687 -12.32182 -12.12216 -12.06299 -11.67009 -11.49310 -11.21729 -10.93993 -10.44404 -10.33797 -9.52810 -9.02086 -7.90604 -5.20259 1.33034 1.49203 1.53937 1.54887 1.62674 1.70925 1.72318 2.20765 2.60746 2.62022 2.93489 3.14374 3.35192 3.41672 3.62603 3.88074 3.94016 3.98893 4.09462 4.23946 4.28903 4.29346 4.37592 4.41041 4.56264 4.57203 4.78512 4.85362 4.93751 5.00977 5.16957 5.22181 5.28912 5.38302 5.58780 5.60157 6.21767 6.30203 6.62789 7.04478 7.30046 7.38133 8.10456 8.33619 9.32366 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.002590 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.934765 B =10807.330223 C =12836.323332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.164 3.836 6 H 0.072 0.928 7 N -0.725 5.725 8 C -0.238 4.238 9 H 0.084 0.916 10 C -0.072 4.072 11 N -0.969 5.969 12 Si 0.968 3.032 13 H -0.287 1.287 14 H -0.303 1.303 15 H -0.268 1.268 16 C 0.084 3.916 17 N -0.611 5.611 18 C 0.521 3.479 19 O -0.544 6.544 20 C -0.155 4.155 21 C 0.526 3.474 22 O -0.536 6.536 23 N -0.723 5.723 24 C 0.080 3.920 25 C 0.458 3.542 26 F -0.180 7.180 27 F -0.177 7.177 28 F -0.181 7.181 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.420 0.580 41 H 0.120 0.880 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 6.087 19.576 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.102 0.898 4 C -0.166 4.166 5 C 0.054 3.946 6 H 0.090 0.910 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.102 0.898 10 C -0.264 4.264 11 N -0.619 5.619 12 Si 0.798 3.202 13 H -0.214 1.214 14 H -0.230 1.230 15 H -0.193 1.193 16 C -0.041 4.041 17 N -0.347 5.347 18 C 0.309 3.691 19 O -0.421 6.421 20 C -0.197 4.197 21 C 0.312 3.688 22 O -0.410 6.410 23 N -0.380 5.380 24 C -0.045 4.045 25 C 0.404 3.596 26 F -0.162 7.162 27 F -0.158 7.158 28 F -0.163 7.163 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.165 0.835 39 H 0.174 0.826 40 H 0.258 0.742 41 H 0.138 0.862 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.023 6.962 19.797 21.832 hybrid contribution 1.126 -1.297 -0.219 1.731 sum -4.897 5.665 19.578 20.961 Atomic orbital electron populations 1.22056 0.94270 1.01721 1.03166 1.21884 0.94800 0.95662 0.84101 0.89849 1.23073 0.96183 1.00165 0.97161 1.21357 0.94451 0.89269 0.89543 0.90973 1.42526 1.04209 1.23710 1.65905 1.19657 0.84720 1.03901 1.28686 0.89828 1.25502 1.01232 0.97956 1.01720 1.69810 1.33944 1.14037 1.44125 0.85223 0.80746 0.77852 0.76408 1.21394 1.23041 1.19318 1.23002 0.86031 0.96244 0.98865 1.48649 1.28494 1.48628 1.08893 1.20094 0.84048 0.82320 0.82617 1.90766 1.26012 1.43834 1.81519 1.21610 1.02647 1.04946 0.90532 1.20244 0.84811 0.79039 0.84674 1.90874 1.27387 1.37970 1.84783 1.45541 1.32432 1.51835 1.08212 1.22462 0.97652 1.02334 0.82061 1.20425 0.76831 0.78735 0.83630 1.93233 1.38241 1.89149 1.95544 1.93225 1.76988 1.95289 1.50296 1.93238 1.96325 1.35068 1.91648 0.91600 0.90400 0.94021 0.91690 0.88968 0.79293 0.94154 0.90123 0.91783 0.83514 0.82644 0.74156 0.86188 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.71 71.98 0.63 -3.62 16 2 C 0.14 3.74 3.76 45.46 0.17 3.91 16 3 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 4 C -0.13 -3.64 6.13 31.99 0.20 -3.45 16 5 C 0.16 5.41 3.60 46.18 0.17 5.57 16 6 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16 7 N -0.72 -31.95 5.16 -317.32 -1.64 -33.59 16 8 C -0.24 -11.71 9.96 84.03 0.84 -10.88 16 9 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 10 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 11 N -0.97 -55.61 13.06 21.65 0.28 -55.33 16 12 Si 0.97 42.72 29.55 68.60 2.03 44.75 16 13 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 C 0.08 2.35 6.25 86.73 0.54 2.89 16 17 N -0.61 -16.76 3.24 -788.14 -2.55 -19.32 16 18 C 0.52 14.80 7.62 87.66 0.67 15.46 16 19 O -0.54 -19.81 11.84 20.40 0.24 -19.56 16 20 C -0.16 -2.89 5.38 29.10 0.16 -2.74 16 21 C 0.53 11.26 7.82 87.66 0.69 11.94 16 22 O -0.54 -17.05 14.18 20.41 0.29 -16.76 16 23 N -0.72 -9.86 5.42 -463.05 -2.51 -12.37 16 24 C 0.08 0.98 5.64 86.38 0.49 1.47 16 25 C 0.46 5.49 3.11 71.98 0.22 5.71 16 26 F -0.18 -2.37 17.18 44.97 0.77 -1.60 16 27 F -0.18 -2.39 17.32 44.97 0.78 -1.61 16 28 F -0.18 -2.50 17.18 44.97 0.77 -1.72 16 29 H 0.07 2.10 5.89 -2.39 -0.01 2.09 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 2.03 7.93 -2.39 -0.02 2.02 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.37 18.28 7.76 -92.71 -0.72 17.56 16 35 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 38 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.42 3.61 8.36 -92.71 -0.78 2.84 16 41 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.73 364.41 3.28 -67.45 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.41 Total: 26.69 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 5.23 Total: 22.97 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -6.42 Total: -120.60 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: 0.53 Total: -36.32 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 2.32 Total: -4.94 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -70.73 3.28 -67.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.917 kcal (2) G-P(sol) polarization free energy of solvation -70.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds